Array 1 61020-60564 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTDR01000020.1 Halomonas hydrothermalis strain MTCC 5445 contig00020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 61019 29 100.0 32 ............................. GCATGAAGAAAGCCGATGAGCAAGCCGAAAAA 60958 29 100.0 32 ............................. GAGGAAGGCGGCGACGGCCAGCTAGTGCAACG 60897 29 100.0 33 ............................. ACGGCAGCATCATCCCGGTCGAGATCGTCATGC 60835 29 100.0 32 ............................. ACGACTTAACGGCTCGGCACTAAACACAGTGA 60774 29 100.0 32 ............................. GCAAATTTTGGAGTGAGGCAAAATGATTCCGA 60713 29 100.0 32 ............................. ATCTGCTCCGGGAACAAACGCGGCGTCACCCG 60652 29 100.0 32 ............................. TGCATGAGCTATACGGTTCAACTATAACGGGG 60591 28 93.1 0 ......................A-..... | ========== ====== ====== ====== ============================= ================================= ================== 8 29 99.1 32 CCGATCCCCGCACGAGCGGGGATGAACCG # Left flank : TACTGGTGAATCAGGGTGTTGACCATCCGGG # Right flank : GGCACCAGCATGGAGGGTGTGGGCATCTATGACCGATCTCCGCTTAGGATATAGTTCATGTGTGCGAGGTTTTGCAGTGAGAATCAGCTTTTCTACCTGTCGTTATTACATGGAGCCTAGCCGATATTTTGCTTACACTTCTTCAGGTAATGCGAGAGACCAATATTCGCCTGGTGTGTCCTGTGAAAACAGATGAGGCATTTGGGGATGGCGAGCCAACCTCGCATTACGCCTCCTTCTTGGGAAGGTGCAGCTTTCCATCGAAGTGCATGGCTGGCTGACCGATGTAAGCTGACACCTTTTCTAAAGATCTAATGCACTAGCCTAGTGTGCTTAACCCCCGCCCCAACATGTCGCCCGAGCGGGGGCCGTGGTTACTCTTTTTCGTCCTCTTCTTCCTCTTCCCAGTGTTCCATGGCGCGTTTGTCGTCGGGTAGGCGCACGATGTCGCCGATGACGATTTTCTGGTGTGATTTGAAGCGGTGGCCGTGTTCGTCGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCACGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGATCCCCGCACGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 733-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTDR01000034.1 Halomonas hydrothermalis strain MTCC 5445 contig00034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 732 29 100.0 32 ............................. TGATATGTGGTTCAAAAACCTACTGATCTACC 671 29 100.0 32 ............................. GTTTAAAATCTGGACGAGCGGCAGGATAGACA 610 29 100.0 32 ............................. AACTCCTCGAGCTGGTGATCGGGCACGTCGGG 549 29 100.0 32 ............................. TGGCGGCCCAAGCTGATCGCCCAAAGGCTGGG 488 29 100.0 32 ............................. AATGAAATTAGCGATAATATTGCTGGTTTTCA 427 29 100.0 32 ............................. GCGCGCCACCGCGCCCGCCTGCATGGCCTGAA 366 29 100.0 32 ............................. TTGATGCTTGGCTCGCACAGCACCGCTGCAAA 305 29 100.0 32 ............................. CCATTCGTTCGCTGGCATGGGTCGGCCATAAA 244 29 100.0 32 ............................. GCTATTCAGAGCGTCACCACGCAGGACGATTG 183 29 100.0 32 ............................. GCTGCTTGGCGTAGATGGCCAGACGGATCTCA 122 29 100.0 32 ............................. TGTTCGCAGTCATGGTTGATGACGGGCCTGGA 61 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 CCGATCCCCGCACGAGCGGGGATGAACCG # Left flank : CACGTTTTCGCCCAGTTGCTGCTCTGTGCCG # Right flank : GCTACCGACCCTGACTGAAACCGGTGGTCGCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCACGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGATCCCCGCACGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [20.0-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 916-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTDR01000009.1 Halomonas hydrothermalis strain MTCC 5445 contig00009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 915 29 100.0 32 ............................. CCTGGTTCATGGCAGTAGAAACGGGCGTCTTC 854 29 100.0 32 ............................. GGAACTAGAAAAATATGATCAAAATAGAGATC 793 29 100.0 32 ............................. CGCGTACAGGACGACGACCAGCAGGCAGGGTA 732 29 100.0 32 ............................. CCTTCGAACCTTTACGCCCGGTGCTGGCAACA 671 29 100.0 32 ............................. CATTACCTCTTGCTCTTTTGCATGACCGTACA 610 29 100.0 32 ............................. GCTACTTGCTTTGATAGAGGGGGGCGTCTCAG 549 29 100.0 32 ............................. AGCAGCGCGGGCACCGAGGACAACACCCAGAA 488 29 96.6 32 ............................T GGTGTAGATTGATTGCTGAAGCGGTGTACCAA 427 29 100.0 32 ............................. TGCCAGAGCGCGACGCGTTCGTGCTGGCTCAA 366 28 96.6 32 .................-........... TGCAGGGAGAACGTTGGATATTGGGCTGTTAG 306 29 100.0 33 ............................. CTGGCCAACCGCGCGACCTGATACCCCCTCAGC 244 29 100.0 32 ............................. CAATGGCTGGGCAGGGCGGCAATCACCGCTGC 183 29 100.0 32 ............................. ATGGAAGCTCTTTCCGAGGTCTGTTCTTTCAG 122 29 100.0 32 ............................. CATGCCGACAGGTGGTATTACAGCCCCGACGA 61 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.5 32 CCGATCCCCGCACGAGCGGGGATGAACCG # Left flank : GGCGAGATTCAGCCCCCACCGCCAGCACCTGATGCTGTGCCACCTGCAATTCCAGAACCACCGTCGGTCGGTGATGCCGGGCACAGGAGCGGATAAATGGCGATGCTCGTAGTGGTTACAGAAGCCGTGCCGCCACGCCTACGTGGCAGGTTAGCAGTGTGGCTTTTAGAGATTAGAGCCGGTGTTTATGTGGGTGATGTAAGCAGGCGCATTCGCGAAATGATCTGGGAGCAGGTCGAAGCGCTAGCTGAAGATGGCAACGTCGCCATGGCCTGGGCAAGCAGCCATGAATCGGGGTTTGAATTCCAAACCTACGGTGAAAACCGCCGAGAGCCGATTGATCATGACGGATTGCGTTTGGTGCGTTTTTTACCGCCCCAAGTTAACTAACTGATTTTATTTGCTCTTTAACAATTTGAAGTGGTTAAAAAGTAAGCAAAATAGCTGGTGGAATTTTTATCTGCTATTTTCTTCATGTAGATCAAGTATCTACAACAAGT # Right flank : GTATTTGCAGCAGAGGGTTTGGATGCCCACGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCACGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGATCCCCGCACGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //