Array 1 982846-984338 **** Predicted by CRISPRDetect 2.4 ***
>NZ_OU015328.1 Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00027951 isolate AUSMDU00027951 chromosome C1, complete sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
982846 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG
982907 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
982968 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
983029 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
983090 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
983151 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
983212 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
983273 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT
983334 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC
983395 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
983456 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC
983517 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA
983578 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA
983639 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT
983700 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA
983761 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC
983823 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA
983884 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG
983945 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT
984006 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA
984067 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
984128 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA
984189 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
984250 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT
984311 28 82.8 0 ...............A.AA....-.G... |
========== ====== ====== ====== ============================= ================================= ==================
25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT
# Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG
# Questionable array : NO Score: 6.17
# Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 1000470-1002434 **** Predicted by CRISPRDetect 2.4 ***
>NZ_OU015328.1 Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00027951 isolate AUSMDU00027951 chromosome C1, complete sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
1000470 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA
1000531 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG
1000592 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC
1000653 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC
1000714 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG
1000775 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT
1000836 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC
1000898 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT
1000959 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA
1001020 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG
1001081 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA
1001142 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA
1001203 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC
1001264 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC
1001325 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
1001386 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
1001447 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG
1001508 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG
1001569 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC
1001630 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA
1001691 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC
1001753 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT
1001814 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [1001856]
1001856 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
1001917 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA
1001978 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA
1002039 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA
1002100 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT
1002161 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC
1002222 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
1002283 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
1002344 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
1002405 29 96.6 0 A............................ | A [1002431]
========== ====== ====== ====== ============================= ================================= ==================
33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT
# Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG
# Questionable array : NO Score: 6.14
# Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//