Array 1 223092-224341 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJAJK010000003.1 Escherichia coli strain 21-MO00806 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 223092 29 100.0 32 ............................. CAAGACGACGCTCAACGACATTGCCGACGCCG 223153 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 223214 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 223275 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 223336 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 223397 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 223458 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 223519 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 223580 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 223641 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 223702 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 223763 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 223824 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 223885 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 223946 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 224007 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 224068 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 224129 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 224190 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 224252 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 224313 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 249877-251064 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJAJK010000003.1 Escherichia coli strain 21-MO00806 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249877 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 249938 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 249999 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 250060 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 250121 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 250182 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 250243 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 250304 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 250365 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 250426 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 250487 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 250548 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 250609 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 250670 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 250731 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 250792 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 250853 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 250914 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 250975 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 251036 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //