Array 1 33477-33143 **** Predicted by CRISPRDetect 2.4 *** >NZ_BANH01000078.1 Gluconobacter thailandicus F149-1 = NBRC 100600 strain F149-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33476 29 100.0 32 ............................. GCTTTCTTTTTTAGCGCTCTGCTTGGACCCGT 33415 29 100.0 32 ............................. ACTGCACGACATGTCTGAACGTGTCTGACGGG 33354 29 100.0 32 ............................. AGCCGCCTTCCGCGTCAGATTGGTATTGAATG 33293 29 100.0 32 ............................. CTGTCTGGCGCTGATCTGACTCCAGAAGGCGG 33232 29 100.0 32 ............................. GCCCGCGACAAAACAGGAGGCTGCTCACCAGG 33171 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTGTTCCCCGCACGTGCGGGGATGAACCG # Left flank : GCCGTTCCCGGTTATACCGAAGCGCGGCCTCCTGCAGCACGCGGATCATGGGAATCATGGGGCTGCCCATATCCCTGATGCCAGCGAGTTCCCGGTTGCTGGCGGAAAGCAGGGCCGCCAGCGAACCGAAGCGTTCCAGAAGCGCCGGGACAAGACTTTCGGCTTTTTGTTCACGACCCGTAAAAAGATGGACGATCAGCCTCAGAAGTGTGTCGTCGTTCAGATGACGCCCTCGCCCACTCAGGAGTGCAACAGGAGCAGGAATCGTTTCGTGATCCGCTGCCTCCGGCGCGGCTGTAGCTGGTATGGCCTGAAGGAAGGGGCTTCCCAGACAGTCAGAAAATCCATCTTCAGAAGGCTGAGTGTTGGTCATTCGTTTTTCTGGCACTGTAACCCGGACGAGATCAAGGCGTCGTCAGCCTCTCTCGGAAAGGTTGAAAAAATCGGTAGATTTTTCGGGGGCTGTTTTTCTGTTGGAAAACAGTTATCTAACAGGAAGA # Right flank : GGCTCAGGAGAACACCAGCTTTCTTTCATTTTATGTTCCCTGCATACGCAGGATTTTTTTTGAAGCAGGGTGTGAGGCTTAAAGGAGACCTTCCTGACGTAGGCTGCTGAGTTTTTTGTCTTCATTGCTTAGAAGGATGTCATGCAAGACGATGGAAAGTGGCTTAAGTGCGGTTTCCAGAGTTCTTGCAGCCGTTGACAGGGCTGGTGATCTGAGAGCGGGTTGGACATGCAGGCCGATAATGGCGGTAGCATGTAGCGCCAGTGCGCGAATGGCGATGGCGCGGTTCAGGAAGGTGATATCCTCCTCTTCGGGGGCCGCTTCATCCGCAAGGAGGCGGTTGCGGTTATCCAGATAAAGGATGCGAAGCTGTCCGGAAACCGCGCCTTGTAATGTCGTTTCAAGATAGCTTGTCAGTTGTGGCCAGTTCCCCAAAACAGGACGCTCGCGGCTTTCGGCAGAGGCAAGACGTTCTGCGGCGACTGACGGAAGGCGAAGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 41515-40937 **** Predicted by CRISPRDetect 2.4 *** >NZ_BANH01000042.1 Gluconobacter thailandicus F149-1 = NBRC 100600 strain F149-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41514 29 100.0 32 ............................. GCCAAACAAGCCCACTTTATACCCTTCTGTTT 41453 29 100.0 32 ............................. GCCTTCTTAACCTTCACGTGGTTTTCGACAAG 41392 29 100.0 32 ............................. CACTGCCAGTTCTCCAGTTCGATCAGCTCGCC 41331 29 100.0 32 ............................. GCTGCGATCGCCTGCGTCAGAATCGTGCCAAC 41270 29 100.0 32 ............................. ACAGGCGATAACGATAACGGCACGATCCTGCT 41209 29 100.0 32 ............................. GATAGTCTGGCTGTGACAGGATCGATCGGCAT 41148 29 100.0 32 ............................. GCGGAGTTCGCTCGCCGCCAGCAGGATACCAC 41087 29 100.0 32 ............................. CAGGTAGATTTTCCACTGTAACTGCCATTCTG 41026 29 100.0 32 ............................. TAGCCCGGAAATCCCATGCGGTTGATGACATC 40965 29 79.3 0 .......T...........A.G.A..T.T | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.9 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CGCCTCGTCCCCATGATCGAAGATGTTCTCTCCGCAGGAGGCCTGTCACCCCCTGAAGCACCGGAAGAAGCCATGCCTGTGGCCTTTGAAGACCCGGAAGGATTGGCCGATGCTGGTCATCGTGGTTGAAAACGCTCCACCGCGACTGCGAGGGCGGCTCGCCGTCTGGCTGCTGGAGATCCGCGCAGGAGTATATGTCGGTACCTATGGCCGAAAAGTACGCGAGATGATCTGGCAGCAGGTCTGCGCCTATATTGAACAGGGAAACGCTGTCATCGCATGGGCTGCTCCCAATGACGCAGGCTTCGAGTTCGACACCTGCGGCGCCAACAGACGATGCCCCGTGGACCTTGACGGATTTCGTCTGGTCGAGTTCGGTCCAGAAGCTGCCCTCCCCCTCCTGCCCGGCCCCCTCAATTCACCACGAAACCGACGCTGAAAAATCGGTAGCTTTTTGAAGTGGAAGATTTGCACCCATAATCATATACTTACAAACAAGG # Right flank : TTACCGTCAGGCTTCTGAGCCCTGCACAACCGCACTCATTCTCCCAACATTCTTGCACACAAGGAGACAGATCATGAGCAAGCTCAGTAAAGAGGAACGGGACAGCCTGCCTGACAGGGAATTCGGGCTTCCTGAAAAACGGGCCTATCCCGTCGATACAAAGGCCAGGGCACGGAATGCGAAAGCCCGTGCCACGCAGGAGATGGAACGGGGGCTGCTGACACCGGAAGAACGGGATGAGATTGACCGGGCAGCAGATCGTAAACTGAACAAAGACTAAGCCAGAATCAGAAACGGCCCCGGATCACTCCGAGGCCGTTTCATCATTCAATTCCGCAGTCAGTGAGCCTGCGCTGCCCGCAATGGAGCATCTGCCGGAACATCCTTGAGCGGAATGCCCTGATACTTGCCCGTCAGGGTCTTCAGGAACGCAACGATGTCTGCAACATCCTGATCACTGATATCATGATCGGGCGTTTCGTAACGCGCCATGGCACGAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 176456-176954 **** Predicted by CRISPRDetect 2.4 *** >NZ_BANH01000028.1 Gluconobacter thailandicus F149-1 = NBRC 100600 strain F149-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 176456 29 100.0 32 ............................. CCAATACGCACGCCCTTCTTCGTCTTCCGATA 176517 29 100.0 32 ............................. TCATTGGGCAGAACTGAGACCTGCAAAGGAAG 176578 29 100.0 32 ............................. ATAGGAGTCATCCAATCTAGCGCCATTCCTGC 176639 29 100.0 32 ............................. ATGAAAACACCAACGATCAAAACGCCAATTCA 176700 29 100.0 32 ............................. GTCCATAACGCTAAAGCCCGCTTTCTGGCATC 176761 29 100.0 32 ............................. ACGCCGGCAGCCGTGTAGCCGGTCAGAGCAAT 176822 29 100.0 32 ............................. GACGGCATTTTTCAGAAGCACGCGCGCATCAT 176883 29 93.1 14 ................T........G... CGTGGGTCTCCGGC Deletion [176926] 176926 29 79.3 0 ...........G.AA.......C...GG. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.9 30 GTGTTCCCCGCATGTGCGGGGATGAACCG # Left flank : TCGGGAACTGCGCGTCCCGTTCCGGACGGCTCATCATGTCACGGGGCGTCTGGTCGGACTGGCCGAGCAGCGCGGTTGTGATCTGGCGGATCTGTCCCTTGAGGACATGCAGGCCGTAGAGCCGGGAATCAATGCTGGTATTTTCGATGTTCTGACGGTTGAATCCTCACTGGCTTCCCGCACCAGTCTGGGCGGAACTGCTCCGTCCAACGTGCGCCAGCAGGCTCAGGCCTGGCTGGAGAAACTTGGAGACGCTGCATGAAACGTTTTCTGCTTGTTGGCCTGACCCTCGTAGCGCTCAGCACTGGCCTGAGCGCTTGCGGGAAGAAAGGGGCGCCACATGCACCCGGCCCCGCTTCCGACATCACCTATCCCCGGAGTTATCCGCCTGAATAACGGGCTTTCAGATAAGTCTTACAGGGGCCGAAAACAGGCCATAAAAATCGGTAGATTTTTGAGGGTGGAATTTTCCCTTTTCTGTCAGTACCTTGCCAGGAAGA # Right flank : GACTACTGGTGGCCGCAACTTCGATCTCGCCAAATAGTCCTCGCCTACTCGGGCGTGGATCTACCGCGAGAAGCGATTCCACTTTCTTCAGCCTCAGCGTTTTTCTGAAAACTCTACAGATGCAACAGCCGCCATCAGCTGTCCGCCAGAGCCTGGACTACCAGCGGGTGCGTCAGAACGTTTTCTGCAGGCCAGCCCATCGCCCTGAGCGCTCGAACCCCCTCTGCACCATCCCTTTTGGAAAGCTTCTTTCCGCTCTCATCCAGAATAAGAGCGTGATGCCTGTACTCAGGTTCAGGCCATTTCATCAGGGTCTGAATTACACGATGAATGGATGTCGCAGCGTAAAGGTCCTGCCCTCTCGTGATGCAGGTCACGCCCTGAAGGGCATCATCGTGGGTGACGCACAGATGATAAGACATGCCCGTATCTCTGCGTCCCAGAACAATATCACCAAATTCATCCGCACGCCCCGCAATCCGACCATGACCCGCTTCATA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //