Array 1 735-65 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQME01000481.1 Fischerella thermalis CCMEE 5194 NODE_1874_length_703_cov_10.082503, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================== ================== 734 28 100.0 42 ............................ AAGGTAAAGCAAAGGTTCTACTTGTTTCCTGNNNNNNNNNNT 664 28 100.0 43 ............................ ATACCCCCAATTGTCTCGTGTGTTTCTGCGTGGNNNNNNNNNN 593 28 100.0 43 ............................ CAAGTATCCACTTTCAGTCTCGTCCATAAATAAAGTTGCAACT 522 28 100.0 44 ............................ AAGAGTTTGTACTCCACCCTAATCCTTAACCTGCNNNNNNNNNN 450 28 100.0 42 ............................ TGTCTGTAATTTGTACTAAAACCAAAACCTGANNNNNNNNNN 380 28 100.0 42 ............................ ACACTTGGATGAAAGGGAGGAATGAGAAAGTNNNNNNNNNNT 310 28 100.0 43 ............................ TGGCTTAAAGATTTACCGGAAGAATTAATAGGNNNNNNNNNNT 239 28 100.0 41 ............................ AGAAATAGCTTGACCTGCTGTTACTAACCTNNNNNNNNNNT 170 28 100.0 50 ............................ CTTGCCCAAAGCTGGCGCCTAAGCTTAAGCACACCCGCTCTGTTGCAACT 92 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================== ================== 10 28 100.0 43 TAAATTAATCCCTATTAGGGATTGAAAC # Left flank : | # Right flank : CGATTATCACCTGACTTAAAGTTAAGGTGATTCAAAGTTGCAACTTAAATTAATCCCTATTAGGG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 4887-4352 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQME01000546.1 Fischerella thermalis CCMEE 5194 NODE_2407_length_4856_cov_14.748764, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================== ================== 4886 28 100.0 46 ............................ ATCCATTTAATGATTACCCCCGCTTCAATTCTCAATAGTTGCAACT 4812 28 100.0 47 ............................ GTTATTTTTATGATGAAGATACCAAAACTGGAAAAGCAGTTGCAACT 4737 28 100.0 43 ............................ TTATGGTGGATGGATCCCCGACGTTGTCCGTCGNNNNNNNNNN 4666 28 100.0 42 ............................ TCTTTATTTAGCTCCAAAAAAGATTTATACCNNNNNNNNNNT 4596 28 100.0 44 ............................ GAGTATTTGGGAAAGACGGGAAGAAGATCCCCCGNNNNNNNNNN 4524 28 100.0 47 ............................ ATAAATTTAAAGATGGAAGAGAAGTACGATCCTGCGTAGTTGCAACT 4449 28 100.0 42 ............................ TATCCCCGAGTAAAAAAAAAGCTCCTATTTTTAGTTGCAACT 4379 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =============================================== ================== 8 28 100.0 45 TAAATTAATCCCTATTAGGGATTGAAAC # Left flank : C # Right flank : CTTTTAACTGATCATACTCATCTAACGCCTTNNNNNNNNNNTTAAATTAATCCCTATTAGGGATTGAAACCGATAATAATTTATCTAGCACCCACCCCGCTTCCNNNNNNNNNNAAATTAATCCCTATTAGGGATTGAAACTGGAACTTCCAAAATAATCGACTTCTTTTCGCGCCNNNNNNNNNNTTAAATTAATCCCTATTAGGGATTGAAACAGATTTAATATTTTCGTGCGATCCGGCTTTAACAATTGTTGCAACTTAAATTAATTCCTATTAGGGATTGAAACATCCCTAGTCTAAAAAATTACGTCGAGAACCAAGAACAACCAAAACAATGATTCGCTACGCTCAGTTTTATATTGGTCGCAATTCATCTCCCGTTAACTCTTTCGCCTTATATCCCGCCACTGATTCGGAGTACCGAATTCAGTGGGGGACGAGGGTGCGAAAGAGTTAAACATGAAATGCTCTACAACGCGATCGCCTCTAATACCACCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 611-140 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQME01000116.1 Fischerella thermalis CCMEE 5194 NODE_431_length_21038_cov_18.275692, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 610 37 100.0 40 ..................................... TCTTTTTAAGAGATCTTTATCAAATGTAGAGCCTCCACGC 533 37 100.0 34 ..................................... AATTACATAGACCTGCTAACCATGCATAAGCANN 462 37 78.4 35 NNNNNNNN............................. TTATTGACCATACACGCTCTATTGCAGAGGTTNNN 390 37 81.1 33 NNNNNNN.............................. TGTTGGTGGACTTGATCACACCATTAGCCAAGG 320 37 100.0 36 ..................................... GTATCGCACGAAGTACGGCTGATACTGCCATCGGCA 247 37 100.0 34 ..................................... GATTTCCCTTTGTATAGCTAGGAGGATTAATACT 176 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 94.2 36 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAT # Left flank : GGTGGTGTGGAAGCAACGCCAAAAGTCTGGGATCTAGCCGCTGCTTGGGTAATAGTTAAGGCTGCGGGAGGAAGTTGGATCTCACTCAACTCAGAACCTTTTGCTTTATCTGCTGGTGTTGATTATAGCGATCGCTCTTTCCCCACTTTAGTTGTCAGTCGTCCAGAATTAGTGTCTACATTTAAGCCATATTTGGAAAATTTAAAGATTTGAACTTTGGCGTTCTCCAAGTTGCTTGGTTAACTTTATGGTGCAGATGGGTAGGTGTAGAAATCAGTTAGCCCATAAAAAGTACCTTAATCCCTGTAACAGCAATAGTTTCATCGATTAAGTAGCGAAAATAGGTCTGCACCAATAGCAAAACGCTTACTATACAAAGCTTTCAGGCTGAAATTTTGAGAGGCTCTCTTGTCACCTAATGGCTGAAATGATATTATGATGACAGGTTTGCACCACTGTACCTTGAAAACTAAGTACTGTAAGGGTTTAAGTTTGTAGCG # Right flank : TCGAATTTACAAATACAACAATACTCAATAGAAATTNNNNNNNNNNTCAACTAAAATCCCTATCAGGGATTGAAATGCCTTAGTCGGTGGTACTGGCGATGGTAAGTCAAGTTGAAATCAACTAAAATCCCTATCAGGGA # Questionable array : NO Score: 8.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 392-68 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQME01000574.1 Fischerella thermalis CCMEE 5194 NODE_2778_length_1642_cov_13.560902, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 391 35 100.0 38 ................................... GCCTCCCAATCCGCGGAGAAACATGAGATTGATAAATN 318 35 74.3 33 NNNNNNNNN.......................... CCTGAAAACTCTTGGGATTTATCTTCACCTTGT 250 35 100.0 42 ................................... ATTTTCTAATTTGGCTTGTGCTTTTATTCCTTCGTTTANNNN 173 35 82.9 36 NNNNNN............................. TCATCTTCGTGGTGACCTTTGAAGACAGCTTCACGT 102 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 5 35 91.4 38 TGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CGGTACAGCAGCAAATATTCAACGCACAGACTCAATCAAAGATGGTGTGATTACGAACTCTTGGACGATCGCAACTGGTGATCCTATGGGTAAGCATAAAATAGAAGTTTATATTGGCGATCGCCGTATTGCTACTTTTGAGTTCGAGGTAGTTCCAGCTACTAAACGGCAAAAGCCAGCTCCAAAAGCGTAGTTACAAGTTTTGCTATAGTCGATAAATAAAGATTAATCTCTCTTCAGCTTAGAGTTGGTGCAAACCTGTAGGTGTTTAAAAAAAGCAGTCAAATTTAATGGCTACAAGCCCTACCTGTTATGGCTTTGAACCCTTTTACACTCAGATAGAGGTTTGCACCAATTCTGAAAGTCTTACCAGCAAAGCTTTTGACCTATTTTTTCATAATTCATCTTGACACCTCGATGGCTGAAAAGCTATATTTTGTCCAGGTCTGCACCACTGAACCTTGAAAACCATATACAGCAAAGCTCCTGAATCTAGCAGT # Right flank : CATAGACTACGACCCTACCGCCAATTTTTGATGATAGGTTGCAACTTCAATTAATCCCTATTAGGGAT # Questionable array : NO Score: 8.63 # Score Detail : 1:0, 2:3, 3:3, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 1 1047-799 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQME01000226.1 Fischerella thermalis CCMEE 5194 NODE_826_length_1015_cov_14.178325, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================= ================== 1046 29 100.0 45 ............................. CATTATATAAATATCAAAAGAAAACCAACCGGAGGNNNNNNNNNN 972 29 100.0 44 ............................. CTGGCAAGACTACAAAGAGTATATTAATTTACGTCAAGTTGCAA 899 29 100.0 43 ............................. CTGAGCGCTCGAACAAAATCCGCAAGTCTATCGAGGGTTGCAA 827 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================= ================== 4 29 100.0 44 CTTCAATTAATCCCTATTAGGGATTGAAA # Left flank : | # Right flank : TCCGTAGTATGCATTTGACAAATTAAAGCTTACTGCTTGAGATTAGAACTTAAAGGCGTTGCAGAGAAAGCGGGATGATTTTGTTTTATCTTTTAATTGACAAAAACTCAATCCTTGGCGCTCTTGGCGTCTTGGTGGTTCATTATACCCTGCGGGAAGCCGCTACGCGTCTACATCCTCATTTTATGCAACGCCCTGGCATTAATCCCTATTTGTCCACGTCTTGTAAACTTACACAAAAACAGCCAAGAAAGACGACTATAAAATTTCTTAGTATACTTCAAGTAGACTTGAACTATTAGCTCGCAGTTTACTTGCGGGCTTTCGGGCTTTCAGGCTTGCATATTCAAAAACAAAAAGGTAAGAGAAAAGATTTTTCCCTTACCCAATTCTCATTACCCTTGACACCGAAGCTTTAGTAAGCTCTGCGAGTAAATTGGTAATATAAGAAAATTGCAATAATCGCACCAATCACCGCTACGAACAGACCAGCAAGACTA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAATTAATCCCTATTAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA //