Array 1 9033-7471 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCEM010000032.1 Flavobacterium psychrophilum strain 99090 contig00032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 9032 46 71.7 29 A.AA.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG T [9028] 8956 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 8880 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 8804 46 100.0 30 .............................................. ATTTAATGTAATTGTACCCGAACCAGCTCC 8728 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 8652 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 8577 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 8501 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 8425 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 8349 46 100.0 30 .............................................. AAAAGATTTAGCAACATAGATGATTGTTTT 8273 46 100.0 29 .............................................. TTTTACTTTTTATTTAAAGCAACTGTAAT 8198 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 8122 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 8046 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 7971 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 7895 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 7820 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 7744 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATATTTAGC 7668 46 100.0 30 .............................................. AAGCGTTTTTTACTTCGTCGCTTTTCTCTT 7592 46 100.0 30 .............................................. TGTTTGGGCTACGTTAAAACAAGTCGGGTC 7516 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 21 46 98.5 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : CAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCA # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1073-614 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCEM010000049.1 Flavobacterium psychrophilum strain 99090 contig00049, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 1072 42 97.6 27 G......................................... ATTGAAAAAAGCATTCTCTCGAATAGT 1003 42 100.0 27 .......................................... ACCGGAAAAAGCACCTCGATTAATAGT 934 42 97.6 27 .A........................................ ACTGAAAAAAGCACTATTTTCAATATC 865 42 100.0 27 .......................................... GCGTGCAAAAGACCCATCTCCAATAGA 796 42 95.2 27 .......................T....A............. GCCTGCAAAAGACCCTTTTCCGATAGT 727 42 97.6 27 ................................G......... TCTTTCAAAAGCAGCATCTCCGATAGA 658 42 81.0 0 T..A..G.T......G.......T..........TT...... | TTG [644] ========== ====== ====== ====== ========================================== =========================== ================== 7 42 95.6 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : ACCTTGATTTGTCATTACTTCTACAAAGTAATTGCCTTTTGCAAAGCTTGAAACATTTATTTCTAAATGATTAGTTGTTTTTATTAACTGCCCTAATGTGTTGTAAAAATTTACTTTTTCTAATTGTAATCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAGCTGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAACCACCAGAAATAGGGCTGAAATTTCTCCAAACCGCGGCTGCCTGATAAACGGCTTGAGTACCAGTAGGAACATTTAAAGCACAGTTTGACTGAGTAACATTACCGAAGACATCTGCATTAATAGCTAAAGGCATTGTAATGTAACATTTTACTGTGGTTAAACGTTTACAATTATAAAAAGCAGCATTTTCAATAG # Right flank : AAGCGCAAAAGCATTCTTTCCGATAGATCTAACGAAATTCCCAACGTTAACCGACGTTAAACCTTGACAGGAAAAAAACGCAGATTCTCCAATAGCAGTCACAATATAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAACAGTATATTTTATACCATTTGCTGTAAAATCTTGCGCTATTCCTAAAAAAGGAATTAAAATAAGAAATAATAATTTTCTCATGTTTTTTGTTTTTAATTATTGTATAATGATTGTTTTTGTTGCCTTACCTTGGTTTGTCATTACTTCTACAAAGTAATTTCCTTTTGCAAAGCTTGAAACGTTTATTTCTGAATGATTAGTTGTTTTTATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTCTAATTGTAAGCCCTCTTGTAAGGCTATGTTTAAAATTTCTGAAG # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.12, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 16-329 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCEM010000088.1 Flavobacterium psychrophilum strain 99090 contig00088, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =============================== ================== 16 38 100.0 31 ...................................... GACTACTATTGGAGATCAGGCTTTTGCAGAT 85 38 100.0 31 ...................................... GACTACTATCGGAAAAGGGTCTTTTGCAGAG 154 38 94.7 31 .............T....A................... AACTACTATTAGAAGGGGTATTTTTGCAGGC 223 38 97.4 31 .............T........................ GACTGATATTGAAAATGGTGCTTTTTTCAGT 292 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== =============================== ================== 5 38 98.4 31 TGTTCTGGTTTAACATCAGTTACAATTCCTAATTCTGT # Left flank : GGTGCTTTTTTCAGTT # Right flank : | # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTCTGGTTTAACATCAGTTACAATTCCTAATTCTGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [15.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 429-112 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCEM010000078.1 Flavobacterium psychrophilum strain 99090 contig00078, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 428 41 100.0 28 ......................................... CTGAAAAAAGCACCATTTTCAATATCAG 359 41 100.0 28 ......................................... TCTGCAAAAGCATTCTCTCGAATAGTAG 290 41 97.6 28 .................................T....... CCGCCAAAAGCACCTCGATTAATAGTAA 221 41 97.6 28 ....................................G.... TCTGCAAAAACATAATCTCCAATAGTAG 152 41 78.0 0 ................G..G..C.........TT.TTG..T | ========== ====== ====== ====== ========================================= ============================ ================== 5 41 94.6 28 TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Left flank : | # Right flank : TTGTATAAAAGCAGATTCTCCAATAGCAGTCACAATATAGTTTTTTGAATTATAAGCTACTGTTTCTGGTATTACCGCAACTCCACTAAAATCAGGGTTTCTAGCTACCTTA # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //