Array 1 297467-298360 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVF010000003.1 Listeria seeligeri strain FSL L7-0748 NODE_3_length_303863_cov_32.078654, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 297467 36 100.0 30 .................................... CCGTAAAATGCTAATGAAGTCGAATTGCCT 297533 36 100.0 30 .................................... ATTCCTTATTTGCTTTCAACTGCGCGTCAG 297599 36 100.0 30 .................................... TGGAATTTGATGGGAAACATCAAGTAATAC 297665 36 100.0 30 .................................... CGAAGTGATATAAATGCTTTCTCTCGCTGA 297731 36 100.0 30 .................................... GGAGTACTGTGTCAGAAGCATAGTCGTAAA 297797 36 100.0 30 .................................... CTGTAATAAAGAATTCTTCATTAGATAGTA 297863 36 100.0 30 .................................... AAATTAAAGCGAAGTTAGCGGAGAGGAACG 297929 36 100.0 30 .................................... TAAAGGATACATCCAGTTAGCACTACGCAC 297995 36 100.0 30 .................................... TTTCGGAGATTTGGTAGTCGTTAAATTTGT 298061 36 100.0 30 .................................... GAATTTTGCAGTAAGGTTTTCTATACTAAG 298127 36 100.0 30 .................................... GACGAGCCAGCACTAAAAGACATTGCTATA 298193 36 100.0 30 .................................... CTGAAAGAGCCAAGAGCCTCTGTCTGTTGT 298259 36 100.0 30 .................................... TTCTTGCTCTTCTAACAATCCAAGCGCTTC 298325 36 94.4 0 .....................A...A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCGAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATCAAAACTGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : CAGCGAGGATGAACTACAAAAGTAATATCCTTTACATCTATTTTTTTCTATATTTAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTTTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGTCTAAAACAAAACACCGAAGCAATTATCAATAACACGATCGCGGGAAAAGCTAAAAGTGCAGTAATGGCAAAACATGCGCACCCAATTATGCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCCAAAGCGGCCATTACATAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAACTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 202843-200991 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVF010000002.1 Listeria seeligeri strain FSL L7-0748 NODE_2_length_432604_cov_27.263288, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 202842 29 100.0 36 ............................. AAAAAACAAATCAGTAAGTGAAGCAAAAAAAATGCA 202777 29 100.0 36 ............................. AAAGTATCTGTTCCATACCCTTTGTATTCAAATTGC 202712 29 100.0 36 ............................. CAATTTGACGAAAGAAACAATGTGAAGTGGTATTCT 202647 29 100.0 37 ............................. TTTTTAATTTCTTTAATTGGATTACCTTGTTCATCGC 202581 29 100.0 34 ............................. GACAAAGAGTTAAGCTCAATCATTGATTATTTTA 202518 29 100.0 37 ............................. CAGATTGGTACATATAAAAGGGAGATAACGGGATGAT 202452 29 100.0 35 ............................. AAGAAAGAATGGATGGCATCAAAGAGGCGTTTAGT 202388 29 100.0 36 ............................. TTGTTAGAGCTTATAAGCGCGTCTATGGGGTTTACT 202323 28 96.6 35 .........-................... GTTGGTAAACGCCTTGAACACCCTTACGTTTCACG 202260 29 100.0 38 ............................. CAACAGCAAGATAAAAAGAAGCCTCGAAAAAAGTTTCA 202193 29 100.0 35 ............................. TTGTATGATTTTAATGCTGTATAAATTTCACTACC 202129 29 100.0 37 ............................. GTCCACGTGACCATCATATCTCGTGACCCAGCCATCC 202063 29 100.0 36 ............................. CTAGGTGATCCATTATTAGATAAATTTGTGAAGGAC 201998 29 100.0 36 ............................. ATCTGTCATTTTCATGTGTTTTAACAGGTTTCAACG 201933 29 96.6 36 T............................ AGGCCAATCAATTCATCAATGCTCTTAGGCTCTGCG 201868 29 96.6 40 T............................ TCAGTCGTTCGGTTGTAGTAACATAGCGCTCTACTTCTTG 201799 29 96.6 35 T............................ TAGTTTTGCCACATCATATTGTCCTTTCAATCCCG 201735 29 96.6 36 T............................ GCCGGAACAAAATTAGAAGTTGTGAACGGTGAACGG 201670 29 93.1 35 T...............A............ CAATATGTGGCGGATTGGATTGTCGATAGTAAACG 201606 29 96.6 36 T............................ GTTAAAATTAAACCAGTGAAAGATTTGCGCATTCCG 201541 29 96.6 37 T............................ GAGATAATGTTACTCATACCAGTCATTAGTCCGGAAG 201475 29 100.0 37 ............................. TGTCTAGCTGATTACCAGCCAGAATCAGGGTGTAAGG 201409 29 100.0 34 ............................. CTTTTCTACCAAGTTTTTATAGGCTTTTTGCCTT 201346 29 100.0 37 ............................. ATGACAAACGCATACGCTGCCGATTTAAACGTTTTCT 201280 29 100.0 36 ............................. TTAATACTTCTTTCCTCTTTCAAAATCCCCTCAAAA 201215 29 100.0 36 ............................. CCTGTCCCACCGACGACGAGCGCATGCGGATTAGCA 201150 29 100.0 36 ............................. GTCACTGTAAAAGGAATTTGTTCAGAATGAAGGGTA 201085 29 100.0 37 ............................. GTGGTCACAGCGTTCTTATTGCCAGCTGGTGAGCCCA 201019 29 72.4 0 .......C.G.....CA.....CA...CC | ========== ====== ====== ====== ============================= ======================================== ================== 29 29 98.0 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTGTGGCGCAATGTGTTTAAGATTTTTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAGGGTGAAATAACGCCAGCTCTTTTAGTGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGACTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGAATATGCTTGTTTAAGTCGAGAAAATAAGATAGATTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGATATTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCGAAAAACCCCACCCTCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGAGGGGGGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGGAAAAATAGAAAACGGAAAAATGGGAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTGTTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACTGTAGGATATACGGATGTGACATCTTATGAGACAGCGGTCCAACAATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:85.71%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 213873-212622 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVF010000002.1 Listeria seeligeri strain FSL L7-0748 NODE_2_length_432604_cov_27.263288, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 213872 29 100.0 35 ............................. TTATTTGATTCACCAGAGCCGTAGTAAGTGACGGC 213808 29 100.0 35 ............................. TCAATTTGCACAACTGTATAGACGATACTTCCATC 213744 29 100.0 35 ............................. TTTAACATCCATTGCCCTTGTTTCATATTGCCACC 213680 29 100.0 35 ............................. GAAGTTATCAAAGAAAACGATCATACGTGTGATGC 213616 29 100.0 34 ............................. TATTTTTAGTGAAACCGTTCGTTTTCAGCACATT 213553 29 100.0 35 ............................. CCCTTTGAATAAACAGGATATTCATTACCGCATTC 213489 29 100.0 34 ............................. AGGACTTAATGCTGTCCCTAAAAGTTCGAGTTCA 213426 29 100.0 35 ............................. GCGGAGTAAAAAAAGGCGTGAATGATGCAGTAAAT 213362 29 100.0 35 ............................. ATCTAAAGAAGAAATAGAAGAAATGGTAGCACAGC 213298 29 100.0 35 ............................. ATTTGTTCATCCTAGAATTAATTCGAGATTATAAA 213234 29 100.0 37 ............................. TAGTAGGAATTTCCGGTTCTTCAGTTTCCGGTAAAGA 213168 29 100.0 37 ............................. TTGCCAGTTGTCCCAAAAACGCGCCCCAATCTTCTCG 213102 29 100.0 33 ............................. GAAAAAGAATATGTATTCCACAATGCTAGTTTT 213040 29 100.0 36 ............................. GTAATTAAAATTGTCCTATTTTCTAAATCTATCAAG 212975 29 100.0 37 ............................. GATAGTTTTACCTCTTCACCGTTGACCTCGTACACAG 212909 29 96.6 34 .......A..................... GAAATCCGAAAAAGAACAATCCTCTTATCGTTTC 212846 29 96.6 37 C............................ GTTTTTGGTAATGGTTTTGGTGGAATTTTTTCATTGA 212780 29 100.0 36 ............................. CCAGAAAAGTTGCATATAATCTTTCCGCTTGGGTTC 212715 29 100.0 35 ............................. ATATACGGTATCCGGTATACTCGCCGTCCCATTCT 212651 29 86.2 0 ........C....C..A...........G | T [212624] ========== ====== ====== ====== ============================= ===================================== ================== 20 29 99.0 35 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTAACCGTTCCATCTTTTTTCTCTTTTGTATCCGCTTTGCTCGTTGTTGAATCATTCCCACAGCCCGCAATCAAAAGTAAAGCGCAAAACATCACCATCAATTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATAAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATAATTTTAGCATATATAGTAAGCGTTTACAAGTTTGCGCAATTTCTGTCGATGTGTGGTAGCGTAAAAAGTACTGGAGGCCGACAGATTTGCGGGATGCATTGGGAGAGAATGAGAGTGGGGGATATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGTCGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCCTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCTAGCAACTAAAACATAGATAGTAGCATTATCATAAATTTCCCAGACAATAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATTAATCATATAGCAAATGTTAAGTAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAGCAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGAATCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACAGGAATTGAGAAATCTAGTCCAGAAAGATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACTTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 220454-220107 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVF010000002.1 Listeria seeligeri strain FSL L7-0748 NODE_2_length_432604_cov_27.263288, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 220453 29 100.0 35 ............................. TTTTCAATTAATGCTGTAGACATCATAGCTTTTGC 220389 29 100.0 34 ............................. TAACTAAGCAGATAGAAAAAAGGATGAGACTTAG 220326 29 100.0 36 ............................. AGAATACATTATGTATCAATTTCTTAAGAATAAAGT 220261 29 100.0 34 ............................. CTTGGTTGGTGGGACTATAATAGTATGTGCCTAA 220198 29 100.0 34 ............................. TTTTTTTCAGATATATGCAACAAATGAATTTCTC 220135 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ==================================== ================== 6 29 99.4 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCCGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTATTTTAAGAAAATCTATAAGCAGAGACTCAAAATTGGGTCTCTGCTTTTTTGTGCGTTAACATCTGTCGACCGTTAGTAGCGTAGAAAACAAGGGGAATCGACAGAACATTGAATTCCTTTGTGGGAGAATAGGTTTGGTAGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAAGTCGACAAAAATAGGCGCTTGAGGTAAGATTGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAACCATCAGAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGTATTTATCCCGCTACTTTTTCTACTAATCCTACTAGCTAGTTGCTCCGCGCCTGATGAAAAATTAACAAAAGACACCAAGATTTTTAAAGAAGGCGTCATCAACGCGGATTATCAGGTTCCAAAAAACCTAGCAGAGCTTGAATCGAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAATTGGTAAAGGAAATAACACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCAAATCAGGTGCGACAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAATACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGTGGAGGACATGACGCGGATAAAGTAAGTTCTATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //