Array 1 1335-267 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJHGU010000016.1 Klebsiella pneumoniae strain 20KE 20ke_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1334 28 100.0 32 ............................ CACATCAACGCGCTGCCGCTGGACGAGAACCA G [1317] 1273 28 100.0 32 ............................ GGCGTTTAGCGTTCCGTCCGGTAACCCATAAA G [1256] 1212 28 96.4 32 ...........................T TAAGCTCAAGACACTCTGCGATGCTCGCCACC G [1195] 1151 28 100.0 32 ............................ TATGACAACTGAAGAGTTTATTAGAAGATCAA G [1134] 1090 28 100.0 33 ............................ CTGCATCGTGCAAGGAATGTTTGAGGGTTTACG G [1073] 1028 28 100.0 33 ............................ CTGGTGATGTAGTGGTTGCCTATCGCGGGAGCC 967 28 100.0 33 ............................ TGACCCCGGCTGATTGGGCTATATGCAAAAGGC 906 28 100.0 33 ............................ TGGCCGAGCTCTGCCTGACGATTACGATATCAG 845 28 100.0 34 ............................ CGAGGTTCGAAGGCTGGATAACCTGCCGCCGCTG 783 28 100.0 33 ............................ CCCAGATGCGGTTTTCGCCCGTTCGAATATGTT 722 28 100.0 34 ............................ CTCTGTTGAATCCCTGATATCTGCAAATGCCTGG 660 28 92.9 33 ..............T.....A....... TTGTCGAAGGGCATATTGACAGAAACCCTGCTG 599 28 96.4 33 ........T................... TCGGTGTTCGTCCGGGTAAACGTGCCGGTGAGC 538 28 100.0 33 ............................ TGATCAGCGAGCTGCTGATTGATATCGAAATCG 477 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 416 28 85.7 33 ............C.........G.GG.. CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 355 28 96.4 33 ..............T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 294 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================== ================== 18 28 97.8 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCCGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGTGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGATATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGAATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATGGCTTTGTTGAATAAATCGAACTTTTGCTGAGTTGAAGGATCAGATCACGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8547-11266 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJHGU010000053.1 Klebsiella pneumoniae strain 20KE 20ke_contig_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 8547 28 100.0 33 ............................ TGAATGAGTACGAATGTCTAACAGACGAGATAG 8608 28 100.0 33 ............................ TGGACGGCAAGTGGCATGAGACCAGCCTTGGCG 8669 28 100.0 33 ............................ TGACTTTAAGGCTAAGCGGTACAAATACCTGGT 8730 28 100.0 33 ............................ TACGTTGTCCTTTGACTACCAGCTAACTGACGG 8791 28 100.0 33 ............................ TCCCTTTTCACCTGGCCGGGCTAGCTGCTTTAT 8852 28 96.4 33 ......................G..... CATCGCCATCTTTGATGGCATCTGCAAGCAGCC 8913 28 100.0 33 ............................ CAGAGATGTTCACTAAGATTGCCACCGACCTTG 8974 28 100.0 33 ............................ TGACAGCCGTTAACGGAACGTGCCCCGCGCACG 9035 28 100.0 33 ............................ CACGCTCTGCTACAACCTGTGGGATAAAGTCGT 9096 28 100.0 33 ............................ TTAAATACGACGCGCTGTACGGTCAGATACGAG 9157 28 100.0 33 ............................ CATCAAGCGCTTTAGTTTTCGTCTCCTCAATGT 9218 28 100.0 33 ............................ TTGCTCAGACTGAAATCACCAATACCCTGCGCG 9279 28 100.0 33 ............................ CAGCGTCAATCCAGCGCAAGGCGGCAACTATCT 9340 28 100.0 33 ............................ TATGGATAAGCTGATTGCCACCCAGGCCGAGGT 9401 28 100.0 33 ............................ TCAGAGGTGTTATTTAGTAGGCCAGATTACAGG 9462 28 100.0 33 ............................ TGGCAATGCTTTTTATACCGGGGTATTTGAGAA 9523 28 100.0 33 ............................ TGGCAAGGTCATGAACGGACTCACTAAGCGCCG 9584 28 100.0 33 ............................ TTGGATACCGGACGCATGACTGTGACAGCAGGT 9645 28 100.0 33 ............................ CAGCGCCGGCCAGGTTATCGAGTTTGGTTACTA 9706 28 100.0 33 ............................ TTAAGGTTCCTGACTTATGCCGGTTATTCACAT 9767 28 100.0 33 ............................ TGGCTCTGTCGCCGATGCTGTAAATTATATTAC 9828 28 100.0 33 ............................ TATATAAATAAAAAAGTTGCAAACGCTCAGGGC 9889 28 100.0 33 ............................ CTGGTATTCTTGGGTCGGTACGCTCCCTCATGT 9950 28 100.0 33 ............................ TCTGCTCGTCAGTGATACTGGCACGGCGTTGCG 10011 28 100.0 33 ............................ CAAGACTCATGTGTGGTTCGGAAGTTGTACAAC 10072 28 100.0 33 ............................ CAGAAAAGCTGCTTGGCTATTCAAGGTTTGATC 10133 28 100.0 33 ............................ TCATCGAAGCAATGTATGATTGCGCTATGGGCG 10194 28 100.0 34 ............................ CCACTCAGTGGCACCGTCGAATCCTGACAAGCCA 10256 28 100.0 33 ............................ TTAGCTAAACACAGGGGATTCTAAACATGGCTA 10317 28 100.0 33 ............................ CACCGATAACGATAGCCGCCAGTTGAATCTTGA 10378 28 100.0 33 ............................ CTTGAGTATCTTGAGGCAAGTAAAAAAGCAGGA 10439 28 100.0 33 ............................ TGAGAGATATGCTTGAGCTTGTTGACCAGTACC 10500 28 100.0 33 ............................ CCTTGAGCGGAGACTTGCCGATGATGCCATGCT 10561 28 100.0 33 ............................ TTGACATCTTCAACGGTGATGTAAGTGATCATG 10622 28 100.0 33 ............................ TACCATACGGGAAATCTGTGTGGATATTATGAA 10683 28 100.0 33 ............................ CATGGGAGTTAAAGGCCCCGTCAGGGTCTCATG 10744 28 100.0 33 ............................ TGGCTTCCGTCCAGCTATCGGTTGTGATATTAA 10805 28 100.0 33 ............................ TCATGATGCAGGCAGAGTATGGAAAGAGAAGGC 10866 28 100.0 33 ............................ TGACATTATTATTATTGCTCGTAACCTGATGGA 10927 28 100.0 33 ............................ TGATAACGGCATCATCACAGGTCGCCAGTCGCT 10988 28 100.0 33 ............................ TCGCAAAAGGCGTGTATATCAATATCGGCAAGA 11049 28 100.0 33 ............................ TATTTCGGAGTGGCCCAACGACGCCGCCGTGTG 11110 28 100.0 33 ............................ TCGCAAAAGGCGTGTATATCAATATCGGCAAGA 11171 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCGGGCATTCGTTCT 11240 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ========================================= ================== 45 28 99.6 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //