Array 1 143021-143651 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSIK010000004.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================ ================================= ==================
143021 28 100.0 32 ............................ CGTGCGTATGCTGCCGCGCGATTCAGTACATC
143081 28 100.0 32 ............................ CGGCGCAGTGGTTTCCATTGGTGGGAAAAATG
143141 28 100.0 32 ............................ GCATCACGTGTGGTGACTGAATACGCGGTCAA
143201 28 100.0 32 ............................ AGAAGGGCGGGCGTCGTGTTGTTAAGCGCGAA
143261 28 100.0 33 ............................ CTGCTCGACCCTGTCATGCGGCGCATCCGGCTC
143322 28 100.0 32 ............................ AGCGGTCGCCAAGGCAATGCTCGTACGCCGTC
143382 28 100.0 32 ............................ ACATCGACCGGGCCTGACCTCCTGCCTCCACC
143442 28 100.0 32 ............................ TGGATTACCGAGGCCCGAAAATATATTGGTGA
143502 28 100.0 32 ............................ AAAAAGTTGCGTCGCGTGACCGGCACTATAGA
143562 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT
143622 28 85.7 0 ....................A...C.CT | T,C [143642,143646]
========== ====== ====== ====== ============================ ================================= ==================
11 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA
# Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA
# Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG
# Questionable array : NO Score: 6.20
# Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0 Confidence: HIGH]
# Array family : I-F [Matched known repeat from this family],
//
Array 2 152708-153635 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSIK010000004.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================ ================================ ==================
152708 28 100.0 32 ............................ AGTTGGAGTATGCGCGTGGGCTTAAAGATCGC
152768 28 100.0 32 ............................ AGCAAAAACCGGATATAGACAATCTCACTAAA
152828 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC
152888 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA
152948 28 100.0 32 ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT
153008 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA
153068 28 100.0 32 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCC
153128 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT
153188 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT
153248 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT
153308 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA
153368 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT
153428 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA
153488 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC
153548 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG
153608 27 92.9 0 .......................-C... | T [153628]
========== ====== ====== ====== ============================ ================================ ==================
16 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA
# Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA
# Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA
# Questionable array : NO Score: 6.24
# Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-F [Matched known repeat from this family],
//