Array 1 23195-20071 **** Predicted by CRISPRDetect 2.4 *** >NC_006391.1 Haloarcula marismortui ATCC 43049 plasmid pNG300, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 23194 30 100.0 37 .............................. GTGGAACCGGTGGAACATCGACAAGGTCGTGCTCAAG 23127 30 100.0 34 .............................. TGTGAGGTCGTGTCGGCTCATAGTTGGTTGGCGG 23063 30 100.0 37 .............................. GGGTTGACAGTTACTTTATGTCCGTTACAGGTAGTGG 22996 30 100.0 36 .............................. GAGAAGCTGTCGGACTTTGGTCGCACAGTCAGCGTC 22930 30 100.0 37 .............................. TGCCTTTGCTTCTCGAATCTGCTTGATTTTGTCCATC 22863 30 100.0 34 .............................. AGGATGTGGCAGGACGCCCACCGCCGCATCGCCG 22799 30 100.0 36 .............................. GATAATAAGGTAAAAGACACTCCTGCCGCGAAATCC 22733 30 100.0 35 .............................. GTACTGGACAATCGAGGGTCAACTATCAACTCGGT 22668 30 100.0 35 .............................. AAATGCGTGAGCACGTTGCCCCACTATCAAGACTA 22603 30 100.0 34 .............................. AGAGCCTCTGACCCTGCTGTTGTGCAACCCGATG 22539 30 100.0 37 .............................. TAAGTCGTTGTATGTCTCGGGCTCGGGCAGTCCACTA 22472 30 100.0 37 .............................. CAGCATATCACTCTGCCTGTGACTGTGCCATCGGGTC 22405 30 100.0 36 .............................. TCTCGTTGATCGGACTCCGGATAGATTTCGAGTTCG 22339 30 100.0 36 .............................. CCCTCAGCAATGTGGTGCAGCACTACGTCGGCGTCC 22273 30 100.0 35 .............................. ATCCCAGACACGTCTTTATCTTCGTCGTCACGCCA 22208 30 100.0 35 .............................. TCCTTGGCCCGGATATTTGCATCATACAACCCCTC 22143 30 100.0 37 .............................. TCTCGCACTGCATTATTTATCGTCTCTGTGTCTATGT 22076 30 100.0 36 .............................. AAGAACAATTGCATCAGGCAATGTCGATTAGGAACG 22010 30 100.0 35 .............................. GTCACTCATGCACGACCACCGTCCGAGCGTCGCGA 21945 30 100.0 36 .............................. CCGTGGATGTTGACTTTGATGAAGTCAATGTCAGGT 21879 30 100.0 36 .............................. TCCGTCTCGGACTCCGTGTCGGTGGCGTCCGTCTCC 21813 30 100.0 37 .............................. TTCTTACTCATTGTTGTCCGAGTCTTCGCCGTTGTCG 21746 30 100.0 34 .............................. GCTGGTCTCCTGGCTGCTGTCCTCATGGCTGCCG 21682 30 100.0 36 .............................. CCGCAGAAGCGCCGACCATCAGCGTCGGAGGGTTTG 21616 30 100.0 35 .............................. TCGATCACCTCTTCGCTGCCCTCAGTGAAAAATCG 21551 30 100.0 35 .............................. AAGCCAGTCCTTGAAACGCAGATTGACGATATCCA 21486 30 100.0 37 .............................. GATGGCTGGGCGTGCACGCTCACACCGGAGTCAGCCG 21419 30 100.0 36 .............................. GTCTATCCGAGCGAGACGAACGCGCTGAAAGAAATC 21353 30 100.0 36 .............................. GGGGGGCGGCTGCGGTTACGCAGCCCTCCTTTAGTG 21287 30 100.0 37 .............................. GTCCATGCACTCCGCCATGTAGTCACGAGCGTAGCGT 21220 30 100.0 37 .............................. AACCATGTCAGCACAGGCCTGATTCATCTGTTCAATG 21153 30 100.0 34 .............................. GAGCTGACGCTCGATACCGAGAACAACACGCCGA 21089 30 100.0 35 .............................. CGTCCGGCTGTTCGCCGTTGGCGGACAAGCGTTGG 21024 30 93.3 36 ...A............C............. GACCACACGGCGTAGGCTTTGCGCTCGCCGATGCCG 20958 30 93.3 37 ...A............C............. CTCATGCAACAATCAGCATACCGCAAACCCGGCGCTG 20891 30 90.0 36 ...A.......G....C............. TCGACTAAGAGATTCCCTTCGGCGTTCTCCGCGAAA 20825 30 93.3 35 ...A............C............. GGCATGATAGCAGTTAGTCGCGGCGAACACTGGGA 20760 30 93.3 34 ...A............C............. CAAATCACCGATATCGAAGTCGTCGTCAGCGATG 20696 30 93.3 37 ...A............C............. ATGGTCTCGTGCCATCTCATCGTCCCTCGGATAGCAA 20629 30 93.3 37 ...A............C............. ATGGTCTCGTGCCATCTCATCGTCCCTCGGATAGCAA 20562 30 93.3 35 ...A............C............. AACAAAGCCGGTATTGATGAATCCCTGCCATGCCA 20497 30 93.3 36 ...A............C............. GATTAACACGGATGACTGGGATTGGCTCACGGCCAA 20431 30 93.3 36 ...A............C............. CTCCATGATGCGCTCGTCGGTCCATCCCTGGTCGAA 20365 30 90.0 36 ...A.......G....C............. GTAGTCCGTTGCATACACCGCCGTCCCACCACACGG 20299 30 93.3 35 ...A............C............. ACTGTGGGCTTCGCCGATGCCCAACTCACGGCGTA 20234 30 96.7 36 ...A.......................... GTCAGCCTCCTAGAGGACGTCGTCGACGCGCCGGCC 20168 30 100.0 38 .............................. AGTTGGGGAGGCATCCCCGGTATCGGAGTGCTTGGCGG 20100 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 48 30 98.1 36 GTTTCAGACGGACCCTTGTGGGGTTGAAGC # Left flank : TTGCTTCACCGCGTGCGCGTCGTTGACGATACGACGCGTCATGCCTGCCCGCCGGCACGCTTGGCACGAAGCGTGGAGCCCTGTACAAAGGCCACGTATCGGCCGAGATAGCGGTCGCACATCATACCGACCCCCGGGGAGAACACCAGCATTGAGAGCTGGGGCTGCACGGATAGTACGACACGAACAGCGGTTGGCCCTCCCGAGGATACGGGAACTTGTGGCTGGAAATCACATACCGCGAGGCCGCCTTGCGCGGACGGACGGAACTCCCGAGACGCACGAGCGGGTACCCCGCCGTATACAGAGGGTGGCTCTCCGGCCGCCCGCGAAAACGGAAAAAGAGACATCACACTCATTACGCATACTGTCGAATTGCAGGAACCTCGCACCACGCCTATTTCATCGACCCCCCGGGGGTTCAGGGGGTATTGACGGTCGACGAAAGTACCGCTGTGGAAGCGCCCGATAGAGTGGCTGTACTGCCCAGATCCGGCATG # Right flank : CGAGTGCTAGTCATCAGCGGCGGCTTGCGCAATTGAAGTCTGAGCAACGTCCTGACTCGGGGACAGCGGCCCGATTCGAACCCCTGAGTGGTCCGAGTAAGATAGCTCTGAGTCCACAGCATGCGATGTAGTAGTTGCCTCGTGGCAATCGCTACAGAACGCCTCCAGGATGGGCCGCCATCGCGAGAGTCCCAGCTCGTCGAGAAGCTCCTGGTAGTCGAGATATCCGAGGGCGGCGTATTCATCCGGCGGGATGTCCAGCAGCCCAGAGTCATAGACTGGGCCCAGCAGGATGTGCGATGGATGGCCGGCCGGTGACCCAGGGTACGGAGTGTCGTCGTGGTACGGCTCGCTCACCGATGACGTCGACGACCACCACGGCTCCAGGTGTGCGACGAAGCCCTCGCCGGTATCTTCCACGAGGAAGAACGCCCGCAGCGTCTTGTGATGGCGGTTATAGGAACTCTCTGAAGTAATCTCGATGAGGTCCTGCCGGTCGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGGACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.30,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1032-1324 **** Predicted by CRISPRDetect 2.4 *** >NC_006392.1 Haloarcula marismortui ATCC 43049 plasmid pNG400, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1032 30 100.0 36 .............................. CCCGCCCACTTGTTGCTCATGTAGACCTTTCCTGAC 1098 30 100.0 36 .............................. CCGTCCCCTCAAAGTCCAGTCCTTGCACACGACGGA 1164 30 100.0 35 .............................. TCCCACACGTTGTGGTTGTGGCCGTGGACATACAG 1229 30 100.0 36 .............................. TGGCGGGACCAGCACAAAACGCTGAAAGAAAACTCT 1295 30 86.7 0 ...............AT.G.C......... | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 97.3 36 GTTACAGACGGACCCTCGTGGGGTTGAAGC # Left flank : GCGTGGCCTGTCTACGCGCGGGCGTGGTTCGTATAGCAGCGACAAGCCACCGATCTTCATCATCGCCGACCGTGGCACCGAACAGCGGTACGTGATTCCAGCGAAAGCCGCAGACGAATCGACGATTCGACTCCTGCTGGCCGACCGCCAGCAGGAGTCGCTCACTGTCTATACCGACGGCTTTCGAGCGTACGAACCGCTCGAAGATGACGACGCATTCGACCGCGAATACGTCGTCCATGGCGACGGTGAATACGCCGACGATGAGGTGCACGTCAACACCTGCGAGAGCCACGCGTCGCAGGTGCGACGGTGGCTCTCGCCCCACCGAGGTATCTCCAAAGACAAGCTGACACAGTATCTTAGAGCGTTTCAGCTACGCCGAGAGCTGTTTCGGAAACCCGGCCGAGATGCTCTCAAACACGCTGTTCAAGCAACGCTGTGAAATCAACAATGTGCTACGGATGAGCGTACTGTGAAATACTGGATGGACAAATATG # Right flank : CAATTCGCCCGCATCACAGTTATCGAAGGTTATCGTTACCACCGACCTCGTCTACGGCGACCGACACAAACGGCTTAGTATTTGATCTGGTGTGATACGGATTAGTGTAGATTATTTTCGGATTACACCGGCTCCGAGGTGGGTGGACACCGGTAAATTGCTACACAACTCCGTATGAGGCATCGCGATAGAAGCGCTGTTCGCTAAACCGCTCGGTGAAATCGGCGTCCCACTGCTTGGCCTCAAGCACGGCCGCCGACAGCCCGTACATGCCCTCGGTGTTGCCGTCGCGTTTCTGTCGCGCCGCATCTCGCCGGGCGTCAGCAGACTCGAAGAGCAAGCGGTCGTTGTACCCGCCGCTGTCCGGGAGTGTCGTCTCCTGCAGCGTGTCGAAGCCGAGGATATCGAGTACTTCGTCGATCCATGCACCCAGCAGTTCGTCTTCGTTGTACGACGGCAGCAGGTCGCCTTCGCCTTCCCAGAGCGCTTGGAGATCCTCG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGGACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.50,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 35013-36696 **** Predicted by CRISPRDetect 2.4 *** >NC_006392.1 Haloarcula marismortui ATCC 43049 plasmid pNG400, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 35013 30 100.0 37 .............................. CTGTTCGGTGTCTTCGTGGGCGCGTGCGTCGGGATCG 35080 30 100.0 35 .............................. AAATCCTTCGCCGCACTCTTTGCATAGATGCACTC 35145 30 100.0 35 .............................. GAGGGAGACGCCGACGACCAGGAGGCTATCCTGCC 35210 30 100.0 37 .............................. CGAGCTCTTGCATGGTCAGAACAGAAAGTCGCGAACG 35277 30 100.0 37 .............................. GACCCCCGCACTTTCGCAAGGGGCCGCTTAGTGTAAG 35344 30 100.0 39 .............................. TCAGACAGGAGTACCTCGCCGAGTTCCTCGACGACACGG 35413 30 100.0 37 .............................. CGCGGGTCTGGCTCGATGGCGACGACATCGACATCAT 35480 30 100.0 37 .............................. AGTCGGAATGTGCGTCTTGCTCCCGTCGTCGTTGATG 35547 30 100.0 36 .............................. GGCCAAGACCTCGCGGCGGAACTCACACAGTACGTC 35613 30 100.0 37 .............................. GAAGTCCACCGTATCACTGGACCGCGAAGTTCGGAAA 35680 30 100.0 34 .............................. CGACTGAAAGAGTTGTGCGTGTCGAATCATGAGC 35744 30 100.0 37 .............................. CCCCGCCGGTACTGCGGGGGCTCCAGCGAGTCGTCTA 35811 30 100.0 37 .............................. CCCCGCCGGTACTGCGGGGGCTCCAGCGAGTCGTCTA 35878 30 100.0 37 .............................. GGCCCACCGAGTGCTTGTGACCAGCTGCGGCCACCGC 35945 30 100.0 36 .............................. CATGCACGACGGCGACGTGTCGGTGCTCAACTGCCT 36011 30 100.0 36 .............................. GCCAACACTAGTCACGTCAACAACAGTCCCAAACTG 36077 30 100.0 37 .............................. CGACTGTCCACGGTATCGTTTATCCGCGCGTCAACGA 36144 30 100.0 38 .............................. GATAGTCACATCAACACTGGTTGTGCCGTTATTGGTTA 36212 30 100.0 36 .............................. CTGCCGTTGAAGGTCACTCGTATGTCGTCCACCAGA 36278 30 100.0 36 .............................. CCGGTCGACCTGATTTACAACGTGACTGGCCACGAG 36344 30 100.0 35 .............................. AGCCAAGCCATCAGGGGATCGTCCGCCGAACCCGT 36409 30 100.0 33 .............................. CCGACGAACGGCCCGATTTGGCCGATCTCCCTG 36472 30 100.0 34 .............................. ATCATCTGGGGGCCGGAAGTGTGGCTGACCGGCG 36536 30 96.7 35 .............................C GACATCCTCGACCACGAAGTCTGGGAGGAAGTCCA 36601 30 83.3 36 ...A............C...TC.......C GAGAACGAGGACGGAGACCTCATCCGACTGTTTTGG 36667 30 70.0 0 ...A.......T..T...A.T....T.TCG | ========== ====== ====== ====== ============================== ======================================= ================== 26 30 98.1 36 GTTTCAGACGGACCCTTGGGCGGTTGAAGT # Left flank : AGGTTGTGCTCGCCGAGACGCCCTTCGAGACGCTTGCAGAGTGGTGTGAATATACTCGTAGCGAGCGCGGGTGGGATATCGGCCCGCACGTCGGTGGGTCGCTCGTCGGCGATCTCGTTCGAGGTGTTGAGGCGTGAGCTGCACTGTCGAAGAGCGCAAGCGGGTGCGACGGGCTGCGAGGGCGATTCAAGAGGAAGTGGCGACTGAGTCCGTGGATGTGCTTGCGCCGAGTGCGAGTCAGTATGGTGAATGGACGCTTGATGCCGTGCTTCGGGATGCTGAGGGTGTGCCGCCAGAGGTGTTACGTGAGCTGGCGCTGGCTGGGTTGACGCTGCAGCCGACGCCGTCGCAGGCTGAGTTTCAGCACGTGGCAGCGACGGTGTAGGACGGTGATGGCTATTTTCATCGACCCCCCGGGGGTTGCGGGGGTATTGGCGGTCGACGAAAATAGTGAAGTGAAACCAGGCTAGAAATAGGCTGTGTCCCGGGAATCGGGCATG # Right flank : GGGTCTGACCAGCGAGACCGATGACCGCTATCGAAGAAACACATTCAGCTAGCCGTGCTAGAAGTATATGTGCATGGAGCCATCTAGTCAGAACACAGTCCGGTCCAACCGGGCTCAGTCAGCAAGCCTGCAACCTGGCGGGAGGAGGCTTGCTGACGCAGCAAATGCCACCAGCCAGACATCGAAATCTGGCCGTGCCAGCAGCCGCTGCTTTGGCACGGACGGATTTACGATTTGTGGTGGGTGGCAAGGAGATCGCTATGAGATACGAACATACGACCCACCCCACGATGAATTGGCTCAAGAGAGGGCACATCCGTGCCGATCCTGAAGTGACGGAGACTACAGAGTAGTCCCGGACAACACAACCAATTTAGCATCGCCAGTGAATACCGTAACTGTCCCTACAAAATAGGTACTTACAGATGGCGCAGAATGCTGTTGAAGCAGCTACCCGTGTTACTCGGGAACTCGTAGGGACCTGTTATCAGCTGGCCCCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGGACCCTTGGGCGGTTGAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 46654-50046 **** Predicted by CRISPRDetect 2.4 *** >NC_006392.1 Haloarcula marismortui ATCC 43049 plasmid pNG400, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 46654 30 100.0 38 .............................. GTGGCACCGGTTGAGTCGCTGACCGCCGGCGCGTACGC 46722 30 100.0 35 .............................. CTGTAGGCCGCCAGCACGAGCACGGCCCAGAGCGG 46787 30 100.0 36 .............................. AGACCCTCCCCTCGTGGATGCACTCGGCACAGTAGC 46853 30 100.0 36 .............................. CGGCTCTGAGTATGAGGGAGTCCTGTTCAGCCAAGA 46919 30 100.0 37 .............................. GTGGTGAAGTCGCCCGCAGCGTATTCGAGCTTGTCCT 46986 30 100.0 36 .............................. CTGCGGCGGCTGTTTGAGTTGTACCTTTCGCTGGTC 47052 30 100.0 36 .............................. GACTGCCGGAACCAGAATACCGGCACAAAGTACGAG 47118 30 100.0 35 .............................. ATCGACTGCCCGAGAGACCCATGATTGCGAATAGT 47183 30 100.0 37 .............................. GCCGCAACGAAGCCCGGCAGGAACTGGGGCGTGACGA 47250 30 100.0 36 .............................. TCGAAGAGCGCGATCGGGGCGAGAGGTTTGACGTGC 47316 30 100.0 37 .............................. GCGTTGGTCGAGTTTGACCGTGCCGTAGATTGTCGCG 47383 30 100.0 35 .............................. TCCGAGACGATGCACGCGCTTGCCCAGCAGTTGTG 47448 30 100.0 36 .............................. GACCCACAGGAAACACTTTTCGCCTCACCAACTCTG 47514 30 100.0 36 .............................. AACCCACTCACGGCGGCGAAGGACGCGCTGACGATC 47580 30 100.0 36 .............................. GGCCGGCACGGCGTCACGCGAGAGATGTGTCCTTGC 47646 30 100.0 35 .............................. GGATCACGGTACAGATGCGGCGACAACTACGCGAA 47711 30 100.0 37 .............................. GGAAACATCTACGCGCGCACCAGCCTGCTCGGAAACT 47778 30 100.0 37 .............................. TGGTACTCCTCGCGCGTGGTGGGGTACGAGGCCGTCG 47845 30 100.0 36 .............................. CCCGACGGCGGCGACGGTATCCCGGAGGACAAGACC 47911 30 100.0 36 .............................. TGCCATATCCACGAGCCCTTTGACATCGCCGTCCTG 47977 30 100.0 35 .............................. GAGCAAGACGAGTGGCTCCAGTTCCCGACCGCCGC 48042 30 100.0 37 .............................. AAACAGCGCGAGGATATTGTTCAGGCCGTCGAACAGG 48109 30 100.0 36 .............................. TTCGACCGCTTCGGCGGCTGGGAATGGTCGTCGACT 48175 30 100.0 35 .............................. CTGATATGTACTGCTAAGAGGTCATCTCGGATACC 48240 30 100.0 37 .............................. GTACTCGTCACACCACGGGCACACGCCGTCGTCAATC 48307 30 100.0 36 .............................. CAGTGGGACGTGTTCGGCCATGCCGTAGATAGACAG 48373 30 100.0 36 .............................. TCTACTACCCTATCGACGACGCCGAAATTTCGCCCA 48439 30 100.0 35 .............................. TGGACGGCCTCCGCACTGTCCTCACCATCGTCCTC 48504 30 100.0 35 .............................. TTGATTGAACTATCCACGTCGCGTTTGTGTGCCTC 48569 30 100.0 34 .............................. ATGAGGTTGTTTGGGACACTGCTATTCGGCCGCG 48633 30 100.0 36 .............................. ATCGCCACACTCCCCAGCGCGGTCAGCAGCCCGACG 48699 30 100.0 36 .............................. AACGACCGGTACATGATTGAGTGGCGCGAGGGTCCG 48765 30 100.0 34 .............................. GACGGCGTCGACTGTGGGTCACTGTTACCGTCGC 48829 30 100.0 37 .............................. ATCCGCAGTGGGCCCGATGACATCTACGTGTATCCGG 48896 30 100.0 37 .............................. AAGAACGATATGGGTGTTAGGTCGCACCATTCGCAGA 48963 30 100.0 36 .............................. GACTACGTCTACCCCGAGGAGGAGGTGCGCGACTGG 49029 30 100.0 35 .............................. ACCATAGTACCATCATGGCACTCTGGACTTATAGT 49094 30 100.0 38 .............................. CTGGAGCGCATCGTAGTGCACGCCGCGGTCGTTCGCTC 49162 30 100.0 35 .............................. TCGACACCATCAACGGGTTGCTCGGCGACGGGACG 49227 30 100.0 36 .............................. CCCGCCCACTTGTTGCTCATGTAGACCTTTCCTGAC 49293 30 100.0 35 .............................. ACACTCTCGCACTCGATCCCGGACCTGCTGGGATC 49358 30 100.0 36 .............................. CCGTCGAAGGACCGCCTTGGGTGGTGTACTCGGCGG 49424 30 100.0 35 .............................. TTGCGGACCCGGCGGCGATGGACGACGATGTCGGC 49489 30 100.0 37 .............................. CATTAGCGAGATTAGCGGTATGGGTTCCATCATCCCA 49556 30 100.0 38 .............................. GAGGACAGCGTCTTTGTGGTCCGCCAGTTTGGACGGGT 49624 30 100.0 37 .............................. TGGACGAGCGCCCAGCCGTCCTTGTTGCTACGGAATA 49691 30 100.0 35 .............................. GAATTTGTTGACGACCCACGGGAGACCGACGATGC 49756 30 100.0 35 .............................. CACTTGCTCAATCAGGGACTGCGTTGGTATGGCCT 49821 30 100.0 36 .............................. AGCACATAGTCGATGCTCGGGTCGTGCCAGTGGCCG 49887 30 100.0 36 .............................. GTCGCCGACGACGACCCGTTCGTCCTTCCCGAAAGC 49953 30 100.0 34 .............................. ACCGCTATAACAATGAACATCCAATACTACGTTA 50017 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 52 30 100.0 36 GTTACAGACGGACCCTCGTGGGGTTGAAGC # Left flank : GCAGACCGTTGATCATCCGAGATTGAACAGGAAGGTGAGCTACCAGTACTTGCTCCGAGTCGAGGTGTACAAACTAAAAAAGCACCTGCTCACTGGTGAGGAGTATGTCCCGTTCAAGCGGTGGTGGTAACCATGGTGTACGCGATAATCGTCTACGACGTACAGGCCGATCGGACACCGAAATTTCTCAAATATCTCCGGCGGTATCTCACGCACGTACAGAACTCTGTATTCGAGGGCGAGCTCACAGAGGGGACGCTCGTTGAAGTCAAAGAGACCCTCCAATCAATGCTTGAGGAAGAGGAATCCGTGATGGTTTATCGGATGGACTCGGGGAGTTATGTCGAGCGATCCGTGTACGGTGACGATCCAATGGACGACCAACAATTCCTCTAGGTATTTTCGTCGACCCCCGGGGGGTTGCGGGGGTATTGGCGGTCGACGAAAATAGTGAAGTGAAACCAGGCTAGAAATAGGCTGTGTCCCGGAAATCGGGCATG # Right flank : CGATAATACTGTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGGACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.50,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //