Array 1 24137-23376 **** Predicted by CRISPRDetect 2.4 ***
>NZ_FZZL01000021.1 Neisseria meningitidis strain Neisseria meningitidis isolate R271, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
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24136 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA
24070 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT
24004 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC
23938 36 100.0 30 .................................... ACTCCCTGTTTATCGGTTTTTCAGCTTAAA
23872 36 100.0 30 .................................... GTCAAGCATACTAAACGATTAATAGCTTAG
23806 36 100.0 30 .................................... ACAAAGCCGCAAATCGTCCGCCGCGTATCA
23740 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA
23674 36 97.2 30 ............T....................... CACCCTGATATTCCGCAACTCGATATACTG
23608 36 97.2 30 ............T....................... GTAAAGTCGGCACAAAGTCTTCAGGTTTCA
23542 36 97.2 30 ............T....................... CATCGCGCTGAACATACCGGCGCAGCCGCA
23476 36 97.2 29 ............T....................... CTTCCGGTATGACATCACGAAGCGGGGCG
23411 36 97.2 0 ............T....................... |
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12 36 98.6 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Left flank : GGAAGCGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCTGAAAGAAGATGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG
# Questionable array : NO Score: 6.07
# Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT]
# Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37
# Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0.68,4.5 Confidence: HIGH]
# Array family : II-C [Matched known repeat from this family],
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