Array 1 101087-101708 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRQ010000001.1 Nostoc calcicola FACHB-3891 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 101087 35 100.0 36 ................................... AATCGGTTGGATCGCACTAGTTAAGTCTACCAAACG 101158 35 100.0 40 ................................... GGTGCCGCTTTTATCGTTTATCCCTACGTAAATTTTTTTA 101233 35 100.0 43 ................................... ACTGTCATTCTGCACATTGCACCCTCCGAATGAATCTCGTTGG 101311 35 100.0 36 ................................... AAAAAGCGGTTATTTGGCACGTTTGTGCTTCAAATT 101382 35 100.0 42 ................................... TGAGAGACTAAATCCTCTTCGTGCAGTTGAATCTCGTGATCT 101459 35 100.0 36 ................................... AATAAGAGTGCAAATTGCTGATAGCAGACCTAAGAT 101530 35 100.0 40 ................................... GAAACCTCATCCAACCGGAGTAACCATTGATAAGGCTAGT 101605 35 100.0 34 ................................... CGATTGAGCTGTTCTTTAAGAGCTTTGATTTCTT 101674 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 9 35 100.0 38 CTTTAAGCTTCTTCGGAAGCTGAATTAATGGAAAC # Left flank : GAGAGCGCAATTAGTCGATTCTTTGGTATGTTATTTGGTGAATTACCAAATTTTTACCTTTGATGATTTCACACCACCAGATGAACGCGGTGGAGTTTATTTTCAATATCACGCCCTCAAGAAATTTCTTAAGCATTGGGAGGAAAAGCTACAGTCGGAATTAACCCATCCCCATACCGGACAAAAGGTAACTTTCCGCCGATGTCTAGAGTTACAAGTCAGAGAGTACATTTCTTGCTTGATGGGTGAAGTTCAACTATATCGACCAATGATTTGGAGAATGTAAAGTTTTGTAAATTTGAGGGGGTAGGGTAAGTCCCAGAACCCTTATTATTTCGTTACCCCCCTCAAAACTGGCTTTGTGTAAGGGTTTGAAGGTGCTAATTTGGTGAAATTTTCGGGCTTATTGACACTAAAATGCTTTTATTGACACTAATTCTTGACCCCCTCAAATTTATGGGTGTATAATCCTTGCATGGCAAGGCTTCTAAAAGCCAAGC # Right flank : CGAAGTTTTTTCGATATGAAGCTTACTTCATACAAGCTTTCTTTAAGCTTCTTCGGAAGTGGCGTGGCAAAACTAAAATGTTGCAAAAAAATTGTAGGTTGGGTTGAACGAAGTGAAACCCAACACGAAGGTCTACGTTGGGTAACGCGAAAGCTTAACACAACCTACATCTAATGGACTATTTTAGCTGTGTCACGCCACTACTTAAGAATTTTGATTGAATTTTACAGTGGCGATCGCCAATTTTTAATACTAACTTTTCTGCCTGAATAGTTACTTGGTGGTTAGCAGCATTTTTATTGTCCCATATTCAGTATAAGAACAACTAGAAACCCGCAGGAGTTGGGCATTTGGGATAAATTATACATCTAAATTATAGTAATCTTCGCTGTTCTGAAATCCAGGCGATCGCTGCCATAGGATTAGCCACCACAGTTATTTTCAATTAACAATCATTCATAAGAATGAAATTTTAATAGATAATTTCATCCCAAATTAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAGCTTCTTCGGAAGCTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 345485-344941 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRQ010000001.1 Nostoc calcicola FACHB-3891 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 345484 36 100.0 36 .................................... TTCATGATTACACAATTCAAACAGCATGTGTCCAGG 345412 36 100.0 37 .................................... GATAAAAGCCATGCCGACTTCATTTATGTTCGCAAAA 345339 36 100.0 34 .................................... GCTCTTTTGAGGCAAGTTCACCATCTCTTTGAAG 345269 36 100.0 34 .................................... GCTCTTTTGAGGCAAGTTCACCATCTCTTTGAAG 345199 36 97.2 37 ..........G......................... TTGTTGTCCTTCTGCAATGGGTATAGCAAACTGTCGG 345126 36 100.0 40 .................................... GTCATTATCCTTTCATCCAAAATTTCTAAACTATTGAACA 345050 36 97.2 38 ..........G......................... TTCTTGAGCTTTAGCGTTTGTCGGCAAAGCAGCATTTA 344976 36 86.1 0 ....C.....G...T.........C..T........ | ========== ====== ====== ====== ==================================== ======================================== ================== 8 36 97.6 37 CTTTACGATCACATCGCCCCGAAAGGGGATGGAAAC # Left flank : TTCAATTGCGATTGCGTAGTCTCATATCTTGCACTCTTGCACTGGAAGTCGCGGCTACACAGGCAAAACCCGCCTACGCGGCTTAAAAACCTTGATTTGCCGTTAGTCCGCCCAGGCGGACGAGAGTTTGTATAGCCGCGATTTCTAATCGCTAGGGCTAGGTGCAAGATGTGACTAGTGGCAGTATAGGTAAATTCTGGGCGTGGAAATGCGATCGCCCAAATTTTCTAGTATTTTGTAACAATTGTGTAATAGATTTGACAAAAAAGGCGAAAAAGTTTTAGTTTGGAAACAACGTATGTCGTTCATCGACACCACTCGCCCGAACCTTGAAAACCTAATAACTTCGTTGACTGGTGTCGATTGCTTACACAGCAAGGCTTTCAAGCTGTAAAATGCATCGGTTATTGACAATATTTTGGGAGTTATTGACACTAAAAAAAGTGGTGTCGATTAGGGGGTCTCAAACCCGCTCCTGGCAAGGCTTCCAAAAGTGAACT # Right flank : AATGCTGAAACTTTCGCAATGATTAGCGAAAATCTCTTAGTTTTAAATCTCTTTCCCCTCACGGGGATGGAAAATTTGATAGGGCAATACTTACTTAAATGAAGTTAGGCGATCGCAATTTTGCAACCATTGCCACTCATGCGATCGCTCTCCTAACTTAGTCTGAAAATGCGATCGCCCAAATTCCCTAGTTTTTTGTAACAAGCGTATTCCTCCCAATACTTGTCGGTTAAGGGGAAAAGGGGAAGGGGAAAGGGGAAAGAAAAAACCTTTAACCTTTACCCTTTAACCTTTTCCCCAAACCCAATTCCGAGTTAAAAATGCTTAACCGAGCAGTATTGGTATTCCTCCTACTCCCCGCACTCATTTTGCACGAGATTTGCTTGGGTGGAACGTAATTCTTCTAACGCCAATTCTAAACAGCGATTCTTCTCATCTAACTCCTGCGTCCGTTCGCGTACCTTCTTTTCTAGCACCTGGCTGTATACTTCTAGCTGTTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACGATCACATCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : CTTTACGATCGCATCGCCCCGAAAGGGGATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.60,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 440433-439673 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRQ010000001.1 Nostoc calcicola FACHB-3891 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 440432 37 100.0 34 ..................................... GTACTGGAAACCCCCTTAGCTTACAACGACGGAA 440361 37 100.0 38 ..................................... GTGCCAGATATCAGACGAACGGCTCAAGACGCTCTATC 440286 37 100.0 40 ..................................... ATGTATTGCAGCCATCCCATATTCAATAAAGCTTGGCGAA 440209 37 100.0 35 ..................................... ACCTTCGGCGATAGTGCTAGCAATGCTTGCCGGGT 440137 37 100.0 34 ..................................... CGAACTACTAACACTGAAAGATGACGACCTACTT 440066 37 100.0 35 ..................................... CGAGATTATGTCGGTAACACTCCAATAAATGGGGT 439994 37 100.0 33 ..................................... ATTTGGATATTAAGCTTCGGGAATTTAAGGAGA 439924 37 100.0 36 ..................................... TTTTTTGATTGATATGGGCGCGATCGCCCTCCTTCA 439851 37 100.0 35 ..................................... AGACTTTCCGCGCTACTATCTCGTAGGTATGAGAG 439779 37 100.0 33 ..................................... ATCATGTCACCCGCTTTTATCTCATCCTCAGAT 439709 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 99.8 35 ATTGCAATTAACTAAACTCCCTATTAGGGATTGAAAC # Left flank : GGTCTATACCAGAGCAGATAGCGATCGGTCAAGCTTGGGCTGCTTTCAGTCCTGAAGGTAAGTTATTAGATGATAAACTTTCACAAAGATTCGATCAATTTGCTCAGAGCTTAGTAGATAACACTCGCAAGCTACAGGATGTTAATTAGTTGAGGATCAAAAACTATTCTGAAAAATCGGCGCTGATTTTCTCAAACTCTGGTTAAAAATAGCTGAAACTATTTCTGTATAAGAATTATAACCATTTGCAGATTAAGAAGCGATCGCCTAAAATGCGCGGATAGGTAGGTGTTTATAAAAGGATGTCTACAAAAATGGCTCAATTGCTCTCTATGTAAGACTTTGACTACAGTAGCATCTTCAAATAATCCGCGCACCTTATTTGTCCTAGCTTTCAGGCATTTTGATCTAGCAAAATCACAACGACTTGTGTTATTATTTCCCCATCCGCGCAACCGAACCTTAAAAACCAAATATGATAAGCCTTCCAGATGCCATCC # Right flank : CGATTTAGAAAAATTAATGGAAAATTGCGATCGCTACCGGCGCTATCGCGCACCCTCCCCTTAATAAGGCTACGGTGTATACACAAGTGCTATCTGCAAAGGTTTCAAGCCTTCTAGATCCAATAAATTGTCATTACAAGTGCAGCGGTAGCGAAGTCCTCAATAAAGGGCACAGCAGTGCTGTGCCCCTACAAAAGATCTGGTTTTTGAATCATTCATGTTTGGTATTTCCTGTCAATGCCTAATACCATTTCACGAAAACCTTGATACAGATAGATTTCTCGTAGGGGCACGGCACTGCCGTGCCCTTACTAACTTGTGTGTACACCGTAGCCTTAATAAGGGGAGGGTTGGGGAGGGGTGTACCTCATGTACTTGCAAAACGCTGTATGTCACGAGTTGCGGCTTGTAGAAATCAACTAACAAGATCGGCGATCGCTCCTGAAGCAGAAACTACAGTTTCGGGTTGATAGCGGATGCCAGCTTGCTTGAAGCGATGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTAAACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 172827-173295 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRQ010000010.1 Nostoc calcicola FACHB-3891 contig10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 172827 36 80.6 35 ....T....G....G.....AT..CG.......... GAACGCACTGATTACTCGGCTGCGGTTGCTATGAA 172898 35 94.4 38 .......................C.-.......... AAAATTGCGGTCAATATGTCCGCGATTTCTGCTCAAAG G [172919] 172972 36 88.9 36 ....................T.A.CG.......... CTTTACCGAAAGCCCAGAAAATCTGAGTGGAGTTTT 173044 36 97.2 40 ......................A............. CATGGGACGAAATGGTTTACACGCTCACGGAGCAGGTAGA 173120 36 100.0 35 .................................... GCAGTATTATTTTTTGTTTCGGCTGAATCTTTAGA 173191 36 100.0 33 .................................... TTTGGGTGCGTCTTCGTGCCTTTAATCACACTA 173260 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 7 36 94.4 36 GTTTCCATTAATTCCGATTTCAGGGAATCGGTAAAG # Left flank : CAGAATTCAGAATAAATTAGAAAAAGTCGGGTGTGTTATGCCGTAGGCTAACGCACCGTCAACAATTCAATGTGCTTAGATCGGTAGACAACGCATTCTACATCTGAATACCACTTACTTAAGTAAAAGTTAGTGCCCAGATCCCCGACTTCTTCAAGAAGTCGGGGATCTAAATCCAGGTTAAGTAAGTGACATTCCATCCTATATCTACCTTAATTTATGCTGTTGTAATATCATTCACCTCATACACCCGTTCCTCGATCGCCACAATATACTTCGGACGAAGCTTAGGTGCAAGATCGTTAGCGATCGCACTAATCAATCGATGATGAATTCCTGCCCACAGAGAAGGATGTTCCAGATAAGGATTCATGCCAGGAAATGGAGAAGGCATAATTGAAAATCCCACGGCTGTTAAACTATCGCTTTTGCTCAGTTTAACAAAAAGCCGTGGGATTCTATTTACCGATAGTGACGTTCATTGTCTTCTCGGACACTGT # Right flank : GAGTTCGTTCAGGAGGCTTTGCCCCGTAAGGCTTTCAGCCGCCAAATCGACACACCTCTGAAAAAGACTATATATCTTGTGAAAAATTAAGTCAAACACACACCTCAAATCGTTACCCTGTAAGGCATCGACACACCTCAACGAAAAATATAGGGTTTCGGCGATTCGGCGAGGTGTGTCGATGAACATCTGATACAAAAATTTTACCGATATAGTTGGGTAAATTTTGGTATTTTTGGTAGGATTCTACCTAGCATCAATTTTATCAAAAAACCTCTCAAGCGCCTTTTCCATGAAAAGAAGACAAATTCTTGGCTTTTTGGGTATAGCAATTGCTGGTTTATTGCTAGCAATTATTTTACCACTAGTTACTCCTTCTCCCGTAGTCGCCCAGTCCAACAACATACTTGTGTCAGCCGCCGCTAGCTTAAAGGATGCGCTGGAAGAAATTAAGCCTGTGTACCAACAAAGTAAATCAAATGTGAATATTACTTATAATT # Questionable array : NO Score: 2.83 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCCGATTTCAGGGAATCGGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 186489-184302 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRQ010000002.1 Nostoc calcicola FACHB-3891 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 186488 37 100.0 34 ..................................... TCAATACCAATGGAAGGCAGACAAATCCCCCGTT 186417 37 100.0 34 ..................................... TAGCGATAAGGCAAGAGGCGATCGCGCCTCCACT 186346 37 100.0 35 ..................................... TCGCAAGTTGCTCTCCGCAACGGCGGGGCTGGCAA 186274 37 100.0 35 ..................................... AGGCAATTCAACTAGTAGCTCTGATAACTGCTACG 186202 37 100.0 33 ..................................... TTCCTCATCATCGGGGGGCGTTTCGCCTCCCGA 186132 37 100.0 38 ..................................... TTACGATGCCTGTAACAATAGTTTTAAACGTATTAATA 186057 37 100.0 34 ..................................... AATATCTTGGGGTGGTATATGATATGCTTGCATT 185986 37 100.0 38 ..................................... TCGATTGCCTCTAGCAATTCGATGGTTTGGACATCTTG 185911 37 100.0 33 ..................................... ATTTATTCGCCGGTTGAATTTGGGAACTTATCT 185841 37 100.0 34 ..................................... CCAACGCCAGCAATCGCAGCTACCCATCCAAACT 185770 37 100.0 37 ..................................... AATCAAATGCATCAATGAAGAACCGGGAAGAAAGTAA 185696 37 100.0 35 ..................................... ATGGCTCTGCTTCTCTCTGTCTATATGATTATGGT 185624 37 100.0 34 ..................................... AATTTACATGAATTCTAGAATGTGGCGTGCTTTG 185553 37 100.0 32 ..................................... ACCTGGGGAAAAACGACGGCAGCAACCAAAGC 185484 37 100.0 35 ..................................... TTACGTCAAACGCTTACTGGATGCCCAAAGCAGGC 185412 37 100.0 32 ..................................... CGTTTTCGGTATAGAAGCCACTTAAAAATAAA 185343 37 100.0 37 ..................................... GTTAGCCTTTACAGGAGGGCAATTTAATAATGCCACG 185269 37 100.0 37 ..................................... TCGTGAAGAACCATAGAAGTTTGAGAACGAATTGAAG 185195 37 100.0 34 ..................................... AACTTCTGGCTGATGCAAGGTTTGAGCCGTATCT 185124 37 100.0 34 ..................................... AACTTTGGTAGCAATATCAGAAGCTTTCTTTGTG 185053 37 100.0 34 ..................................... AGCGAGCCTTTTTAGACCGGACTTGAAGTTAGTA 184982 37 100.0 35 ..................................... TCCGACATTGGGGGAGAGATAGGGCAGTTGCTCGA 184910 37 100.0 34 ..................................... AATACAGAACTACAAGTAAGAAGTAGAAGTGGTT 184839 37 100.0 32 ..................................... AATACTCAAAGCCTCTTCAAGATAAGCTTTTT 184770 37 100.0 36 ..................................... ACAACGTTTTGTTGTTCGTAGACATATTCAATATAA 184697 37 100.0 36 ..................................... GTATCAATGTCCCTATACATCGATACAAGATAAGAG 184624 37 100.0 33 ..................................... CTTTCTTTCTCTTCTTTTCTTTTTCCTTTTGTT 184554 37 100.0 35 ..................................... AACGATCCAGCCAATTTTACTTTATATGCAAATTG 184482 37 100.0 35 ..................................... ATCGGAAGTACCAAGCCACCTTCAGCTAGCGATGG 184410 37 100.0 35 ..................................... ACATTAGCTTATTGGGACTTACAAAACTAAAATAT 184338 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ====================================== ================== 31 37 99.9 35 CTTGAAATTTCATCTACTCCCTATTAGGGATTGAAAC # Left flank : AATGAATGTCCTTGTATCCTACGATATTTCCGAAGACAAACGCCGTACCAAAATTCATAATATTCTCAAATCTTATGGACAGTGGGTGCAGTATAGCGTGTTTGAATGCCAACTCAGTGAGACTCAATATGCAAAACTGCGATCGCGTTTGTACAAACTGATTAAACCTGATACTGATAATATTCGCTTTTATTTTCTCTGTGCCTGCTGTTTTGGTAAAGTAGAACGTATTGGTGGCGAACCAGTGCGCGACGATTCTATTTTCTTTGCCGAATGCGCGGATGGGTAGGTGTTCAAAACAAGGTTTACCCAAAGAAGCTTCAAAGTAAGCTGTAGCAAGAGTTTTGAGAGAAATAGTTGGAAAAGTACCCGCGCACCTTACACAGACTGGGTTTTGGCTATTTCCTTAATACCTAATCTCAATTTTCCATGTTACCATTAGACCATCCGCGCAATAGAACCTTGAAAACTAAATACAGACCGTGTTTCAGGCTACCGCA # Right flank : TTTCTAGATGTTTTTAATTTGTTAACAGACTTCAAGATAGTTTGAGATTTTAACACTGAAGCTGCATATTCTGCTATGACTTTATGACCCGCGGTTGTAGGATGAATGCTGTCCCAGAACAAAAAATTATTTGTATTATTCTTACAATCCAATGATGGATGAGAAGCAGGTATGGTTATTAAAACTGAGTTTCCTAAGCAAGAGTCGATCGCGTTTGTAAAACCATATTGTCCAGGATTAGCTAAAAGCTGTTTAAATAACAAATTAACATCTAAAAAAATGATATTTACATGATTTATTTCTTGACTTAAAGAATTGAGACTTTTAATTAACTCGACATTATATTCAGCGACCCAATCGTTGAGTAGTTTGGAGGTTGGACTATTTCTTGTACCTGGTAAGTTACCCAAATTGAATAAATTAGCCACTAGGATATTTTTAGCTCCAACAGTGGCAAGAGAACGCACTGCTATTGATATGTTTGTAACTGATTCACTGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATTTCATCTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 2 200402-199271 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRQ010000002.1 Nostoc calcicola FACHB-3891 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 200401 37 100.0 34 ..................................... GCTTATTGTAACTATTAATTATTAGTTAATGGCA 200330 37 100.0 35 ..................................... AGTTGGCTGTAGGGTACGGTCACAGAACAAGGAGA 200258 37 100.0 36 ..................................... GGTTTGATGCGCCAAACAAATTCAGACCCAATGCTT 200185 37 100.0 37 ..................................... GAGCAAATTTACAACGGGCATCAACATCCCAAAGATC 200111 37 100.0 37 ..................................... GTTTGAGAGTCCCCTTTGGTTGGAGGCGACATACAAA 200037 37 100.0 34 ..................................... GTAGCCGTGGCGGGTACTGCTAACTAGAGCTGCG 199966 37 100.0 40 ..................................... CAGATTCCAATTACCAAGCGGTTTTATGTGAAACGCTAAA 199889 37 100.0 35 ..................................... CCATTCTCGGCAACAAAACTTGTCGATATTTCCAA 199817 37 100.0 34 ..................................... TAGCTCATCAAATCCATCTATGATCGCTCTAATC 199746 37 100.0 36 ..................................... TCGCGTTAATCGACCCCGAAATTAAAACGCTGGTGG 199673 37 100.0 35 ..................................... TTATGTTAAAGCAGCAAATGAGCTAGAAGCTTTGG 199601 37 100.0 36 ..................................... AAAAATCTTAATTTCAAAGTCCGAGAAACTTAATTT 199528 37 100.0 37 ..................................... GAATGTATGGCTGATTATTTCTTTTCATCTGGAATGG 199454 37 100.0 37 ..................................... GAATGTATGGCTGATTATTTCTTTTCATCTGGAATGG 199380 37 100.0 36 ..................................... GCATTATTAGTTATTCAAAGATTGGATACCCCAGCG 199307 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ======================================== ================== 16 37 99.8 36 CTTGAAATTTCATCTACTCCCTATTAGGGATTGAAAC # Left flank : TGATCCCAACGATCTTAAAGTTGTGTCTGCATAATTTGACATTTTAGTAAAGCTCCTACTGACGTAAAAAACCCCACCCCTGAGAGAGGGTAGGGTTAGTTATATTACTAAGGCTATTTAATTTGATATGATATCACTCAAATTAGAGAAGCGATCGCCCGAATAGAATAATCAACCCAACAGAATCAAGTTTTAATCGAAATTCTTTTGACTTTTGACTTTTGACTTCCGCGTAGCGGTAATAGTACCCGGCGATTCTATTTTGTTTGCCGAATGCGCGGATGGGTAGGTGTTCAAAACAAGATTCCGGGAAACAAGCTTCAAAGTATTGTGTAGCAATAGTTTTGGGATAAATACTTACGAAAGTACCCGCGCACCTTACACAGACTGGGTTTTGGCTATTTTCTCAATACCTAATCTCAATTTGCCGTGTTATGATTAGACCATCCGCGCTACCGAACCTTGAAAAGCTAATACACACTGTGTTTGAGGCTACCGCA # Right flank : AAAAAGTGTATTTTCAGGCGGCCGATTTCTTGATAAAATTGGAATTTGGTCTACTCAACGAGGTAAAAAATGCAAAAAGATTCATTATTTACTAATCGTGTAGCGGTAGTGGCAACGATGCACCAAAAAGAAAAGGCGATCGCTCCAATTTTAGAAGCAGAGTTAGGAGTTAAAATTCTCGTACCTCAGGATTTTAACACTGATGTTTTCGGCACATTTACTAGAGACATTAAACGTCCAGGTAATCAAATTGAAGCTGCAAAATTAAAAGCGAAAAAAGCATTAGAATTGACAGGTGAAACATTAGCAATAGCTAGCGAAGGTAGTTTTGTTCCTCACCCTGACATACCTTTTATTTATAGTAATAGAGAAATTGTAATTATTTTAGACAAAAAATCTAATTTAGAAATTATTGGGCAAGAATTTTCCCTAGAAACGAATTATAACCATATTGTTGTAGAAAGCGTAGAACAGGCATTTGAGTTTGCCAAGAAAATAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATTTCATCTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 3 339956-341376 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRQ010000002.1 Nostoc calcicola FACHB-3891 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 339956 37 100.0 41 ..................................... GATTGTGACATCGCTGGCGTTTGTAATTGCGATCGCGCTTC 340034 37 100.0 35 ..................................... GATTTGACGTAAACTGGCCCGTACAACCGATTGAA 340106 37 100.0 35 ..................................... AGGTCGCTCAGCTTCTCTGGTATTTTCGATGTGGC 340178 37 100.0 37 ..................................... GCCCATACCATCGCTTGAGGATTTTAGGCGTTGTGCG 340252 37 100.0 37 ..................................... CGAACTCGGGCAGCAAGAACTAGACAGAATTTATGGA 340326 37 100.0 34 ..................................... AATTAATTAAGAAATTGCCCAAAAAGCCTCGCAA 340397 37 100.0 35 ..................................... GACTAGTTTGATGGTTGGTAATGTCAACGCCATCT 340469 37 100.0 34 ..................................... CATTCTTTATTCTTAATTCCCAGATTGATTTTTA 340540 37 100.0 36 ..................................... TGACTACTCGAAGTGACAAAACTTAATTTTTGTAAC 340613 37 100.0 38 ..................................... AGTCGATCGCTCCCTACGATGAACACCAGTCGGATTTG 340688 37 100.0 36 ..................................... AGGGAAGCCAGAATCCTGCGACCATTAATTTAGAAA 340761 37 100.0 38 ..................................... TATTCAGAGCTAGGAATCTTAGATTTCTTGAGTGTGAG 340836 37 100.0 34 ..................................... TAATTCAATAAATCGGATCTGATGCTTAATTGTA 340907 37 100.0 34 ..................................... AAAATTAGGCTAGTTCCTTCTAGGGTAAAAACTA 340978 37 100.0 37 ..................................... GCAATTGGGATTCCCTCTTTATTGGTAGTAATTTTGG 341052 37 100.0 34 ..................................... CTAGCAATTTTGTAGTCAATTTTGACATTAACCA 341123 37 100.0 35 ..................................... AGTCTGAGTAAGCATAGAAATCACAGGCAACAACA 341195 37 100.0 35 ..................................... AGACCATTCAGATTTAATCCCAAAGCTGATAAAGA 341267 37 100.0 36 ..................................... ATTTTTAGCCTTGAAATGACCAAAGAAGAATGGGGA 341340 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 20 37 100.0 36 GTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Left flank : CATAAATATTTTTTTCTCACGCAGAGGCGCAGAGGCAAGGCAGCGCGGTCTTGGGAGTTTCCCCCATGAGCGACTGCCGCGCTAAGAACAGAAGGCGGAGAAAGACTTTTGCAAGAGGTCTACTCAATAGGCAAAGTTGCGATCGCCCTTGAACAAGTTAATCAAGCCTGAAACCGAGAGTATCCTCTTTTACTTTATATGTGCCTGTTGTCTAAGTAAAGTTGAACGTATTGGTGGGGAAAAGATTCGTGATGACAGTATTTTTTTTGCTGGATGCGCGGATGGGTAGGTGTTCAAAACGAAATTGTAGGAAGTAACCTTCAAATTCGCCTGGTGCAAGAGTTTTGGGGAAAATAGCTAAGAAAGTACCCGCGCACCTTACACAGACTACGTTCTAGCTATTTTCCTAAAACCCAATGTCAATTTCACATGCTATCATTACTGCATCCGCGCTACCGAACCTTGAAAACCCAATACAAACTGTGTTTCAGGCTACCGCA # Right flank : CCCATATGCCCTTGCGGCGACCTGGGCGGCGTTCGGGGTTGAAATTTAGTATATTAAAACACTGAGATTCATGATATCGAATTTGAATTAGACGCGATAAATCGCCGTCTCTACAATAATCAATTTTTTCTAGAGACGGCGATTTATCGCGTCTCTTGCCTTAACCGGATTGTGAAATTACATAAAAATCATCACATTCAATAGTGAAACACCAATATCCAGCATCCAAAATCCGAAGCTAAGTATGGTGTTAGGAACTTTTTTTAAGGCTTTACCTGCTTGAATATCCAACACTTGTGTTAATTCAGTTGTATTCAATGACTTAACGAGACTCAAACCAAGAGACTGACTAGAAATGCTTTGAGTGTGGGTGGCGTTGAGATAACGAATATATTGTGGCTTTCCTGCAACATAAGTTTGGAAGAAAGGCAAACTTAAAACATTCATGTAACTACGCGCTTGGGAAGCATCGCCAATCATTTCAGCAGGTAATGATACTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 88769-88230 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRQ010000024.1 Nostoc calcicola FACHB-3891 contig24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 88768 37 100.0 35 ..................................... AAGCCAAACAGCGCTTAGCGGAATTAATTATTGAA 88696 37 100.0 39 ..................................... GTTGTCTAACATAGATAGTGAATAGATACATTATAAAAG 88620 37 100.0 33 ..................................... CAACTGCTAATTTAAGGTACTCATTTAAGCTTT 88550 37 100.0 32 ..................................... TTTCCTCGGCTGGCGATTCCTTTACATAAGGT 88481 37 100.0 34 ..................................... GTGTAGCCCACAATCTCTGATAGCCAATCTCTGA 88410 37 100.0 35 ..................................... TTTTAAAGCTCGGTTTAAATCCACTATATCTTCAA 88338 37 100.0 35 ..................................... CTTGAATTACTAAATTGGTGGCGGTGGTGTTGCGT 88266 37 97.3 0 ..........................A.......... | ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 99.7 35 ATTGCAATTAACTAAACTCCCTATTAGGGATTGAAAC # Left flank : CAGGAGCAGTACCTTGGACAGCAACTCAGGCACTCAATAACAGTACATTACCTTATGTTGTCCAATTGGCGAATTTGGGAATTAAGGCATTGGAAATTAACCCAGCCTTAGCTAAAGGTGTGAATGTGCAGAATCATAAATTAGTGCATCCTGCCGTGCAAGAAGTGTTCCCTGATTTGGTAAGTTAGAGGTTATACAGGTGAGGATTAGAAACTGCGATCGCTTAAATTAATGGTGGTAGCCCTCAGCAATTAGACTAATTTCCTTGCCAAATGCGCGGATGGGTAGCTGTAGAAAATCAAAACAAGCAAAAAATGGCTGCATCTCAATGTGTACAAGGTTTTGAGGACTATAGAACTTTTAAACCATCCGCGCACCTTACGGAGACTGGGTTTCAGCGATTTGCATCTGGTGTTAACACCATTTCCTGTGTTATGATTCTTTCATCCGCGCAACTGCACCTTGAAAACCGAATACAGCAAGCCTTTCAGATGCCAGCG # Right flank : GATAAGTAATTCCATTGCTGAAATTTTTGTCAAAAATTGCCCCACATTGCAATTAACTAAAATTCAAAAACCATTATTTGCATTTTTGCGGCTATACTCGATATCGTACAGTGACTTTGACCTCTTGTCTTTTGACATGTATCACTAATTCATGCACAATTTAAAAAATTCCCTATCTATAGAGAGATGTTTTTTAAATTCAAGAAAGATTACTGAAAAAATACACAAAAATACTTGCGATCGCCAACTATGAAAATCAAGCTTTTGAAAATAGCGTAGGCGTTCGCGTAGCGTCTCGTAGAGAAGGCCGTCGCAGACATCGCCATTACAACAATGCAAAAATAAAACTCAAAGATACCTACACTGCAAGCTTTTTAAGCATCCCAAATGGTAGATTTATTTGCACTGTGGTGTAAAAATATATTTTTGATGAATTGTCAATAATCAATATTCAATACTTAACAATTAAAATTGGATGGCTTGATAATTTCCATGTCAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTAAACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 65935-66261 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRQ010000026.1 Nostoc calcicola FACHB-3891 contig26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 65935 35 100.0 40 ................................... TTAAAAAACAAAGAATTACTACTTGAGTTGCTTCTGAAAT 66010 35 100.0 36 ................................... TTTCTAAATCGTAACTAAAGGATTTGATTTCACATT 66081 35 100.0 40 ................................... GTTGCCGGAATTAAAGCACCTAGGTAAATTAGCACACTCG 66156 35 100.0 36 ................................... GAGAAGAGAGTAAGTTCAAGCTGTATGGCCATAATT 66227 35 97.1 0 ..................................T | ========== ====== ====== ====== =================================== ======================================== ================== 5 35 99.4 38 CTTTTAGCTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : GATAATATTTTGAAACGCAGAGGGGCGCAAAGTAAAGCGCAAAGGTACGCAGAGATTAGTACCTCAGCAGACTAGGAAACGCTATAAGAAAGCCTATCCCAATAAAAAAGTTGAAGGTTTATTCAACGGCAAGCCACTCTAATCAATTAGAATTGATGCGATAATCAATAGAATTAGCCCTCGCAAAACTGCTAGGGCTGTTTGAATGTTGTGAAAAATTGCCAAGCCAAAGAAAGTAGTGATTTTTAAGATGGATGTATCGTCCTTTGACTCGGAAAAAATAGTTCGGATAATGTAAAGAAATGTAAATTTGCGGGGGGTAGGCAATGGCTGAAACCCTTATTCTATCGTTGACCCCCGCAAATCCTCTCTGGGTAAGGGTTTGAGGGTTTTTATCTGGTGTTTATTGCGAGTAATTCCTATTTATTGGAGCAATATCTTGACCCCCGCAAAAATGAGGGTGTACAATCCAGTGATGGTAAGCCTTCTATAAGGCTACC # Right flank : TGTAAAAATATTTCTAAAACAAGATACCCAACTTTTTTTAAGTCGGGTATCTTTTTTCAGGAATATAGGACAATACGTTTATTTAAGGTTTATTGGTAAAAAACTGGTTTTTTAGACGCGATGAATCGCGTCTCTACATGAATAATTTTATGCTTAACTGAATTGTATTAGTATATAGGACTTATGCATTAAGCAGATATCATATTATTTTGCAATACAACAGGGTACGATCGCATCTGTACCAGACTGAACTAAATCAACTTGTTTGAGTAGCTCGATCCAAGCCGATGCAATTTTTGGATCTTTGTCTTTGGTATTTTGTAAATTTTCTCCTAAAGTTGTTAAAGCATCATACCAAAGACCATGTTTTGCAAAAAAACTAGCTTTTTCCAATGGGGTTTTAGCGGCTGCAAGTTCTTGTGATGATGCATTGAGAGTCACTTGTGTCATTGAACCTTGGACGTAAACAGCAGCAGATGGTTTGTCAGGATCGCAATAAA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAGCTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 18856-19322 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRQ010000027.1 Nostoc calcicola FACHB-3891 contig27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================================================================================================================================================== ================== 18856 36 100.0 40 .................................... GAAATCAACGGCGCTGATGGGGTTGTCTTGATGCAGTTGA 18932 36 100.0 35 .................................... ACTCTTGTGTGTCCGTCGCATTCTGTTGGAGAGTT 19003 36 100.0 35 .................................... GTTGGAGTGCCGACAATTGACTTTAATCAAATGCA 19074 36 100.0 171 .................................... GTAAGAAATTCCCGCTGTTGCTTCGCTATTGGCTAGGGTTCTTTAACATTAGACTTGTTGGGAAATAATATGAATAATCGCTGGAATGCTTACGCTATCTAGGTTACAGATATTTCTAGACAAAATTGCTGAAATCTTTGCCATGTCTGGGTTCTAGATATTGTCCAGCTT 19281 36 91.7 0 .....AC............................A | T,CA,TCT [19282,19287,19294] ========== ====== ====== ====== ==================================== =========================================================================================================================================================================== ================== 5 36 98.3 70 GTTCTTTAACATTAGATGTCGTAAGACGTTGAGCAG # Left flank : TGTTTAGGTGAAAGTCGGGATCTAGTTAATAGTGTTACTCTTTTACCTGAGAATTATCATGCTGAGTTACTGTGGTGGTTAGTTACAGATGAAGATGGTTGGCTAACTCTACCCTACTGGGTTGACCATGTTGGGTCTAGGAGAACACGCTGGCAGTGTTATGAGCTTCAAGAGTCCCAGGTATGGCAACCACCGGATTTATCGTGGACTACAATTCAAACTAGTTAAAAAAAGAGGATATTTAGATTTTGGCAAGGATATCTGCTTGTTGCGCCAGCACAAAGAGATAAAAAATCGCTATTCTTTACTGAATCAGCAATCTAGCACTTTCCTAATGATTTAGGATGCTTGCAATTCCTCATAAAGTTCCAAGAATAAGCCTTCTGAGCGTTGTTAAGTTAACCTAGCCCATTAAATTTTGCAAATTTAGTGCGTCCTAATGACAGGTGCTTATAAGATTATCTACAAGACCTGATGGATTAAGGTGTTTAGCCATCACC # Right flank : AAATTGTGGTACTCTTTGTCATAGGTTATAGTTCACCCTTTTAACTGGAAATAACTGGAAATTTTTGCACGGATTTTTTCCCATTGCTCAATCTGCTTCTGTAATTGCAATTTGCGATCGCCCTCAACTGTGCCAAGACCAGTAAACAAACCCTGACCATTCAAACGATCGCGGTAAATAGCAATCAATTCAGTCAGTGCTTTTTGATCTCTTCCATTTCCTCCTCTGTGAAGGAATTGATATCTAGCCCAATCAGTCGTCTGCCAATTCTCTCCACAAGCTCTGACCTGCTGACATCAAAATTGGAGGCGATCGCATCTAATCCTTCAATACCAGTGGGAGTAAGGGCTAGGTTGACCCTTTTCTTAACCTCGTCGTACATCTCTGGTACATCTTTTTGTCCTTTCTGCCCTTTTTTTCCCATTAGTACTGAGCTATTACACACTTCCTAAATCATAGTCAACAGCAAAGAATACGGCTAGATTCTATAAATTGCTCAA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTAACATTAGATGTCGTAAGACGTTGAGCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 194038-196166 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRQ010000003.1 Nostoc calcicola FACHB-3891 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 194038 37 100.0 44 ..................................... TGCATGTACTTCTTCCATGTATTTGATCAGGAAACCTGTTGATA 194119 37 100.0 34 ..................................... TGAGACTTACATTCAAAGCCACATATCACTTATT 194190 37 100.0 34 ..................................... CCGTACCCATCACCTATAGAACTCGCACCCTTGG 194261 37 100.0 35 ..................................... GAATCCGAGTGCGATCGTCGGCTCTTGCCTTGGTC 194333 37 100.0 37 ..................................... GAATCAATGGCATCTTGCTAGCAGTGATTTGGCTAGA 194407 37 100.0 34 ..................................... AGAGAGTTAATGCGATTACCACCACTGCCGGACC 194478 37 100.0 39 ..................................... GAAAAACCACCCAGAAACTTTAGTGCCAATTTTCGAGTT 194554 37 100.0 35 ..................................... GGCAGCCCCAGAATTCCAGCAATTAAAGCCACGCA 194626 37 100.0 35 ..................................... GTTTTGATTGCTGGGATTTTGGGATTGCCGACTGA 194698 37 100.0 34 ..................................... AAAAAAATTACAGATATTTACGAGTCTGAAGAGG 194769 37 100.0 35 ..................................... CACAGAGGAAGTGCATCCCAGGAAATCGGTGCATT 194841 37 100.0 33 ..................................... GCCAAATCCTCGCCATCAAAAGCAAGGATTCCA 194911 37 100.0 35 ..................................... CAGACGATGCAGTTAGACCGTTTCTCAAACTATCT 194983 37 100.0 35 ..................................... TACTAATCTTAATAATTAAATCTTGAACACCAAGT 195055 37 100.0 34 ..................................... GGCTATGAATGCTCAATGGAATGGACTTGGCCTA 195126 37 100.0 34 ..................................... ATGTGGTGAACTTCTTCAAGGTGTTACGCGTTAG 195197 37 100.0 34 ..................................... TTTGCTGCTTCGTCCGAATAACTGTATTCAACAA 195268 37 100.0 35 ..................................... TTTTTGGAACCAGATTTATTAATAGAATCAACTGC 195340 37 100.0 36 ..................................... TTTTAAAAAGTCTTTCAGGTCATCCACCATTTGAAT 195413 37 100.0 33 ..................................... TTTGTTGACCGCCGCTTTGAGGCGATCTCTTTT 195483 37 100.0 33 ..................................... ATGTCCTACCAAGAGTAGAAATTCTCGGTGCAA 195553 37 100.0 35 ..................................... TACTGGAAAAGTTCAAGACACTGGGGAACAGTTAC 195625 37 100.0 38 ..................................... ACATCAGCAGCCTAGAACCAAAAAATCAAGGTGGCGCG 195700 37 100.0 37 ..................................... ACGTATTATTCAATTGGTATGTCGATGATGTTTTTGG 195774 37 100.0 34 ..................................... TTAACAAGTAACTATAACCCAAGACAAACGGGAA 195845 37 100.0 34 ..................................... CGATTCCATTGGGTAGTTGCAATAGCAAATTTAG 195916 37 100.0 32 ..................................... GCTGATGCTTTCGCTGCTGCTAAAGAAAGAAA 195985 37 100.0 35 ..................................... CCGCAGTACTTCTAGCATCCTTGCCAATAGCTTCT 196057 37 100.0 36 ..................................... GATAATCATATTCTTGTTGTCTAGGCTTATGTACAG 196130 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 30 37 100.0 35 ATTGCAATTCCACCTAATCCCTATTAGGGATTGAAAC # Left flank : TGCTGTTTTGATGAAGAAGGGGAAAGGGTAAGGGGGAAAGGGGAAAGGGAACCCCATATTTAAAAATAGGGGTTTCAAGCATAGACGCTGATTTAGAGTCGCACTACGTGTCCTCCTAAATCTTCTTTTAATATTCTCCGCAATTAAGATAGGGGCTTTATACCATGTGGGGAAAAGTTTTACTCTTTTTTTCCTTTACCCCTTCCCCTTTCCCCTTTTCCCCTTTTTGGTAACGTTGAACAACCCGCGACAAAACCATTTTTTTTGTTGAAAAGCGCGGATGGGTAGGTGTAGAAAATTAGGCTTGAGGAACAATGGCTGTGTTCCTTACAGCACAAGGATTTGCCGAAAAAATAAATTCAAACCATCCGCGCACTTTGTCACATAAGGGTTTCAGCCATTGACTGTAAATCAATTTACATTTTATCGTGTTATACTCAGACCATCCGCGCCACCGAACCTTGAAAACCTTATATTCACTGGACTTTCCGGCTCCCGCT # Right flank : CATATTTTCGGTTTGGATAGCGATTAGTTCTCGAACATCGTCCATAACAACTGGATTAATCTACTGATTTTCACCACTTGGGCGATCGCTTTAGAGGTGTGTCAATACGGTTCGGTTAAAGGGGAAAGGGGAAAGGGGAAAGGTTTCAAATACATCCTTTACCCCTTACCCCAAAACCATTTCCCAGACCACAAGGGAAGTTCATACTGCTTATCCGAACCGTATTGAGAGGTGTGTAACTTTGACTCGCTCGTATTTTATAGTTAATTTCTGCCCCGTTCTTGCATTTCTTGCTGACGCATGGGCATAGCGTCAATTTGCTCAAAAATTGCTGTTGCTTGGACTGGTGTAGTGTCTTGGCGCTTAACACCACCATCTTTACCTATCAAAATAACGCGAAAATTTTCTTTATCAACCCCAAACCGATTTCGCAAATTAGCAGCAGAAGATTCATCTATTGGCTGTCTGTTGGCATAGCTTTTATCTGTTGCCAAAACCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCCACCTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 2 350169-350587 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRQ010000003.1 Nostoc calcicola FACHB-3891 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 350169 36 100.0 37 .................................... CTCGAACGGTAAAGATAAACTTGGATGGTAAGCATTA 350242 36 100.0 42 .................................... AGCATCACACAGTCGTTTTCGTTGGGTTCGATTTTATGCATT 350320 36 100.0 44 .................................... TACATGACATTTTTAGCTAATCGAAGACTACGAAAAGACATAGC 350400 36 100.0 42 .................................... TTGATTCTATTTACTTCCTTGTTACGCCAACAAATACAACGT 350478 36 100.0 38 .................................... TAATTTTCCAGCCCTTACTTATATGATTCGCAAAAATT 350552 36 91.7 0 ..............T......A.............T | ========== ====== ====== ====== ==================================== ============================================ ================== 6 36 98.6 41 GCCGCTTCTCTTCTGAGAAGTGGAATTAATGGAAAC # Left flank : TCGAGAAATTGACATTGCCTTAAAAAAAGCTGGTTTTACCAGCGTCAATTATGAGCATTTTGAAATCGGATTGCCGATTGTCAGTCCTCATATTATTGGCGTAGCAACAAAATGAATACGTTTTATCCAAGAAGGGAACAGGGAATAGGGAACAGGGAATAGTTTTTCCTAAGGGACTTCCAAGGAAAAAAATATTCCATAGTAGGGGCGCACAGCTGTGCTACCCGAAAAATGTACAAAGAATTTGGGATAATTTATTCTCTGGAAGTCCCTAAGTGTTTTTATGAAAATAGCGAAATTATCAAGTTTTTTGTTTTTCTGCGGCGGGGTAGGGCGTAAGCTGCAAATGCTGATTCTCTCGTCAACCCGGCCGATATCCCTCTACACAAGGGTTTTAGCGTTTTTATACTCTGTTTTTTCTGTGGAAACAGCCCTTGGTTTCTACCCCGTCGCAAATGGCGTCTGGACATGAAGCGCCGTAAGGATTTACAGTGGTAGGT # Right flank : TAATAAAGCGTTGTGCTGTAAACACAACGCTTTTGTTTTACTACAAAAAACGGAAATAAATAGGACTTACGCACTGTAGAAAAGAATCATCTTGTGAATCAAGATATAGCGGTTACCATTCAGATGGGGTACAACATTATATTGCCAGGTGTAGGGGCACGGCACTGCCGTGCCCCTACAGGTGTACCTCAGTAGGTCGGGAAACGTTATAAATACGTAGTTTCAGGTTTTTACTAATCATTTTTTGATGGTAAATAGACCACACGGGTAGGGGCGCACAGCTGTGCGCCCCTACGATTATCTGTACCTCACCAACTTGCAATCTGCTGTAGCTGTAAGTTGACACTAAATCCTATTGGATTTTACCTAACTCACGATCGCACCTGACACCCCATTCATAGATCCATTTGCAGAAGAAACCTTCACAGAATCGGCTGCTAAAGAATTGCTAGATTTGGAATTGCCTAGTACGCTTCGCTTCTTCTTGGTATTACCTCGTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCTTCTCTTCTGAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 20645-19877 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRQ010000038.1 Nostoc calcicola FACHB-3891 contig38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 20644 37 100.0 33 ..................................... GTTGAATTTGGCTTTGAAAATTTGCGATCGCTA 20574 37 100.0 35 ..................................... TTTTTAATAGCGTATTTTGGCGAAACCAAAAGTTT 20502 37 100.0 35 ..................................... GAGTTTCTCACAAACTGCAAATAATCCCCCAAGCC 20430 37 100.0 36 ..................................... TAAATAAGCAAAATCTGTTTGAGTGTCCATTATGTA 20357 37 100.0 43 ..................................... ATTTTTTCTTTAACCAATCATTTGAAATTTCAGCTTGCATTTG 20277 37 100.0 35 ..................................... GGAAACGGAACCATCGAATAACTCTAATATCTACA 20205 37 100.0 35 ..................................... TGGAAATGCTGAAGTCAAAGAAGACAACAAGATTT 20133 37 100.0 36 ..................................... CGTTTACACTATCAAAACTGACTTTAAGTTAAACTT 20060 37 100.0 36 ..................................... GAGCAAAATAGCGTTTTTGACAAGTTGAATCAAATT 19987 37 100.0 38 ..................................... ACCATCTAGATATGCCTTTCCGCCTTCCTTCCAAGTTG 19912 36 91.9 0 ............T...................-.G.. | ========== ====== ====== ====== ===================================== =========================================== ================== 11 37 99.3 36 ATTGCAATTAACCAAAATCCCTATTAGGGATTGAAAC # Left flank : GTTTTCATTTTGCTCAAGTTGCTCGTATCCGACTCACAAGTTCTGAGATTTTAGCCAGTTTGCGCCATCCAACAGGCTTTGTTCGAGAAGCAGCGATCGCATACTTGAATATGGTTTCACAGCGCGTCCTCTTTCAAATCCTACCCCAATTACAAAACGATTCACACCCTCTGGTAGCCGCTCAAGTTAAGGAGTTGCTCGAAAAATACAAATTCAAAAATTACAAGAAGTAGTGAGAAGTTTACCTCCAATTAGACTAATCTCTTTGCTAAGTGCGCGGATGGGTAGGTGTTTATGAGCAGCTGACTGCAAAAATGCCTCAATTGCCTTCTATGTAAGAATTTGACGCCAATAGCATCTCTCAAGCATCCGCGCACCTTATTTGGCCTAGCTTTCAGCGATTTGCATCTAGTAAAATTACAAGTTTTTGTGTTATGATTACCCCATCCGCGCAACAGAACCTTGAAAACCAAATATCGCAGTACTTTTAGACGCCCGCG # Right flank : TTCTTGCAAAAGTCTTTCTTTGCGTTCTCTTCTCTGCGCCTCTGCGCCTCTGCGTGAGACAAAAAAATATTTATGCAACAGGTCTATTGAAACAAGCAGCATTTTGAACCGCTTGCCGTAAGATAAGTGCCTAAAATTACAGCCAACCACTTTTCAAACAAATTCTTAGATCTTCATTCCTTGTTAGTCTAGAGAGTAAAGTCAAAACTAACAGAGTATTAGGAATATTCATGTACGTATTAATTGGTGGAGCAGGCTTAGTGGGGCTGAGTTTAGCCCAGAAACTGGTAGAACTGGGACATACTGTTGCTGTTATTGATATTGACCCTACAGCTTGTCGCTATGCTCGCGAACAAGTTGGAGCAATGGCTTTTGAAGGAAGTGCTGTGAGTACAGAAGTATTGTTAGAAGCTGGAATTCGCAAAGCCGGCTCTATGGCTGCTGTCTTACGCAGTGATGCCTTAAACTTGGCAATGATAACTCTTGCGAAACATTATGGT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 61554-60794 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRQ010000012.1 Nostoc calcicola FACHB-3891 contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 61553 37 100.0 34 ..................................... GACCTGGAAGAGGGAGACTCTTTAGAAGAAGTGA 61482 37 100.0 41 ..................................... GGCAGCGTTCACCAACTACTTACTCTCGCTGAGTGATGACC 61404 37 100.0 35 ..................................... GCATTGTGCCGAGGTTCTTTGCAGCACTGCTTTTG 61332 37 100.0 33 ..................................... CGATTGTATAGTTTGCAGGTGTGGCAGCTTCAA 61262 37 100.0 37 ..................................... GTAAATCTGCTTTAGTAAAGCAAGAATCGGGGCTAAA 61188 37 100.0 34 ..................................... TGAAAGACTCAAAAAGAAAATTGATTTTATCTAT 61117 37 100.0 35 ..................................... CCTTTACCTCTGATGAGGTACGGAAATTAATTTGA 61045 37 100.0 36 ..................................... GCTAAATCAAGACCCAGTAACTTTATACAGTCCCGA 60972 37 100.0 34 ..................................... TTCAATTTCACAGTTTTTCTTACTGGTATTGTTT 60901 37 100.0 34 ..................................... ATACCAGCGTGAAAAGTCTTTCCCACAAAATGGG 60830 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 11 37 100.0 35 GTCTCCAATAACAATTTGGAGGCGAATTAATGGAAAC # Left flank : TACACACACGGGTAGGGGCGCACAGCTGTGCGCCCCTACCCGTGTGTGTACCTCATTTACCTGAAATACGCACTACAGCGATCGCTTTATGGGCTGATGTTACTCAAGCTTAGAAGAAAGTCTCAAGAACTTGACTTTCAGTTTATGGGCAAAAAAGCATATTGCTTTCTCATTTCGGTAGATTTAGCAAGCAAACAGCATATTGCTTTCTCATTTCGGTAGATTCCGCAACCAAAGTCTCAGCAATTATTTCCGCGGAACCTTAGCTGTTTTTTTAGATATATGAAAAATTACGCTTGAAATCCTTACCGTAAATGCATTTCAGCGATTTTTAGCATAAATGAGATCCGCGCAAAGTTTGAAAAGGTTGTACTGTAAGCTTTTCAAGCTTTTTTTTCAACCAGAAACTTGACAAGCGATCGCTCAAACGCTACTTTTGAATGAGACCCGCGAAAACAGACTTCAAAACCCTGTTATTGCAAGTCTTTCAAAGCCTTGCA # Right flank : ATATTTTTATTAATTTCAAACCCGCGTAGGCGGGTTTTCTTTGTGTACACGCGGTTTCTAATACCATTTCTTTGTGAGGCTGCACCAAACTCTTTTAACTTCTTTCTTTCTTTCTTTCTTCCTTTCTTTCTTTGTGTCCTTTGCGTCCTTTGCGGTTCGTTTTTTTCTTGTACTTAAATATAGTTTAGCGCATCTTCATACAGAACTGGTATAACCACCCTTTCACTTGAACTTCTGAATTCTTACTCCTGAATTCTGAATTCTGAATTCTGCTAAATTAATTATATTTGTCCCCGTTCACGCAGATAAATTAAAACTTTTTCTAGACATTCATTTACAGATTCTTTGTGAGTTTTGAGAGTTATATCTGGGTTTAAAGGCGGTTCATAAGGAGAAGAAATGCCAGTAAATTCCGGAATTTCACCAGCTAAAGCTTTTTTATACAAACCTTTCACATCCCTTGTGATACAAACTTCCAAAGGAGTATCAATAAAAATTTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCAATAACAATTTGGAGGCGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 126700-126228 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRQ010000012.1 Nostoc calcicola FACHB-3891 contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 126699 35 100.0 36 ................................... TTTTCGTATGCTTCCATTGCTTCGTAGTAGCCAAGA 126628 35 100.0 38 ................................... CCATTTCCTGAAATTGACTTTCAGTAAGGCAAATTGCA 126555 35 100.0 39 ................................... CTGAAGATTTACTGATAACTAGTTTGTAATTGTCTACAA 126481 35 100.0 37 ................................... CTCCACCCCTTTTGGGAGGGGTATCGTTACACTAAAG 126409 35 100.0 39 ................................... TACAGTCATAGCAAACAAGGATATAATGCCTATATCCTT 126335 35 100.0 38 ................................... TTAACTGCAACGCCGTTAATGTTTTAGGAGCTAAAGGA 126262 35 97.1 0 .............................G..... | ========== ====== ====== ====== =================================== ======================================= ================== 7 35 99.6 38 GTTTTCAAATCACTTCCCCTAACGGGGATTGAAAC # Left flank : ATTCAATAAGCAAAATCCGCAATTACTTACTCAAAATGCCATTTGACTTACTCAAACCCCAGTTTGCTTTCTCATTTTGGTGTTTTCCGCAAGTAAAACAAACTTTGACTTACTCAAAATGCCATTTGACTTATTCAAACCCCAGTTTGCTTTCTCATTTCGTTATATTAAGTTTGCGCTCTAGATTGTGAAAACTGCAAAGTATTTTGTTATACTTCCTGGCAATAGAACAGAACCTTGAAAACTTAATATCACGTTTCCAAGCGAAAGTAAAAGTATGTCTTTTTACTTAATATACGCAAATTTTGCGCGGGGGTAGAGCGATCGCCAAAACCCTGATTCTTAGGTTGACCCCCGCGAAAAGCTTGCTGGGTAAGAGTTTGAATAGGGTATACCAGCACTCCATTATCAATAAATCTAGCTTATTGACAGGTAAATTAGACCCCCCGCTAAAATGACCCCTTCAAACCCAGTCATAGTAATAGTTCTACAAGGGTAGG # Right flank : TTCTGGAGATATTCCAAGCATTTCAATACTTTGGGTCATCAATTACACCAAAATAGAGAAATCAGAACAACTCCGTGCTTAATTTTTGCTTACTAAGGTTGAACTATAACACTGCATTTTCTCTAGCCTAAAAGTCTCTCATCCTTTGAGAGAGATAGTTTCAGCATAAGCGAGTTTTAATTCCTATTGATCCCTGATCAATAATACATATAATTATACGTATTGAATTATTGATTTCATTAAATCGGCGTTAACTAAAAACGCATAACCTATGGCTCTAGGCAATTTTGGCAATATTTATTCAGACGAACTAATTACTGCCACTGAGTTAAATCGTCAGCCTGGACGAGTTCTAGACAAGGCTTTAGAACATCCAGTGACAATTACTCGTAACGATCAGTCTTTTGCCTTATTGCGCCGGGAGGAAGTAAATTCTCTTGTCAAGACAGCTACTCAAAGTAAAGCTGTTTTTGAAACATTAACCGTCGCTTTTTCTTTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCAAATCACTTCCCCTAACGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 2939-2174 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRQ010000061.1 Nostoc calcicola FACHB-3891 contig61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 2938 36 100.0 39 .................................... GCCTGGGAGGGTGGCAGGATAAGAAGATTCTGGTGTCTC 2863 36 100.0 34 .................................... GAGTAACTGCAAATTTCTTTCTTTCCATTTGTTT 2793 36 100.0 37 .................................... CGTATGTTCGATTGCCAATAGCCAGTAGGTAGGTAGA 2720 36 100.0 37 .................................... TGTTGATACTCGCAACAACAATCTTACCTTGTGCATT 2647 36 100.0 37 .................................... TTTCTCTAATTAAAGACTTAGAAAGTTTTGCACCTGT 2574 36 97.2 40 ..........C......................... TTTGCTTTTATAGCAATCTCAAGAGAAGTGGAATTACGGA 2498 36 97.2 37 ..........C......................... AATCTCAATGTCATTTCTCTAGCGCATCGTTAGTTTG 2425 36 94.4 34 ..........C..C...................... GGATCAGATTCACCTCCCAGCGCACCAGCAACGG 2355 36 91.7 37 G.........C....A.................... GCTGGCAAGCTATCAATAGTGAAGACAAAATCTGTCA 2282 36 91.7 37 ....C.....C..C...................... GCAAAAGCGGCAGCACCTTTATTTTGCTTAAGCTCAA 2209 36 91.7 0 ..........C..................CC..... | ========== ====== ====== ====== ==================================== ======================================== ================== 11 36 96.7 37 CTTTACCGATTGCTCTAAATCGGAATTAATGGAAAC # Left flank : TTCTCGATGAAGCCTTGGACGGGAGCAAAGGTTATGGCTGTATATTTGGTCACGTTTGCTTTTGTCACTGGTTGCAGTCTTGTTTAAGTTACTGTAGAATTTTGAGTTTTTATTCAGTGGTTATACTTTGTAATAATTCTCGATTTGGGTAATTAGGAGTTATGTAAGGCTGGGTGAGTTATTGTGACTTTTATATCTTGGCGGAAATTTTGAGGATGTAAAGACTTTTTCATGCGAATGACGAAATTTTTTTTTACAGATGATTTATTTCACGCAGAGGCGCAGAGGCGCAAAGAGGATGAGGAGTTTGAGATGTTCATCGACGCATCTCCCCAAATCGCTGAAACCCTATATTTTTCGTTGAGATGCGTCGATGCCTTACAGGACAAGGGTTTGAGGTATGTATTTTACTTAATTTCGCACAAGATATATAATCTTTTTCAGAGATGCGTCGATTTGGCGGCTGGAAGCCTTACGGGGCAAAGGCTCCTGAACGAACT # Right flank : TAGAGCATTACACCAAAAAAATCCCCGGTTTTCCTAAAAAGCCGGGGATTTTATTTTGAAGACGCGATAAATCGCGTCTCTACAATGAGGTTTTGGGTTATTGCATTAAAATCTGACGGATTAAAATACTCATCACTTCGTCAGCATTGCCAGTTCGTACTAATGGACTCCAGTCGCCAACGCTAGCGTAGCCAATGATTTGCAGATGGTGAATTGTGCCAATAACTGCTTTTGAAGAACCCATTAATAAATGTTTAACCTGTTCTCTTTTGGGTAATGGATTTTGAGCAGGTTGATTTAAGGCGGGTATATTTAAGTTCTCACTATCCAAGTATTGTTGGAGTTCTGATGGATTTTCTACAAACTCTTCTTCTTGTGCCATGATGGTAATTACCTCTGAGAATGGGGGTTTAGGGAAAGGCGATCGCAAGCTCTTGCTGGAGGGCGATCGCCTTTCTTATTTGTATATTAGAGTATAATTTTATACTTGTAAAGTACTT # Questionable array : NO Score: 2.89 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTGCTCTAAATCGGAATTAATGGAAAC # Alternate repeat : CTTTACCGATCGCTCTAAATCGGAATTAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 18586-17966 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRQ010000006.1 Nostoc calcicola FACHB-3891 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 18585 36 100.0 39 .................................... TTTTTGATCGTTTAAATTCTCAAGGTGGATTGTTAACTC 18510 36 100.0 38 .................................... CTCCTCTTTGATTATTTTTATTTCTTTGATTCGGACGT 18436 36 100.0 35 .................................... TTTTGGCTGCCGTCAATTCTTGAACTGCCTGACTA 18365 36 100.0 39 .................................... GTTGTGGGTTATATTTCCTCCAACGATTTATACAGACAA 18290 36 100.0 33 .................................... CAGTTGCTAGTAACTCCTCTGAATAGCCCACTA 18221 36 100.0 40 .................................... ATTGCTGCAAATTAGAAAATTCTTTCAAAACTATCTAAGA 18145 36 100.0 39 .................................... ATTCTTATAGCGGCTTGCTGGAGGACTGTGTCCAGCTTT 18070 36 100.0 33 .................................... AATCCTCTGCGAATGGCAGGTTGTATCTCTTGA 18001 36 94.4 0 ............A..................A.... | ========== ====== ====== ====== ==================================== ======================================== ================== 9 36 99.4 37 CCCTACCGATTGGGTTAAATCGGAATTAATGGAAAC # Left flank : TAATGCTCCACAAAGAGTATCGTCATTCAACATTGATATCGAAAAGTCTGTACCTTATCGCCAAATAGCAGGAATCAAATAACGATTTTTGTTCAGGGGTTAGCTAGTACATCTGTTTGATTATTTCATAGCGTGCATCAGTCCTGGGTTATGTAGGAGTTTCATTTAGGTATGACTAGTGAAGCAGACTCGATCCCATCTCTGATGCACGCTAGTTGTTTGTTTAGATCGGGACTTACGCAAACAATAGCCGAAACCCTGATATTTAGTTAGTTTAACTAGGTTTTAGGATAATTAAGAAGATTTTGTAACATGGTCATCGACACCACTCAGAGAATCGCCCAAATGCCTATTATTTCGTTAAGTGGTGTCGATTGCTTACAAGGTAAGGGTTTGAGGTATGTATTTTCTGGGATTTTGTTTTTCGTGTACAATGCTTTTGAGAGTGGTGTCGATTTGGTGGCTGAAAACCTTACAGGGCAAAGCCTCCTAGACGAACT # Right flank : TAGGGGCGATCGCTCCCCAAGTCTCCTAATACCAATTCTCTATGAAGATGCGCCTAATTATTTTGGAATGTAGTCAATTAACCTCAGCGCCCCTTTGCGCTAACCTCAGCGCACCTTTGCGTTAAAAAATCTAATATTTAGCGCAGCCTCATAAAGAAACGGTATAAGAGATTTCCAATGAAAAAAACATCCCATCTCCGGCTAGTACAGCTGTGCTACCCGAAAAATGTACAAATAATTTGGGATAATTTATTTGTTGAAAATCCCGACAAAAGTGCGATCGCCTTTAACCAAAAAAAGGTTAAGACGCAACTCGTCTTTTTAGCATCTCCAAAAGTTTTGTAAAGTGGGCGGGAGGAGTAGCTGTCACTTCAATCATCTCGCCAGATATCGGATGCTGTAATTTTAGTCGCCAAGCGTGCAGTGCTTGACCAGGCAAATTTACTCCCAATGAACGACCAGAACCATAAACAGGATCGCCGACAATAGGATGACCGATT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 154330-153421 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRQ010000006.1 Nostoc calcicola FACHB-3891 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 154329 36 100.0 38 .................................... TTGATTACTGAACGTTTTGAGGAGGGAGTAGAATTTAA 154255 36 100.0 38 .................................... TCTAAAGCCTCACGTACATGATATTTTGCATTTGGAAT 154181 36 100.0 38 .................................... CTTCAATTGGAACCTGCTGTTGCTGAGGAGCGCGAGGA 154107 36 100.0 38 .................................... TTTACTGTTATCCATCTACAATTGAAAAATCCAGTACA 154033 36 100.0 35 .................................... CGTTTCTATAGGTACGCTAACAACGGTGAATCCGC 153962 36 100.0 36 .................................... TCGATCTTAAAGGCAGCAGTTTGTTGTCTAGTTTCC 153890 36 100.0 37 .................................... CCTGGGGTACACGCGCAGTCAAAGATACTGAAATACT 153817 36 94.4 35 ..........C....C.................... AGATAGGACGGCTTGGTGATCGCAGGCGAGGTTTT 153746 36 97.2 34 ..........C......................... ACGCACTCTTCAAACTGCTTTTTGTGGTTTGGAT 153676 36 97.2 38 ..........C......................... ACAAATGCTAAACCATGACCCTGATTGGTGCTAGTGTG 153602 36 97.2 31 ..........C......................... AAGCTAGTTTTGCCCGTTCCTGATAAACCAA 153535 36 97.2 43 ..........C......................... AAACACTTCCTCCAAGGGAAGCGTCTTGTAAAAGCAAGGGCGA 153456 36 94.4 0 ..........C...........A............. | ========== ====== ====== ====== ==================================== =========================================== ================== 13 36 98.3 37 CTTTACCGATTGCTCTAAATCGGAATTAATGGAAAC # Left flank : CTCAAAGGGACAGCGGCTTCTGTTGAAGAACTCAAAAAAGCTGAAACCTTGACTAAGGAAGTTCAAGGTGTGAAAACGGTGAAGGTAGAAGCAAAAGTTGAAGCTGTGAAAAAGCCATAGGAGAATAGCTGAACGGAAGGTACGGCATCTCGGTAGACTATATTTAGGACTTACGCAAAACTACGCGCTGTAGGGGCAATTCATGAATTGCCCCTACCTGTAAATCACTCTTTTCAGCTATTGTTTGTCTAAGTCCTGTATATTATGGTGCGGCGCTTGGCGACAACACACCCTAACTATGTGAGGTTTGAGATGTTCATCGACACCACTCGCCGAATCGCCGAAACGCTATATTTTTCGTTTAGTGGTGTCGATGCCTTACACCAGAAGGATTTGAGGTATGTATTTTACTTAATTTCGCACAAGATATATAATCTTTTTCAGAGTGGTGTCGATTTGGTGGCTGAAACCCTTACGGGACAAAGCCTCCTGGACGAACT # Right flank : ATTCCAGCATCCACAGGCTCATCTAGTCCGATCTGCCTTACCGATGCTTAGAAATTGTAATTGTCTCCCAGAATGAAGGTTTAGGGAAAGGCGATGTCTACGACGGGCTACGCCTACGCAGATTCTTGGCACAGGGCGATCGCCTTTCTTATTTTTATAAAAAAGTATGATTTTATACTTGTAAAGTATTTCGGCAAAAAATAATTAGCATTTATCAGCAATATTTTTAAGAACTTTATTTAAACTTCATCTTTTGACTAAATTTAATAAGTAAAACCTGCAATTACTTTCTCAAAATGCCATTTGACTTACTCAAAAGAAGCTTTTGCTTTCTAATTTTGGTGTTTTCCGCAAGTAAAATCAGCTTTGACTTACTCAAACCCCAGTTTGCTTTCTAATTTTGGTGTTTTCCGCAAGTAAAACAAGCTTTGACTTACTCAAAACAAGCTTTGACTTACTCAAACCCCAGTTTGCTTTCTGATTTTGGTGTTTTCCGCAAG # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTGCTCTAAATCGGAATTAATGGAAAC # Alternate repeat : CTTTACCGATCGCTCTAAATCGGAATTAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 215431-215103 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRQ010000009.1 Nostoc calcicola FACHB-3891 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 215430 35 100.0 38 ................................... CAAAAAATGTCACTACTCTGTTAGACAGTAAAAATGAC 215357 35 100.0 38 ................................... ACCTGCTGAACATTTACTCCAAACCGGAATTCTGGACA 215284 35 97.1 42 ....T.............................. AAAAACAGAAATCCAACAATTGAAAAAAGACCACCCAAGAAT 215207 34 94.3 36 ........-T......................... ACAATACTACTATGATCTACTTTGTGAGATCAAAAG 215137 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 5 35 98.3 39 GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Left flank : CTCTGCGAGACGCTAACGCGAACAAGGTACTCCTAAGATGGGGATTGTGAGCGGGGGATGAGGATTGCATATGGAATTGATTTTTTACTTGGTAAAAACAAATTACAGACGTATGACGAATCCCCAAAATTTTCTGGTAAACTAAAAATTGTCTTGACCATCAATGCCATAAGCGAAAACCAAGCTAACAGGTATATGTTGCAAGAAAAAGTTTGGGTCTTGGGAACCAGGACTCCTGCCCAGGGAGGGAATGTAAGACCAAAAAAACTACGAAGTTTTTGAGGCTATTCCCAATGAATTGGGAAGCCCCGTCCGTCTTACGGCGGGGTAGTTCACACCAAATCACAATCACAAAGACGCAAAGACGCGATAAATCGCCGTCTCTACAACAATCAATTCTTTGTAGAGACGGCGATTTATCGCGTCTGATGCCTTAACCGAACAGTATTGGATCGCCATTAGTCAATGCGATCGCATTTGCCAATAGAAAAAGGAATTAT # Right flank : CCTACCCTTCCAGAAGCCTTATCCAGAGAGGGTTAGAGATACCCATTTTAGCGGGGGGTCGAATTTAGCTGTCAACAAGTAGAAATTATTGACAATTGGTGAATCATCTACCCTTGTCAAACTCTTACGCAGTAAGCGATTAGCGGGGGTCAACGGAATCATAAGGGTTTTGGCGATCGCTCTACCCCCGCGAAAAATTTGCGTATCAAAAGTAAAACTAAGCACTTGTAGTTTGATTTTGAAACTTGATATTAAGTTTTCAAGGTTCTATGGCTATGAGCAGTAGTATAACAAACTACTTCAAATTTTGAACGCCTAAAGTATTAACTTTTTTATCGCGCAGTCAAAAGGTAAAAAAGAAAGAGTTTTGGGAGATGTCCGAGAGAAAAGTTAGCACAGAGCGATCGCGCGATGTAAGTGTGTAATATCAGCTTACTGAATTTATCAAAATAAATACGCGATCTACTGAAATGAGAAAGCAAACTCCAGTTTGAGAAAGC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //