Array 1 51975-53584 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUMM01000009.1 Floccifex porci strain LKV-178-WT-2G seq9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 51975 36 100.0 29 .................................... CTTTTCAATATCTATTAATGGTTCCGTTG 52040 36 100.0 29 .................................... CTAGTAGAAGAAGATATTGCGGTATTAAC 52105 36 100.0 29 .................................... ACACTCATTGATAATGGATTATCCCCAAC 52170 36 100.0 29 .................................... AGTAGACAATCGAAAGATAAGCGACCAAC 52235 36 100.0 29 .................................... GAATTGACTAAAGAATTGCAGATCATGAC 52300 36 100.0 29 .................................... CTGTACTCAACTCTGAATCAAGTATCAAT 52365 36 100.0 29 .................................... AGTGATACAAATAAGATGATCATCAGCCA 52430 36 100.0 30 .................................... CGATAACCTTGAATCATATATAGATAAAGA 52496 36 100.0 30 .................................... GTCTTCAATGTAAAGGAGTAAGTTATGTGG 52562 36 100.0 29 .................................... TGGAAGCAAGCCATCCACATGATGATTTT 52627 36 100.0 30 .................................... TATGCAATGCAGATGGTTTTCATTTTGAAG 52693 36 100.0 30 .................................... GGATTCAAAGCAAAACAAACAAGGGTACAT 52759 36 100.0 30 .................................... CATATGTTTGGAGACAAAAGACGTGGGTTT 52825 36 100.0 29 .................................... GAATTAAGACATGGCAACAGCAGTTCAAG 52890 36 100.0 30 .................................... AGGAAGATTGGGCGGATGAACGTAGATTCA 52956 36 100.0 30 .................................... TTGGTGGACATATCGCAGAACACTATCACA 53022 36 100.0 31 .................................... TTCATGTTCAACTAAACCAAAGAAGAAAAAG 53089 36 100.0 29 .................................... CAAAACGCATGGACGGCTTCACAGACCGC 53154 36 100.0 31 .................................... CTGGTGATGAATCATAATGAATAAGTATCAG 53221 36 100.0 30 .................................... TTGAATCTCTTTGATTGAGAATCCTCCTCC 53287 36 100.0 29 .................................... TTATCTGCTGTTAATCAATTAGGATTATC 53352 36 100.0 30 .................................... ATACGGATTGTCTGACCAGCACTGTATCGA 53418 36 97.2 29 ..................T................. GCATATAAAAATAAAAACGTTTCAAATAA 53483 36 94.4 30 ...T.............C.................. ATTATCAGTATAGATTCTGTAAGTTCATAT 53549 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 99.7 30 GTTCTTGAGGACTACATTAATTGTTATTATTTGAAC # Left flank : TGATGATTTTGATATATCAACATTACTTCAATCATTCAAAATTAATACAGATATGTTTTCAGAAACAGATAAATACATTGTTTTATATAATTTGCTTCTCTATTTAAATAGAAACGAAAATAATATTGTTCTTATTGATTTTAATATTCAGGAAAAAGAATTAAATTGGATAAAGAAAATTGATAAAGATCATAATTTTTTATTAATAGACAATGAATCTATTTTTACAGATATTGCTGATATAAAATCTATGGCTTTTGTAAGGCTTTCATATCACAATTTTTTAGAAAAAATAAATATTCAGCGTGATGATTTCAACCGATTATCTTATATATTTCATACATTTTTCGAAAAGAATATTCAATATCAAACTGAAAAAAATATCGAATTATATAGAAATTTTGAGGATAAAAATACAACTTTTTTGATTAAACCAATTGACACTGAATCTGAATATTTGGCTAATATTAAGTAAAAATCATGGTATAATAAAGCCAGCT # Right flank : CTTAACATGGATATTTTAAACAATTTAATTGTGAGAAAGATATTAGAAAATAATTTTAATGACATTATTACAACTTATTTTTGTTGTGAATTTCAGGATAATAAAATATGGCTTTATGATTTATTTGTTCATTCAATTATCAAATTAAATATAGTTTACAGAGGGAAGATTAAAAATTATGAAAGAGATAAGATTTAGAAAAGAATTATATTCAAAGGTTGCTTTGATTAAGGCAGCCTATAATTTTTCTGATAAAGCATATATTCATTTGGATGCAGATGAAAGTTATTATTATGTAAGATTAGAAACTAAATTAGATGGAAAAGAGATAAGTGAAAATGAATTTATAAATGAAATGCTTTCACAAAGTATAAGACATGAAGTATATCTACAAACAAAGGATATTCGAGAATTATTGTTAGCTCGTGCCATGTCAACTAGTTTAGTTGCTAAGGAAAATGTTTTAAATGAATCAGTGGTTCCTGAAGCATTTTCAGAAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTGAGGACTACATTAATTGTTATTATTTGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 6213-7833 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUMM01000006.1 Floccifex porci strain LKV-178-WT-2G seq6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6213 36 100.0 30 .................................... CGTATCCGTTATCGAACTTGAAAATGTAAT 6279 36 100.0 30 .................................... TTATTAAGCCTTTTATAATCGTAAGTATAA 6345 36 100.0 30 .................................... CACTTGGTGTAGTTCTTAGTTCTGGTTCTT 6411 36 100.0 30 .................................... ATGTATTGTCAATCAATTCAGTTGGGAATA 6477 36 100.0 30 .................................... TGAATAAAGTTGTATATGGAACAACAGTTT 6543 36 100.0 30 .................................... GGACAACAATTGTACTTGTCACACCAATAA 6609 36 100.0 30 .................................... CTATTCTAAGTGGTGTCATGGCTATTCTGC 6675 36 100.0 30 .................................... TCTTTCTGGATCTTCGTTATCAGGAACGAA 6741 36 100.0 30 .................................... TAGCAAATAATGATTTACCATTCTTCCTGG 6807 36 100.0 30 .................................... AGGGAATAGAAACTTCTGCGTGATTATTGA 6873 36 100.0 30 .................................... ACGATTCTTCATCATAACTATAGTTATTAC 6939 36 100.0 30 .................................... CTGTTTCATCGTCAAATGAGAATCCGTTTT 7005 36 100.0 30 .................................... CGTATCCGTTATCGAACTTGAAAATGTAAT 7071 36 100.0 30 .................................... AGATATTTAGACAGAACATTCATTGCATGA 7137 36 100.0 30 .................................... CATGGGAAGATATTCTATATACAACTTATT 7203 36 100.0 31 .................................... GAGTGATGGTTGTATTTGTCCCTGGAAACCA 7270 36 100.0 30 .................................... AAGCGTTTGCAGATGTATACTGTAATGGTA 7336 36 100.0 30 .................................... CATTCACATCCTGATAATATACTTGTTTGT 7402 36 100.0 30 .................................... TGACGAGTCTTGGAAGATTAAGACGAAACA 7468 36 100.0 30 .................................... GCTCAATGTTTTCATGGCCTGTTGTGGATT 7534 36 97.2 30 ....C............................... AGAATCGGTTATAACTTCCGTCACATACAC 7600 36 100.0 30 .................................... GGCTGCCTTTTTTACAAGTCCTGATGAGAA 7666 36 100.0 30 .................................... ATACAAAAGCAGACTATTATCAAGATTCAA 7732 36 100.0 30 .................................... GATATATCACAGTCGGATACCAATTAATCG 7798 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 99.9 30 GTTTTGTTCTAGCGAAAAAATTAATGGTAACAAAAC # Left flank : GACCAATTCATTTCAAATTATAAAATCAATTCAAAAAATATTACTACTTATTCCAGCCTGATAGGAATTGATCCTGGAATCCTGGTTGGACGACTCCAGAAAGAAAACTATATTCCTTATAATTCTTATAATCATCTAAAAAAGAAATATGAATTTTAAATTAGAGAAAATGTCTAATAAAACATTTTCTCTATTTCTCTTTTTCAAATTCTAATTCTTTTTAATATTTTGTTCTAGTGAAAAAATTAATAGTAACAAAACAGAAAATAATTTGATAAAATGAGATGAAATGTATGGCAAAATATATAAAAATTAAAGGAAAAACGCCGAACGGTGGAGATTATTCAGAAATATATTTCTTTGATGATAAAGGGAATCCGATAGATCAAAAAAATGCTTCTCGTTGCGTTATTAGAGAATGCAAAGAAAACGGAGAATTATTAAAAGAAACATTCGCAACTTGCGAATAGAAAGCACCGATTACGCACAATATGCATATT # Right flank : CACTGTCTGAAAGATTCGATTTGAAATGTATATGAACCGCTCCCGGTTGCATACCATACGATATAACGTCATTTGTCAATGCTTGGATTGACTGTATAAAATTCTGTACAAGAATCGAAACGCTGGAACATACAATGTCGTAACCTATCGGCGCATATCCTGCATGACCATTGATTTCGATTTCTCGTTCTGTGATTGTGACTTGAATCATGTATATCACTCCATAAAAAAAAGCACCTAGCTAATTTGCGAAGTGCTTTCTAATACCACATAAGTACCTTTTCTTTTGGAAAATCATTATTTTCTACACATTCTTTTAAAGCTTTTATAGATTTTTTAAAGTATGACTTTAAATATGATTTCTCATCTAGTTCACAATATTTTTTTTCTATAACTTCTTTTTTTTCGATATTGTATACGATTTTTCCTATGTCTTTTTCATTTCCTTCCGGGAAATATTCGGCATATACTATATTATCTTTTTTTGTTACGTTTGTTAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTTCTAGCGAAAAAATTAATGGTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 9366-8406 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUMM01000006.1 Floccifex porci strain LKV-178-WT-2G seq6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 9365 36 100.0 30 .................................... CTGATGTTTTATATTTATTTTTTAACTGCT 9299 36 100.0 30 .................................... TTACAGTGTGTTCACTGCATCCGATTATGA 9233 36 100.0 30 .................................... AAGTGGACATCGCAATGCTGCCAAATAACG 9167 36 100.0 30 .................................... ATGTGCAATAGAAGGTCGATATCGAAGTCT 9101 36 100.0 30 .................................... GAAAGGAGGACATTACCATGATTAAAGCGT 9035 36 100.0 30 .................................... AAATAATGTAACAATTGCCATAAGCATTAC 8969 36 100.0 30 .................................... TTATTGGTGTGACAAATATAATTGTTGTCC 8903 36 100.0 30 .................................... CTTTTCCAAGCATAAGCCTTTGCCATGATT 8837 36 100.0 30 .................................... ATAAGAATACATCAAGCGTGTCTAAACTGA 8771 36 100.0 30 .................................... CGACTTATGTTGACGTAATAGAAACATCAA 8705 36 100.0 30 .................................... ATGGTGTTAAGAATTATCACATTGATATTA 8639 36 100.0 30 .................................... TTGCCTTTTGTAATTCACTGCATTCTTCCA 8573 36 100.0 30 .................................... TGTTCGCAACAGACACTTACATGATTAAAT 8507 36 100.0 30 .................................... AAATGGCGTCAGCAGCAGATGAAGCTGTCA 8441 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 100.0 30 GTTTTGTTACCATTAATTTTTTCGCTAGAACAAAAC # Left flank : AAATATTATTAAAAATATTAAAGCCATACTTTGCATTAGAAGAACAGATGGATGAATACGATCTATCATTAGAAGAATTAATTATTCAACAAATAAAAATAATTGAATACATTCAAGAAAAAGATCATTCAATTGAAAAATATTTTATATATGTAGATTCAAAAATAATTTCAAAACAAATAATAAATGAATTAAATTCTTTAAAAAATTCTATTATTTTAATAAACGATACCATTTGGAAAGAACAATATGAATTGAAAGATATTGTTCTGATGGAAGATACAATTCTGGATTGTGCTGATTTTGATTTGATGTATGGATATTTTGGTGAAAACAATGGTGAATTGCTTACTTTAAAGGAGGTAAATAATAAGATTATGAAATACATAAAGCATTTTTATAAAGGAAACAAAATAGATTTGATCAATGACATAAATAAACATTCTCTATAAATAACTACATTTTATAAAATCTTAAATTTATGGTAATATGAATTTGAG # Right flank : CGATTAATTGGTATCCGACTGTGATCGCATAAGCACAATTATCAAAAGGAGGCAGATGAGTACTATGGTAACCTTAACAAACGTAACAAAAAAAGATAATATAGTATATGCCGAATATTTCCCGGAAGGAAATGAAAAAGACATAGGAAAAATCGTATACAATATCGAAAAAAAAGAAGTTATAGAAAAAAAATATTGTGAACTAGATGAGAAATCATATTTAAAGTCATACTTTAAAAAATCTATAAAAGCTTTAAAAGAATGTGTAGAAAATAATGATTTTCCAAAAGAAAAGGTACTTATGTGGTATTAGAAAGCACTTCGCAAATTAGCTAGGTGCTTTTTTTTATGGAGTGATATACATGATTCAAGTCACAATCACAGAACGAGAAATCGAAATCAATGGTCATGCAGGATATGCGCCGATAGGTTACGACATTGTATGTTCCAGCGTTTCGATTCTTGTACAGAATTTTATACAGTCAATCCAAGCATTGACA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTTACCATTAATTTTTTCGCTAGAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //