Array 1 42285-39955 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020557.1 Paenibacillus larvae subsp. pulvifaciens strain SAG 10367 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 42284 32 100.0 35 ................................ CGGTGTTATCCCGTGGGTTCGCCAACTTAACAATA 42217 32 100.0 35 ................................ AATTATTGAATAATTTTGTTTCCATAAAAAGAGCC 42150 32 100.0 33 ................................ TTGCGTTGCAGGTGGAAATCGCGGAATTGGCAA 42085 32 100.0 36 ................................ ATAAACAACCGACTATAATTCCAACCTCCTTGTGTC 42017 32 100.0 37 ................................ CATTCAAGTTTTGGTTAAAAGCAGATGTCGATTTCCC 41948 32 100.0 33 ................................ TATTACGGACAAAGAAAAAGCTGTAACCGCGCT 41883 32 100.0 34 ................................ TTCTAGTGGATTATTCAATTTAGACACTCAAATC 41817 32 100.0 34 ................................ ACTTAATGTGGATAAAGCTTTATCTAAGGATGGT 41751 32 100.0 37 ................................ AGGCTTGACTGATACGGGCCAGAAACGGCGGTTTCCT 41682 32 100.0 37 ................................ TGAGTGAGTCTGATATAGTTGACTCCGGATATGTTCG 41613 32 100.0 36 ................................ GTCTCGGTGTCAATGAAGGGAAGTCTAAAGTCCTCA 41545 32 100.0 34 ................................ ACTCTATCCCCTCCTCAATTAAGGAAATCATGAA 41479 32 100.0 38 ................................ TTTTATTTTTTGCTCAATAATAGCTTCGAGTTCTTCCA 41409 32 100.0 34 ................................ TACCCTAACTGACCTTGTCCCTGAGCAGGTAGCG 41343 32 100.0 37 ................................ AGAAGACAGGTCAGGTGATTGGGGAATCCTTTAGCAG 41274 32 100.0 34 ................................ TGAGATAGCGGGCACACTTAATACCTTCCACTCT 41208 32 100.0 37 ................................ ATTTTTCACCCTCCTCACCCGATTGCCGCTAGATACT 41139 32 100.0 38 ................................ AATCACCATGCTGATCACAGCGCTGATTTTTGGAAATG 41069 32 100.0 38 ................................ TTCTGTCAGTTTCCCCTCATGGCCAACCCGATGCGCGT 40999 32 100.0 38 ................................ AACATAGATTCAACAAGCTTTCAACATAGTTTCCACAA 40929 32 100.0 34 ................................ TCCAATTACCGGACAATGGCCAAGAAAAAAGAAA 40863 32 100.0 35 ................................ TTCGGGAATACCCCCTTGCATCATGCTTTCGTTGA 40796 32 100.0 35 ................................ TCCGGCTTGTTGGTTTATGTATCTCTTGTTGTTAC 40729 32 100.0 36 ................................ ATCATCTAGTTTTTCCCACAACTCATCCAATTCATA 40661 32 100.0 34 ................................ TATTAATGAACTGATAATACTCGAAGTGCTCCAA 40595 32 100.0 35 ................................ CCTAACGTTAGCATGGAGCTTTCAAGCTATGTGTG 40528 32 100.0 37 ................................ TTTCCAAACGGAAAAAATTATGTTTCAAACCACGCTC 40459 32 100.0 34 ................................ TGCCTGTTGCAGCCTCCTCACACGCTCGTCTAAC 40393 32 100.0 36 ................................ ATTTTGGGTGATTCTAGATGACAACCCAGAAAAAGC 40325 32 100.0 36 ................................ TCCCTGATCCAGGAGGTATATAGGTGCCCATAAATC 40257 32 100.0 33 ................................ GATAATTGGGTGAAATTTGTTAATGTGGGCAAC 40192 32 100.0 36 ................................ ATCATCGTGGATGAATATGTGGCTCTACTTGAAAAA 40124 32 100.0 37 ................................ TTAATTATGTCGGTAGTGATGGAAAGCATTATACGGC 40055 32 100.0 37 ................................ TTAAATGAGTTTGAAGAGTCTATAAATTGAGTTTTTA 39986 32 93.8 0 ..................A............C | ========== ====== ====== ====== ================================ ====================================== ================== 35 32 99.8 36 GTCGCATCCTATACGGATGCGTGGATTGAAAT # Left flank : GGGAAATACACGCACCAGTTCGCAACATACATATTAGCGCGACAAGTAGTCATCTTTGCAAGCAAGTAAAGCAGCTTCTCTTGGTTAGGGGCTACATCAATAGCGGGCATGCCTGCTTCTGCATTTGTTTTCAGTATTGTATCCATAGCGGAATCAGACGCGTGAAGCAAAAGATAGCAATAGAAGCTGATATGGAGTATTATGGTTATAAAAAAAGTAGATACCTCTGTAATCGATATTTTGTCTTGGCAATATTTTTTACAAGTGATCGGGGGGATATTATGCTATCAAATTATTATCGAGGTTAAGGACTTAATTTCTAGTGCGAATGTAAAGTACACATGAAAATCCCAGGAGATTCGCACCATCATTTTACCAAAAATATACAGATATCTAGTTGTGGTTATTTTTGATTGCAATCATTTTGAGTTAAAAGATCATTATTTAATCGATTTAATCAAAAAAACATTCTATTTTGATTGATTTGTTCAAATTTCGGG # Right flank : CTGGGCCTTCACCCACCCTAAGGGTGGGGGCTAATTAGTTGAGTCATATACGAATGAGCAGTCCGTTTTTTTACACCATCTAAACATACGAAGAACGGTATGTAGATATAAAAATGAGCTAAGAAAGCTCAAGAACAAATGGCTTGGAAAGATTCAGCACTAAAACAAAATTCTTCTAAAAATCTCATAAACAAAAGCATCCTCACCGACATTACTTCCACTCTTTTTGGAACGTTTTTTATGTATTCCCATAAGGGCGTCAAAGCATGAGCGAAAGAGGCAGAAAACACATCTTTGGAAAAAGTAGAGGCAGAAACCTTAAAGTCAGCAGTGGGCGGACCGTTTTCTAAGGCAAAAATTTGGGGGACCTATGTCTCTTAGAAGAGCTGTTATCAGTAGGAGGAGTGGATGCCAATGCGCTCGGAGTACCGGCTGACCAAATATCGCACATTCCTAAATTTTATAAAAATTACTCCCTATTAATTGATCTTTATTTTTTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATACGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.50,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 50571-49043 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020557.1 Paenibacillus larvae subsp. pulvifaciens strain SAG 10367 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 50570 32 100.0 35 ................................ TTGACCAAGTAGAGTGGACTAGGTGGAGATAACCT 50503 32 100.0 38 ................................ CCGGATTTGGTAACTGCAAACCGGAAACTTGTTGCGTT 50433 32 100.0 37 ................................ CGATGCAGTCCCCCATACGATGCGCTCGCCAGTTTCC 50364 32 100.0 34 ................................ CGAGGGGGAGCCTATACTGAAGGGAAAACATTTG 50298 32 100.0 37 ................................ TATGACCGGGTATCTGCTGTTGCAGAAGCCGAAGGGT 50229 32 96.9 37 ..................A............. AGTCTCATTAATTTTATGAACTGTATCTACGGTTACA 50160 32 100.0 36 ................................ ACGGTATGAATCGTAAGTCGCCTGACTCACGATATG 50092 32 100.0 36 ................................ CGTTCTGTGGCCAGTGTCATATGGCGACAGGCGAAT 50024 32 100.0 35 ................................ TTGACCAAGTAGAGTGGACTAGGTGGAGATAACCT 49957 32 100.0 38 ................................ CCGGATTTGGTAACTGCAAACCGGAAACTTGTTGCGTT 49887 32 100.0 37 ................................ CGATGCAGTCCCCCATACGATGCGCTCGCCAGTTTCC 49818 32 100.0 33 ................................ CGAGGGGAGCCTATACTGAAGGGAAAACATTTG 49753 32 100.0 37 ................................ TATGACCGGGTATCTGCTGTTGCAGAAGCCGAAGGGT 49684 32 96.9 37 ..................A............. AGTCTCATTAATTTTATGAACTGTATCTACGGTTACA 49615 32 100.0 36 ................................ ACGGTATGAATCGTAAGTCGCCTGACTCACGATATG 49547 32 100.0 36 ................................ CGTTCTGTGGCCAGTGTCATATGGCGACAGGCGAAT 49479 32 100.0 34 ................................ AAAAACCCCGATTATGTGGCGGCCGTCCGCACGC 49413 32 100.0 34 ................................ AATATCAGCCATAGTTAAAGACTTAGTTTCAGTT 49347 32 100.0 38 ................................ TTTACAAACGCCAAGCGTTGCTCGTAGGTGTTGGGAGC 49277 32 96.9 34 ...........T.................... TATAACTCAAGAGAGTGGCGAGCTTTAAGAGTTG 49211 32 100.0 38 ................................ ACAAAAAAGCAAGCTGGGATCGTAGGGTTTGCTTTACT 49141 32 96.9 35 ..................A............. TTTGTCATCCGCAAGAAAAAGGAGGCGTAAGGCGT 49074 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 23 32 99.5 36 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : ATTCAGAGGTTTTGGAGGTCTTATGAATGTTCCCAAAAAGCTTTTTTATATATTGCAATACCTAGTTCTTTTTATAAAAAAGCATTATCGACTTCATTTTTCAAAAAAAATGAGATTTTTCAGTGACGAATTTACTTATTTACCTACTAACATTTGCAGAATGTTAAGCACATGCTTCACTTTGTCAGAAACTTTTTTTAAATGCGCGTTCCCTTTAACCATTTTTTGGTATCCACTATTCTTGAAATATGTTCTTCTTCTCCTTTTATTCATCTCCTACCTTTATAAAGTGAAGGAATTCAAAATCCTGCCTATTAGAACATGGATGCATAAAGTGTTTATTAAAGATGCGTTATTTGAGTTAAATGGAATCATCCTGATTCTAATCAACTTAGTCATATTATTAGAAATTAAGGTTTTAGCTATTCTCCTGTTGCTTTTTATTTCTCAGGCTTGGATGGGCTTTTTCCAGAGCGCGACGTGCGTCAATACGAGTCAAT # Right flank : CACTGGCCGATCTAAACGAGGTATTCCGGGAGCGTCGCGTCGCATCCTACGCGGATGCAAAGGCCTACTTTTTAATCACTACCAACTATGGCGTTTCAAGCAATCGGACGGGACAACGCCAAAAGGCATCTAATTTTATGGTATTTCCCCCTTAAGGTAGACAGGTTAAAAAAAGGGGAAACATTAAGCCAGCACCGACAGGAGAATATCTACCTAACCATTCAAGGGGTTCAGCAGGAAGAGTCATTCAGCATTCAGTTATTGTGTGAAATCGCAAAAATTCCAATTTTACAATTACGAGTGACTACAAACCAAATTAGTCTTAGTCCAATGGAGTCCAGGACCAAGTCCGTTTAACGTTTTTTTATTATTTATACTGTCTACTTGACAGGGGCTGTTCATTGGACAGCCCTTTTTCCAATAGTTCGAAGGAGTTCGTTACTCATTATAATACCTAAGTAGTATTGAAAAAGTTAGATATATGTAACAATAAAGGATAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1400050-1399230 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020557.1 Paenibacillus larvae subsp. pulvifaciens strain SAG 10367 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1400049 30 100.0 35 .............................. TCGCGTCTCATTTAAGCACATTTCGTTTATTGATG 1399984 30 100.0 36 .............................. CTACGTTTTTCCGGTATGTCTTGGGTCAGCCTGGCA 1399918 30 100.0 36 .............................. TTTTGCGTCACTCTCTGATAAATGTTTCCCGGTGTA 1399852 30 100.0 36 .............................. ATAAAAAAGCCATTGATTGGTGTCCTGTATAACGAG 1399786 30 100.0 36 .............................. ATAAAAAAGCCATTGATTGGTGTCCTGTATAACGAG 1399720 30 100.0 36 .............................. TAAAAGTAAATATGTTTCAAACCACGCTCCACCAAG 1399654 30 100.0 36 .............................. GTAAATTGCCTAAACATATCTGGTTTCCAAATCGCA 1399588 30 100.0 37 .............................. GGCTCGCCCTCTACAGCGTCGATAAGCTCGTCAAGCA 1399521 30 100.0 36 .............................. TGGAGATGAAAGCACTTTGTGAACAAAAAGAATTGG 1399455 30 100.0 36 .............................. CTGTATACGGAATCTTCAGGACCAGGTTGTTCCGGA 1399389 30 96.7 35 ................A............. TAATTACTGTATAAAGCACAACCCGAACGCAATTG 1399324 30 96.7 35 ................A............. TTGCAGAGGAGGATTGTGAAGAAGATGAATCAATG 1399259 30 93.3 0 ................A............T | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 99.0 36 GTTTGACAGTAACACATGGTGTATTGAAAC # Left flank : TTTATGCCATTTTTGGAGAAAGACCGGAGGTAGAAGGAATATGGCTAAAAATTATCATTACGTCATCCTTGTGTACGATATTGGTGAAAAACGGGTGGGCAAAGTATTCAAAATATGTAAGAGATACCTTGTTCACTTTCAGAAATCCGTATTTCGGGGCGAAATTACGCCCTCCAATTTACTGAAATTGAGAAACGATTTGAAGAAGGTTATAGATAAGGATAGCGACTTTATCGCTATTTTTAAAATGACGGGTGACTATGTATTTGATGAAGAAGTTATCGGTGTAAGATCGAACAATCAGGAGTCTTTACTCCTCTAATTTTCCCAACCTCTTTTGCACTATTACTTGGCTTCAGTCTTAGAACCATAAGGGACTTTCACTCATTTAGGTTCGTTTCCTTTTTAAATCCATTTCGGTTGGGAAAATTTTGCGAAACCCTTGGTACTATAGTAAAATATGCACATATGGCTTTTGGAAAAGCTTGATTTTATTAGGG # Right flank : TGTCGGCAGCAAGAGTTCTGTCGGTTTACGTTGAATGTTGGCAGTAACACAAGGCGGATAAACCCTTAAAGTTGGACACGCACTCACTTAATCTTGCGGTTTCATTAAATTTCATTTAGACTCGAACTACTTTGATCGGAATCGCTTCCACTTGGTTCTGACTGTAAAATATCTCAGGGACCATATCCCTAATACTGGAATGAATTCTGTGTTTGTTATATTCTAACGTTCCATTTCTTGAGTGCGTTGATGAAATAAAACGAGGTAAAAAGTGACTCGTACAAAGAGTTATCAATTTACCTCGTTTTTGGATTGCATATCTATAAGCTTATTCTTGCATTATAAAACCATTTCTCATCATACTTTGGTGTATGAATTCCCTATATTGGATAATAGCAATTATTATTCAGAATAATTCAATTGAGGATGCCTTTGTTCCATGTGAGTACGCCTTTGTTCCATATCCATATGAGGATGCCTTTGTTCCATGTGAGTACACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACAGTAACACATGGTGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 4 1425645-1425219 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020557.1 Paenibacillus larvae subsp. pulvifaciens strain SAG 10367 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1425644 30 100.0 36 .............................. CTTGTATTTACGTGTTATAATCGTTGTAAAATCGTT 1425578 30 100.0 36 .............................. ATACGAACCTGGGAGGGTTCATATACTTCCGCTACT 1425512 30 100.0 36 .............................. ATTATTATGTCCTCATATTCTTCCTCAAGGGAGTTG 1425446 30 100.0 36 .............................. CCACTAAAGTCATCGGTCGAGTTTCCCGTCTGCCAT 1425380 30 100.0 36 .............................. TGTACGATATCGCCCTCTGTCGTTAGTGCCATGTCG 1425314 30 100.0 36 .............................. TTCCTTCAATAGTTCACGAACGATGATAGAACTCCG 1425248 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 100.0 36 GTTTGATAGTAACACGAGGTGTATTGAAAC # Left flank : ATACTCTTTTACCCATCGATGTAGCATATTGGATGTTAGCTCGTAACGTCTTGCCACGGCTGCTTTGTTTCTGGTTTCCAGAGCTTCCGTTACAACCTGTACCTTCAACTCGTTGGAATATTTCGTCCGTCTCATTTATCATCCTACCCTATTACTTGTAGTATAAACAAAACACACTTTTATTGTCCAAGTTCATTAGGGGGCTTTAGAACTAGCTTCTAAACATGGTAAATGCTAAGAGATGTATAGATTTTTATTAATTCCTTTTAAGGACTCATTACATATATTCAAAAATAAGTAGAAGAATAAAAAGCTTTATCTCTAATTTTCCCAACCTCTTTTACAGTGGATTCGTCTTCAGCCTTAGAACCATAAGGATTTTTGCTCATTTAAGTTCATTTTATTTTAAGGTATATTTCGGTTGGGAAAATTTTGCGAAACCCCTGGTACTGTAGTAAAATGTGGACATACGGCTTTTGGAAAAGCTTGATTTTACTAGG # Right flank : TCTTTTCTCCTACATGGAGTACACAGCCCACATAGTGGACTTCTGTCAATAGATTGGACACCTAAAACCGAGAGAATTATGCAGCTAAACAGATCATATGTTCGCATTGATTGGGCGTAAGATACCCGATAGAGGAATGGATTCTTTTTCCATTGTAAAAGCACGTAATGTACTCAAAAATCTTCTCCTTGGCTTCTTTCCTGGTTTTGAATTTGTGCAGGTAAACGAGTTCTTTTTTCAGCACGCTGTGGAACGATTCAATACAGGCGTTATCGTAGCAATTGCCCTTACGGCTCATGCTGCCCGTCATGCCGTATTGTCGTAGCTGCGTTTGATAGTCCGAGGACGCATACTGGCTACCGCGAATGATGCAACACGGTTCCTTTCGGCCGTTGATGGCGATACGCCTGATCCAACGCCCTCAGGCAGAGCTCCCTGGTCATTCGCTCGCCCATGTGAAACCCGACGATCTTACGTGTGCACAGGTCTTCCAGACTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGATAGTAACACGAGGTGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 5 1475330-1475105 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020557.1 Paenibacillus larvae subsp. pulvifaciens strain SAG 10367 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1475329 30 100.0 34 .............................. GTTGTTCTAAATTTAAGTTCATAATTATCTCCTT 1475265 30 100.0 36 .............................. TCACGAGTGATAAAACGACTAGTAAAATTGACGCTT 1475199 30 93.3 35 ......C........A.............. AAGATGACCACGGTCGGTTAATCCCGTGCTTGGTG 1475134 30 83.3 0 ......C........AT.A..........T | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 94.2 35 GTTTGAAAGTAACACGAGGTGTATTGAAAC # Left flank : CTTCATAATAGTACGTACTTCTAGAGATTTGTAGGACGTCGCACATTGCTGATACCGAGTATTTGTCACGATTACGCTTCATGACATTTACTTTCGTCCCATGATCAGCGCTGCTTGCTTTAAAATATCGACTTCCATCTTAAGACGTTGATTTTCTTTTCGCAATGCAATAAGTTCATTCTCTTCTAGAGAACGGTTATCCTTCTCAGAGAAGGATCCTGACTGATTTGCTTGCTTGATCCAGCGATTCAATGCAGATGCACTCAGTTCATACTCATTTATAATGGCTGCTCTTGATTTTCCATTCTCGTGAAGTTGGACCATTTGTCTCTTGAAATCATCTGTGAATGTACGTCTTTGTCTTGGCATAGTAGATCCGCTCCCTATAATAATATGTTTATTCTACTAGCCCTTAATTTTTCTGTCCAACTTAGTGTAGCCCATCCACACGAGGTGTATTGAAACAAAGGGTATTCTCAAACCTGCCGCCCACTGAAGAA # Right flank : AATTGAGTCTAACACCAAACATGGTCATCCCATCCTGAAATTTTAGAAGGCTAACCTATTAAAAAAACGCCCTTATAGTTGCTTTATAGCAATATAAGAGCGTTTTTTATATATTCCGTTGTAAGAAATAGACTCTGGAAAGGTTTATTTTACTCAAAACTTCTGTGTTTTCATTTCTTTATACCACCATTCCATTGCTTGTCGTTCGATTTCTAGAACAAGATATTCCTTACCATGAAGCTCAACCAAAAATGTTCTAAGCACAACAAAGGGACGGACGCTTAACTTAAATATACAGCAAAAATTGCTCTGAATGTAGTTTGAAGTACAAAATTAAAAAGCATCAGAGCTGGGTTCAACCAACTACTGATGCTTTTTAATTTTATTCTCCTACTCCAACATCAACACAAACAATAATGGATGCTTCGCGAGTTTTATCTAGACTAATCCCACTTGCACCATATAACACTGAAAACATTAAGACAAGGCACGCGATGTGT # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:0, 3:3, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAAGTAACACGAGGTGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 6 4629816-4625836 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020557.1 Paenibacillus larvae subsp. pulvifaciens strain SAG 10367 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 4629815 32 100.0 34 ................................ GAGTTAACTGCACTTTGCCCGAGTGGATGAAGGC 4629749 32 100.0 35 ................................ TTCCAGAGCCTTTGCATAATCCTTCTCTGGGTAAA 4629682 32 100.0 36 ................................ TAACCCAAGTAGTTCACCGCGTCGCATTCCTGTTGT 4629614 32 100.0 38 ................................ ATCAAATCAAAAGTTTTGTGAAGATGACCGATTTCCTT 4629544 32 100.0 34 ................................ ATGATAATGAAGAGCATTTTAAACCTAATGGTGA 4629478 32 100.0 34 ................................ ACCTTGAACCCTTCTTGTTCAAGATAATATTTAT 4629412 32 100.0 35 ................................ TTCTTTTTGCCTATGCTTACAATGGCGATCCCGTG 4629345 32 100.0 34 ................................ TCATCAGTCACGGTTATAGTCACGGGTACGTTCA 4629279 32 100.0 33 ................................ CTGCTGTGATTAAGCTATCGGTCAACCCTTGTG 4629214 32 100.0 34 ................................ AATCTAAAGCTACATGAACTAGGAGTCCAATTTA 4629148 32 100.0 33 ................................ GAATTATGGGTCAAGAAAAAATGCGATCTCAAA 4629083 32 100.0 34 ................................ TAAAGAAAAATCAGAAGTAAAAAAAGAAGCAGAA 4629017 32 100.0 37 ................................ TCTGTGTAGGAGACAAAACTATTGATGTCCTGCTCTA 4628948 32 100.0 34 ................................ ATCTTGGGTGGCTCCCACAAACGAAAGCGCCCAA 4628882 32 100.0 36 ................................ AAAATGAAGTGAAAGTTTTAAAAGAGTGGTTGAAGG 4628814 32 100.0 37 ................................ ACAAGCTCCCGTTTTTGCTCAATCGGAAGGGATGGGT 4628745 32 100.0 34 ................................ CTGGTTTGTAGCTAAAGTGCTGTAAGGGAGGGGA 4628679 32 100.0 35 ................................ CTTTGAGGGGAAGGAATACACGGAGCTTGTACTTG 4628612 32 100.0 34 ................................ AGGGATGTATACGAATCTACCTCTCCCAAAAGAT 4628546 32 100.0 34 ................................ AAAGAAGCAATATGGTTTGGAATTTGGGGATGAT 4628480 32 100.0 36 ................................ GGTTCATTCATTCTTCTTCAGCTCCTTTCGTATAGT 4628412 32 100.0 34 ................................ CGCCAAATGTGTGTTTAACCCGTCCAGTTTTTCT 4628346 32 100.0 34 ................................ TAATCTTCCGGGGATCTTATCGCAACCTTCTTCC 4628280 32 100.0 34 ................................ ATAGAAAGTCTGACTGTGGAGGACGTTGCTAAAC 4628214 32 100.0 35 ................................ AAGACAGCAGAAGTGTTCGGAAAACTGGCGAACTT 4628147 32 100.0 35 ................................ ACGTGATTATCTTCGATGATCGGGAACTGGTTATA 4628080 32 100.0 35 ................................ GTATTTAAAATCGAAAAAGTGCGGCAGCCAGGAGT 4628013 32 100.0 33 ................................ CCCTGATCTATTTGTTCGCTGGCGCGGCTTTTG 4627948 32 100.0 35 ................................ AAAACCTGACTTTAGCAGGTTTAACAACATATCTA 4627881 32 100.0 33 ................................ TTCTGAACTGTACGGTGAGAAATACGCACTTAA 4627816 32 100.0 36 ................................ TCTTACTCCTTTCGTTTTACATAGCCTTTGTTGATC 4627748 32 100.0 34 ................................ TGAAATATAAGTCCGTTTATGTCCCCATAACGTT 4627682 32 100.0 33 ................................ CATATAGATGATTCCGCTATCAGTCAGTTGCAC 4627617 32 100.0 36 ................................ ATGAATCCAACCTCCATTATTCAAAATAAGATAATC 4627549 32 100.0 35 ................................ TCCCGTCGATAAAGAGACATACTTCCCGATGATGT 4627482 32 100.0 33 ................................ ACTTCTCGGACTGTCTGTGTTACGGCAGATAAT 4627417 32 100.0 35 ................................ CTCTGTGGTTACTCCGAAGTAAATAAGAATACCAA 4627350 32 100.0 37 ................................ ATCCGAAAGTTTTTGCTGTAACCCCGGCAAGATGGGC 4627281 32 100.0 36 ................................ GTATACACCCTTAATCCTTCCCGAGCTCGCGGGTCG 4627213 32 100.0 36 ................................ ATTTGCTAAGTTTTTGGCTATGTGAGACAATTTTTT 4627145 32 100.0 37 ................................ AGATACTAAGATATATTTATCCATCCGACCATTCTCC 4627076 32 100.0 33 ................................ GACCAAAATTCCCGCACCGCCGGATGACGCAAC 4627011 32 100.0 34 ................................ AACCCACGGTGCAGGTATGTTCCGAGATTTACAC 4626945 32 100.0 36 ................................ GTAACCTATATGTGTCATATAGAAGACCCACATAAA 4626877 32 100.0 34 ................................ CATCCCCTCCATATATATCCAAATGAACATATAC 4626811 32 100.0 36 ................................ TCCGAAAGAGTTTCAAGAGTTATGGCAATGTTTAAA 4626743 32 96.9 34 ...A............................ TCTCGGTAGTAAGCCGGCAGCATATCGATGAGTT 4626677 32 100.0 37 ................................ CAGATCGGCGCCGAAGAGACACACACAACCAACTCAA 4626608 32 100.0 36 ................................ CACTGACACCGAAAAACCGGATATGGGGCAATTCCT 4626540 32 100.0 37 ................................ CCTGGTTGCTCTACAGGCCTTTCACGTTTTTGGAATT 4626471 32 96.9 38 ..................A............. TGAACCAGTTTAGGAAATTTAGCTGTCACGTTGTTCCC 4626401 32 100.0 33 ................................ CCAGTTTTTTTGGAGGGATTGTATGAGTGAAAT 4626336 32 100.0 36 ................................ TGCCTATATCCATATCATTGTTACCACTTACACCAT 4626268 32 100.0 36 ................................ AACACTTCCGTGATTTTTTTGACAATGGCTTCTAGA 4626200 32 100.0 35 ................................ ATTAACTCTACTGGCTTTTCTGTCGGATGTACGGT 4626133 32 100.0 34 ................................ TGGCAAATGCTCTATGTATCTCTCCATCATTTCC 4626067 32 100.0 38 ................................ TGTACGAACTCATTCAGAATGTTGGATAGAAGGGAGGA 4625997 32 100.0 34 ................................ CTCTGTATTTAACCATCCAACCAAATACGTTGTT 4625931 32 84.4 31 ...A..........A...A..........T.G ACCCGATGCCAGAGTACACTGCCCTCCCTGA 4625868 32 78.1 0 ..TA...........A..AGT..A........ | C [4625840] ========== ====== ====== ====== ================================ ====================================== ================== 60 32 99.3 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : AGGGTACGAATGTTCATGCGGATTCAACGCTCATCGAGATCGGGTTGGAGCGATCAATACCATGAATCAACCTGTGGCAGATGGTAACAGTCTGTCAGCCTAAGATGCTATATGCACTGTCTTAGGACGGGCTGATGAGACAGCCCTGAACTTGGGGGAACTACGGTTAGCAGAAATGCATGACCGACTACCACCCAAGAATCCCAGTGATACCGAAGGTGTCAGCTTGCGGCTTTAGCCGTGGGAGTCTCAAGTTATCAATCGATATAAGGCTAACGGGTGTAAAAGAAGCAATTGATTTGGAAGGTTCATTCATTTTCTAGTGCGAATGTATAGTGCACATGAAAATCCCGGGAGATTCGCACCATTATTTCACCAAAAATATACAAATATCTGGATATAGGTATATTTGATTGTAATAAATTTGAATCAAAAAATCATTATTTGAATGATTTAATCAAAAAACCGTTCAATTTTGATTGTTTTGTTCAAATTTCGCT # Right flank : AAAAACTAGAGGATTTAACCACTACCAACTATGCCGTTTCAAGCGATCGGACGGAACGACGCGAAAAGGCATCCTATATTGTTTAGGATGCCTTTTTTTCTCACTTTACCGCATAAGATTCCGCAGCGGTAAAAAGATAATATGCCAGACCTGTCTGCCTTGACTCCATTATATTGCGATGAAAGTCATCATCCAGGAAAAACCGGGCTTGTAAAGCAAAATCTTCAGCGCTTGTGGCATGAACATTCTGATTCAGAAAATCAATATGTTCCCTGATCAAGCCCCTAACGGTTTCGTCGTCAAATTTCATTCCGGCTTTGAGAGCTTTGGCCATTTCCTCCATAAAACGATCCGCCCGGGAAGCCTTTTCGTTCATATCTTTAACATCTATTGGCCTGTCTTCAAGAATATCCAAACCATAAGTCTCTTTCAAATATTCTTTGTGCTCGGCTAAGGCATTTTTCCATTTTTGTTCGCTTTCAAACCCTTTGAACATGCTA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 4636466-4634433 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020557.1 Paenibacillus larvae subsp. pulvifaciens strain SAG 10367 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 4636465 32 100.0 33 ................................ AAGGCTCAGCACGTTTTGATGTACATGTATCTC 4636400 32 100.0 39 ................................ GCGAAATTCTCATATCGGGCAATGTACGATGGTGCTCCC 4636329 32 100.0 34 ................................ GCAGGACTGGTTAGCCTTATTAAGGGGGTGTCAG 4636263 32 100.0 38 ................................ TCCTGATTCTATGACAACGTCAAAATATTTCTTTGATT 4636193 32 100.0 35 ................................ CTGTTGAGGGAGCAAAAACAAGTTTTATAAATGCT 4636126 32 100.0 34 ................................ AACAAGATTACCCGAAGATTTATCCGGAATATGT 4636060 32 100.0 36 ................................ CGTTCAGGACCACTTTTCCTATTCGGTCCTGAGCAT 4635992 32 100.0 35 ................................ CAGTTCAGCGGACATTTTTATTTATGGGGATATCG 4635925 32 100.0 36 ................................ ACCAAAAGAACTCGAAGAAATAAACGAAATTGCCAA 4635857 32 100.0 33 ................................ GATAAAGGGCCAGCACGATCGGTATTCGCCGAT 4635792 32 100.0 36 ................................ AATTAAATCACCTCTCAACCAGTATACGCAAATAGT 4635724 32 100.0 33 ................................ TAAATCGCCTACTTCTTTTAGTGGAAGACGGAA 4635659 32 100.0 34 ................................ GTGTGGGTTAAATACATAACTTTAGGAGTTGAAA 4635593 32 100.0 33 ................................ TAGTATCCATCATGGCGCTTATCAGTCGCTCAG 4635528 32 100.0 34 ................................ CATCGTCAGCCCGCCGTGGTCAGGCATCGCTAGA 4635462 32 100.0 35 ................................ GACAAGGGCGGTCTTTTATATATTCTGGGGGATGA 4635395 32 100.0 35 ................................ TACCATTGCAAAACGTGGGCGTATGAGCCGTAGAA 4635328 32 100.0 34 ................................ TTCTTTCGTCAGTCTGTTGGGATTGCCCTCCGCA 4635262 32 100.0 35 ................................ TACCATTGCAAAACGTGGGCGTATGAGCCGTAGAA 4635195 32 100.0 34 ................................ TTCTTTCGTCAGTCTGTTGGGATTGCCCTCCGCA 4635129 32 100.0 37 ................................ AGTAGAATATGGGGAAAAGTGGCTCGATGACCTTGAC 4635060 32 100.0 34 ................................ AGCATCACTCAAGCCATCGCACGTATCATTCCCG 4634994 32 100.0 34 ................................ AACAAATTGTGGGGATGGAGGGTTAAAATCACTC 4634928 32 100.0 37 ................................ AACACAGAACCCACCGTCCTTTATCTCAGCACATCAA 4634859 32 100.0 35 ................................ TTGGAATTTTTGCACAATGGTACCGAGAAAACCTA 4634792 32 100.0 34 ................................ ATTTGATATTGATCCAAAACTCACAGATGCGGAA 4634726 32 100.0 30 ................................ GGTACGGTAGGCTCATACCCGGGCTTTATC 4634664 32 84.4 34 .GT.AG..G....................... AAATGTACGTGAGGTACGAGCAAACGTTTATTAT C [4634652] 4634597 32 100.0 36 ................................ CGGATGACCCTGTAAAGGAACCGTTTCATGATAATG 4634529 32 100.0 33 ................................ TGGTGAAGCTCTTGTAGGTGATCATCCTCGTTA 4634464 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 31 32 99.5 35 GTCGCATCCCATGTGGATGCGTGGATTGAAAT # Left flank : ATGGAAGTAGGTGACAAGGTTGCTGGTTTTAATAACTTACGATGTATGTACGACCAATAGTGATGGGCAAAGAAGGTTACGAATGGTTTCGAAAACATGCCAGAACTATGGCCAGCGGGTTCAGAACTCTGTCTTTGAGTGTAATGTAGATGCAGCTCAATTTGCCAGTCTAAAGATTCAACTTATAGATATTATTGATCCGGAAAAAGATAGCCTTCGCTTTTATCAATTAGGAAATAATTATAAGAACAAAGTTGAGCACATTGGTGTGAAAGAATCCATTGATTTGGAAGAACCATTAATTTTCTAGTGTGGATGTATGGTGCGAATGTGAAGTGCACATAAAATTCCTGAGGTATTCGCACCATGTTTTTACCATGTATATCCACTTTTTTGTCTATAGGCATTTTAAGATGCATTCAAACTGAGCAAAAAAATCATTTTTTTAAATGATATGATCAAAATAGGTTTGATTTTGAATGTTTCTCTCAATTTTCGCA # Right flank : AGCGAAGAACCAGATCAAGGCACTATGATGCTAGACTTTAAATTGGACACAGAGAACTGAGAGTGCGACAATAAAAACATTCATAATCGAGGTGTCCGACATGACGAAAAAGTATGACAAGGAATTCAAACTTCAATCCGTAAGACTTATCTGGATGGGCTACACTAAGTTGGACAGAAAAATTAAGGGCTAGTAGAATAAACATATTATTATAGGGAGCGGATCTACTATGCCAAGACAAAGACGTACATTCACAGATGATTTCAAGAGACAAATGGTCCAACTTCACGAGAATGGAAAATCAAGAGCAGCCATTATAAATGAGTATGAACTGAGTGCATCTGCATTGAATCGCTGGATCAAGCAAGCAAATCAGTCAGGATCCTTCTCTGAGAAGGATAACCGTTCTCTAGAAGAGAATGAACTTATTGCATTGCGAAAAGAAAATCAACGTCTTAAGATGGAAGTCGATATTTTAAAGCAAGCAGCGCTGATCATGG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCATGTGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //