Array 1 4906-5483 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINAU010000001.1 Escherichia fergusonii strain C11-8 c_000000000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4906 29 100.0 32 ............................. GACTAGATTGGCTCCAACGATGGGCGTTTTAT 4967 29 100.0 32 ............................. CACGAGCTGCGGCGCGCTCGGCGGCGGCCACT 5028 29 100.0 32 ............................. TGGCCGAAGCGCATGAGCGTGGAGGTGCAGGC 5089 29 100.0 32 ............................. ATCCATATTCGCGCGCTGGGTAGCGACGATAA 5150 29 100.0 32 ............................. ATCAAAGACGCTCGGGTGTCGTTGATGTATTA 5211 29 100.0 32 ............................. CGTAACGATAAAAACGTCACTCTTACGCAATT 5272 29 100.0 32 ............................. CAATATCCCGCACCCGGAACACTGGTTGAATT 5333 29 96.6 32 .........G................... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 5394 29 89.7 32 .........G......T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 5455 29 72.4 0 ........AG.T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 95.9 32 GAGTTCCCCACGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGCATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCACGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 20443-21631 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINAU010000001.1 Escherichia fergusonii strain C11-8 c_000000000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20443 29 100.0 32 ............................. TCGCCCGAAAAACAGCTTGAATCTTATATCGC 20504 29 100.0 32 ............................. AACGCGCCAACGTTCATTGGGGAAGTGGTATC 20565 29 100.0 33 ............................. GACGGGAAAAAGCTCCCGATCACCATTCCACAG 20627 29 100.0 32 ............................. ACTACCTCAACGGGTGCGTTTGCCAGCATAAA 20688 29 100.0 32 ............................. GCAACAATAATTACTCACGCGTTTGAGCAATG 20749 29 100.0 32 ............................. TTGTATGGCGACATGATTGTAGGCTCAGCACT 20810 29 100.0 32 ............................. GTAAAAAAATCAGCGACATGACGAATGTCATG 20871 29 100.0 32 ............................. GGGATGTACGGAAGTAAGTTAAATGGTTATCG 20932 29 100.0 32 ............................. GCTTCCTCCACCGGAAGAAGTCCGCCATCTCA 20993 29 100.0 32 ............................. ACCGAATAAAAACTTTTTACGTAGGTTCCTGA 21054 29 100.0 32 ............................. ACCGGAGTGATAGACCGTTTGCTCGATGCCGT 21115 29 100.0 32 ............................. AGTTAAAAAAATCCACTGCATATAATGAGATC 21176 29 96.6 32 ...........................T. CGTTTCATTTGCTGTAGAGACGGTTCTTGAGT 21237 29 100.0 32 ............................. AGTGAGCCAGCCTGGATTATTGAGGCGCGTAT 21298 29 100.0 32 ............................. AAACGCCGTGGTGTGCCGCGTTCGCCGGAGCT 21359 29 96.6 32 .............T............... TTGACGATAAACAGTTTGCTACCTTGCTTGAA 21420 29 100.0 32 ............................. CCTGACCAGATGAGAGACTTTAACCCGGAACT 21481 29 100.0 32 ............................. TCGACAATGGATAAGTTGACTTCAGGTCTGGG 21542 29 89.7 32 .A...........T......A........ TGCAGTACGCCTGATGACAAACCAAGCATCGG 21603 28 82.8 0 .A....................-.CT..C | C [21608] ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCCGGTGAAATTGAACCACCACAACCTGCGCCGGATATGTTACCGCCAGCTATCCCGGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCAGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTTGCAATCTGGCTCCTGGAAGTACGTGCCGGTGTTTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTCATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAAATTGTTTAAAAACAGATACGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAAACTCCTCAAGACGCCTTCGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //