Array 1 125044-124617 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_PIJH01000004.1 Geobacillus thermodenitrificans strain JSC_T9a scaffold_3, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence               	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	==============================	=====================================	==================
    125043	    30	  93.3	    36	....G............G............	TTCCTTCCCTCTCGCTTTGCACCAAGCTAAAAAATC 	
    124977	    30	 100.0	    37	..............................	CCGTTCGCTGACGTTGTATGGTCAAAAGCAAACGGCG	
    124910	    30	 100.0	    37	..............................	ATTGTTTTTGTTTGAACGGATTAATCATTTATCTTTT	
    124843	    30	 100.0	    36	..............................	CGTCTAAGCGTCTACCCTTTCCGCCACCGCAGGAGT 	
    124777	    30	 100.0	    36	..............................	TTGAGCACGTCAAACAATTGCCGAGATACCAAGGAG 	
    124711	    30	 100.0	    35	..............................	AGCTAAACCTTTGATACGAGCATGGGCTTTTTCTT  	
    124646	    30	 100.0	     0	..............................	|                                    	
==========	======	======	======	==============================	=====================================	==================
         7	    30	  99.0	    36	GTTTTTATCGTACCTATAAGGGATTGAAAC	                                     	       

# Left flank :   CCAACAACGGGGCTTGACGAGGCGAGGCAGCGGCGGTCGTTCGGGCTGTTCGAGACGTATTTGTGATTATTTGAGGAAGAGGAACGCCAATTACGAAACGAGGTGAACCAATGGAGACAAAGGAAGCGAAACAAGGAATGGAGTGAATCACCTCGTACGAGCAGCAAGGAATCGAGAAAGGAAAGGTGGACACCGCGAAACGGATGGTGGCGAAATGATGCGACGTGACGGCGATGGGTGAGCTGCTCGGATTGCTGATGGAAGTAGTGGACAAACAGCAAAAGGAAAAGGCTCATGTGAGGGCTCGAGGAAGCAAGAAGCGAACTTCGTTTGTCGTCGACCTCCAATCGTGCAAAAATCCCAGGGGGTCGACGACACTTATTTTTGTTGCTGATTCCCTACAGCCATCATGGACGAACATGATTGACGGAATTTTTCGACCGTGTTATTCTGAAGGTAACATGGGATGAAAAAGCTTGATATAACAGCACTTTTTGGGG
# Right flank :  GATACTGTAAGAGTATACAGTTTATCGCCATGCATTGATTGACGAAGTGGTGGCGGAAATCCATCGGTTAAACGAAGAAAACTTCCGCGTACGCCAACATATCCAATATGTACACAAGTTCCAAAACCGGAAAGCATGGAGCTGTTTAACGGCGATGGATGTCAATGAAATCAAAGAACATCTTGCACCGCTCATTGTTCCGCTCAACGATGATGAACTGGCCAAGCGCTTTGATTTGCTGATGTATACAGTTGAGTTGGCGAAGTTGCAAACAAAAAATGCGACGAAGCCAATTCGGAGCATGATTCGCACCACAGAAGCGTTATCTAAGCTCGGATCGATTCCGCAAGTGCAGGAACAAAAATACATCATCGAAAAGGTGTAGACGGAAGAGTTTTGGAGCGAAGCCGATAGTTTTGAATTGGAAGCTGTTCGCGAAGCGTTGCGCGATTTAGTGAAATTCCTTGAAAAAGAAACACAAAAATTTTACTATACGAACT

# Questionable array : NO	 Score: 9.21
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTATCGTACCTATAAGGGATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:66.67%AT]
# 	Reference repeat match prediction:         R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.50,-1.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,9.37   Confidence: HIGH] 

# Array family : I-B [Matched known repeat from this family],   
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