Array 1 2139-342 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADNB01000032.1 Gardnerella vaginalis ATCC 14018 = JCM 11026 strain ATCC 14018 Contig40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2138 28 100.0 33 ............................ CCTTCACGTTCTTTTGCTTTACAAGTATCCTGC 2077 28 100.0 33 ............................ CGGCACGGTTAAGCCGTTTGATATGCCGCTCCC 2016 28 100.0 33 ............................ CTCATCATTGGCTACACTCTCTGGATGCTTTAA 1955 28 100.0 33 ............................ CCGTAAAGTTTGCATAATGCGGCAACCAGATGC 1894 28 100.0 33 ............................ TGTGTTTTTACGAGGTTTTATACCTTCAAAAAG 1833 28 100.0 33 ............................ TCGTTAATGCGTGCTAAAAAGTTTTGTAAATAC 1772 28 100.0 33 ............................ TTATAAGCTGTAATTATAGGTGTAATATCTTTA 1711 28 100.0 33 ............................ TGGTTTGACGGTTCAGAAACAGATGTTTATGTA 1650 28 100.0 33 ............................ TATCAATTTAAGAGCGAAAAGAAAAGTTTTTAT 1589 28 100.0 33 ............................ CCGATGCGCAATGAGTGATTATGATTTTAGAGC 1528 28 100.0 33 ............................ CCGATGCGCAATGAGTGATTATGATTTTAGAGC 1467 28 100.0 33 ............................ CACTCTTGTAGATGCTGTGCTTGAGCGGCTTAT 1406 28 100.0 33 ............................ GCGTCGTGCCGCGGCGTGCGATAGTGTCATCGA 1345 28 100.0 33 ............................ TTGTACTAGGTGGCGCAATCGATAGTTTTATTG 1284 28 100.0 33 ............................ TATGGCATTAAACGGCATTGACATATCATGGTA 1223 28 100.0 33 ............................ TATTTTCCTTATTTTGAGCTAATAATAAATTTA 1162 28 100.0 33 ............................ TAATCAAATTATTCGGATACTAAAAACCAAACC 1101 28 100.0 33 ............................ TCGTCATCACTCCATCCTTAAGCACAGGCTCAA 1040 28 100.0 33 ............................ TGAGCTTGTAAACGCTCTTGTAGATGCTGTGCT 979 28 100.0 33 ............................ GTATGATGCATTGACGTGACATCTAAAGAACAA 918 28 100.0 33 ............................ CTAACACGTTAGCAGATGTAGCCATTCGTGAAC 857 28 100.0 33 ............................ CAAACGTTCTTCATTGCTTGCATTGCAAAATTA 796 28 100.0 33 ............................ CCCAATGGCTTCCTCATCTCTAGCACGCTGCGC 735 28 100.0 33 ............................ CTTGTATTCTCAATCAGAGAATACTTTGAGTAT 674 28 100.0 33 ............................ CGAAGCCTGCGAAGTGTTCCTGCTGGAATGTTT 613 28 96.4 33 ..........................T. CACGCCCGAATTGGGTATACTAAGTGTGTCGTT 552 28 100.0 33 ............................ TGTCAAGTGTACCATCTTTTAATTCTTGTGCTA 491 28 100.0 33 ............................ CGTATCATACTTTCTGAGTTTTGTCCTTATTGT 430 28 100.0 33 ............................ CGAGTTGAGCGGCAAAGTCGAACATGAAACACA 369 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.9 33 GTATTTCCCGCATACGCGGGGGTGATCC # Left flank : TTTATTCCTAATGAAATTATTGAGCTAACTGGTATTACATCCAACATGCTTGAATCTTATGGTGTCGGATTAGATTTAGCATTAAGAGAATTTATTGATTTTGTGGGAAAATTACCATTATTAGGATATAACGTATCGTTTGATATTGGATTTTTTAATTCGGCTTTATTCTCATTAGATGAGAAACTCAGCAGTGCTTTTTCTGTTAATAAAGTTATTGATATTTCACGTTTTGTGAAGCATGATAGGAGGTTTTTGAAAAATTATCAGTTGAAGACTGTTCTGCATGAGTATAACATTTCTGAGTCAGTTCCTCATAGAGCTCTCCTGGATGCTAGGCTAACGGCGCGTCTTGTTCTTAATTTGACAGAATTGTTAAAGTTTCTTTCATAAGGTTATAATTTTGAAGGATTGTGTGCAACAATGGGTTAATTTTGAAAAGTAAATAGTTTTTACTATTTAGTCTTGGAAAAATAGCTATTTTATTGGGATTTTTAAGT # Right flank : CTAAGCACCCTAAAAACGCGGCGGGTATAACCACGTCTTTTCCGCATACGCTGGATAAAACCTACATGTGCGGCAAGTGTGGTTGTAGTAGTCTAGTGGTGGATATGATAGCGGACGCACAAGTGGAGGTTAAAACGCTACGCGGCGTATTATATCGCGCGCGTTGATTGTTTTTATAATAGGGTAGGCAAATAAAAACTTGCCTACCCCTTATTTTTACTGTTGATTGTTTGACTCTGCTTTAGCTGCTTTACTAACCGCCTCTTGCAGCGCTTGCCATGATGACGGCAGCTCTACAGGGCGATGTGGGCGGCGCGCAGCCCAATCACGTATAATGTCATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //