Array 1 84237-85589 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWZM010000003.1 Escherichia coli strain 2012FS138 NODE_3_length_207412_cov_33.092559, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 84237 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 84298 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 84359 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 84420 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 84481 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 84542 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 84603 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 84664 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 84725 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 84786 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 84847 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [84871] Deletion [84888] 84889 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 84950 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 85011 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 85072 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 85133 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 85194 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 85255 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 85316 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 85377 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 85439 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 85500 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 85561 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 111139-112448 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWZM010000003.1 Escherichia coli strain 2012FS138 NODE_3_length_207412_cov_33.092559, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 111139 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 111200 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 111261 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 111322 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 111383 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 111444 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 111505 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 111566 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 111627 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 111688 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 111749 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 111810 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 111871 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 111932 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 111993 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 112054 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 112115 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 112176 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 112237 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 112298 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 112359 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 112420 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //