Array 1 23250-21043 **** Predicted by CRISPRDetect 2.4 *** >NC_014533.1 Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 23249 36 100.0 39 .................................... GCCCGGATCTGCTGGCCGATGTCCTCGGTCGCTCGCGCC 23174 36 100.0 39 .................................... GGCGGATCAAGGTAAATGCCAACCTTTTTGTAAACCCCG 23099 36 100.0 35 .................................... CGGAGATTCCATAATCAAAAGCCAGATGATTACTT 23028 36 100.0 38 .................................... ATCAGATTGCAGAAAATTAGAGCATTTGTTAAGAATGC 22954 36 100.0 41 .................................... AACGCGGCGACGGGCGGCACGGCAAAGCGCGCGAAGGAGTT 22877 36 100.0 39 .................................... TTAGCTCTTTGTAACGAGCATCAAAATGTTTTAATTATT 22802 36 100.0 40 .................................... GGATATTGTTGCAAATATCGTATGAATAAGTAAAACGAAA 22726 36 100.0 37 .................................... GTAAGAACTGGCTAAAGTCCTTAAGTCGTTTAAGGAC 22653 36 100.0 37 .................................... GAGAATGGAGACAGGAAGGGCGTTCTAGCGATTCAAT 22580 36 100.0 38 .................................... AATTTTATACCGCCTTCCATCGCTGTCTATTTCCTCCA 22506 36 100.0 41 .................................... TGAGTTTTTCTGCCGTCATTCAACCGCGAATGTAAAGATCG 22429 36 100.0 37 .................................... CTCCGTGAAGATCGCGCGTTCGTTCACGTCGGCGGCG 22356 36 100.0 36 .................................... GATGTTGGACAGGCGGCGGGGAAAGGATTACAGAAA 22284 36 97.2 40 .............T...................... AGAAAAAGAGTACACACTTTTACTCTGGCAAGGCAGAAAG 22208 36 100.0 38 .................................... TAAATAATTTTAAAAAGAATGAATTCCTAGGAGAACCT 22134 36 100.0 38 .................................... CACAAGTAATAATAGGGTGAATTGGCATGGGTGACATA 22060 36 100.0 43 .................................... TACACAAGTGGTGTTCTTAAGGTGGTAGAGGGAAAAAATGCTT 21981 36 100.0 36 .................................... AGAAAAGGAAGAATTGCCATAGTAACAGAGGTACTC 21909 36 100.0 42 .................................... GGGCAACGGGCCGCCGAGCTGGTCCCGGTCACCGTGCGCAAC 21831 36 100.0 37 .................................... TATTCCAGGTAGTTGGGGTGACTGGAGTTCAAACTGC 21758 36 100.0 42 .................................... GTCTATATCAAGTTAACCTGACTCGAAAGCTTATAATTAAGC 21680 36 100.0 40 .................................... TTCGACCCGCCGACCTCCCGCATCACGATGCCGCCATCGG 21604 36 100.0 42 .................................... GTGGTTCGAGATCAGGGACGAGCTGGGGGCGACCGAGTTCCT 21526 36 97.2 38 ...................................C TACGCCCTCTGGATGGAGGAGAAGGGCTTCTCGAACCT 21452 36 100.0 38 .................................... GAGGTCTTTGGCGGAGTCCCCGAACAGCGAGGTGATCG 21378 36 100.0 38 .................................... ATAGTGACTCCAATCCCCACAGAAATTAGAGTAGATTT 21304 36 100.0 38 .................................... CTGCTAACTTAAAGGTATTGCCAGGTGCTGAAAATATA 21230 36 100.0 44 .................................... TTCAGTCATAATATAGATACAAGTGAATGTAAGTAAATAATTGA 21150 36 100.0 36 .................................... CCTATTGAGGACATGAGAAATCGATACCAAATCCTT 21078 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 30 36 99.8 39 GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG # Left flank : TCTATTTTTTGGACAACAAAATTGCAATAGTGATAATGATGGAAATTGACAAAAAATAATGGACATAGATAGGAGATTTTTTTGCTTCTATAACTATTTCTCTTTTTACCATAATAAGGGATATCATTATAATAATAATTATCAGTTTAAGTAGTCGGACATAAGTAAAGTTAACTGTGTTATCAGGGAACAAAGAACAGGAAAGGCTTTTAAGACTTTTACATTTCTTAACATAATGAACTTTATTTATGTCCAGGTACTAGGGTTAAGAGATTAGCCATCAGTATTTTTAGAGAATAATTACTAAATTTACCGCGCTTTGGGAAGAAAGAGACTTAAATTAAGTTTTTCTTCCAAAATTGTTTTTTTGCTTAACATTTCGTCAAATAAATCCAGACTTTAGCTAAAGTTTTGACGATGGGACGTTGTGAAACATTTTTTTCCCCTCCGTTTAAGTAATACAATTTAGGTAATACAACAGTAATACAAAAATACAAATA # Right flank : GGCTGCCCACAGAACCTTTATATCATCTAGCGTCTAGATGCGGTTTGCGAACCTCATCTTAAATTGTACCACAGATCGAGCAAAAACACCCCACCAACAAACCTCAAACCCTTACCGGGCTTAATGTCGACCGACACAACGAAACAATAGGTATTTCAGCAATTTTTTTTCTCAGTCGCAAACCGATGATACAAAACCGCCAAACCCTTCAACCTAGGATTATTATTCACATCATCATATTCACCAAAAAGTCGCTGGATTCATTTAGTAGAAAGTCAGTAATCGGTTTTGCCGCCATTGCCGCATCCTGTGTTTCAATCCCGTTACCAGGATTCATTTTCATTTAGTAGAAAGTAAGTACCTGGACAAAATTAAAGTTAACTGTTTGGTAAGGGAACACCGGATCTGGGAACAGGAAAGGCTTTCAATGCTTTTACATTTCTTAACATAATGAACTTTATTTATGTCCAGGGACTTAAAAACAACGATTCTATGTCCTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 2 46462-44755 **** Predicted by CRISPRDetect 2.4 *** >NC_014533.1 Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 46461 37 100.0 38 ..................................... GATGTTACTGTGCAATCGTTTACAACACAAACTTGCAA 46386 37 100.0 36 ..................................... CTAATAAATTAACGCCACTTTTATTACTAGATGTTA 46313 37 100.0 35 ..................................... AATTTACATCTTAGCCATTCTATAGGAGGATCAGG 46241 37 100.0 34 ..................................... ATTGTATCCGTTGAAACTAGAACACAATCGTTTA 46170 37 100.0 34 ..................................... TCCAGCTTCAAATGGTCCTGAATTTGGATTGCCA 46099 37 100.0 37 ..................................... GACCCTTTAGAGGCTTTTTTAGCCCCATTTCGCGGGG 46025 37 100.0 33 ..................................... TAACAAAATGGTGTAGTTATGCTGCGGATTTGT 45955 37 100.0 37 ..................................... TTAACGGAATACTGTCACGTAGTATTAATTCATCTAT 45881 37 100.0 35 ..................................... TGTTAACAACTTGATATCTAAACTAGAAATAGGTA 45809 37 100.0 35 ..................................... ATAAGTAATCGTCTATCATTTGTTTATAATTGATG 45737 37 100.0 33 ..................................... GAAACTGTTCTTACGAATTTTGAGCTATGAGCG 45667 37 100.0 34 ..................................... ATAATAATTGTGTTACCTTATAGTCAATGTCCGG 45596 37 100.0 35 ..................................... AAATATATTTGTCAAGACAAAGAAGAAGAGTCAAA 45524 37 100.0 37 ..................................... CCGAGAATTTTTGTTTTAACACCTGATCCTCCTATAG 45450 37 100.0 36 ..................................... TTCTAAATTTAATGTTGGTAGTCCTATTGATCCTTC 45377 37 100.0 36 ..................................... ATAGATATTTCGCTGAATTATCTGAATTCTTATTGT 45304 37 100.0 36 ..................................... ACAAAACAAACCAACGGAACCAGATAAGATGCAACA 45231 37 100.0 34 ..................................... GCTATAAGTTAAATGTTAAAACAAAGGACGATAC 45160 37 100.0 35 ..................................... ATAAAGTTCTTCCCATCGAGGACGGTTAATGGAAA 45088 37 100.0 34 ..................................... TAAGACTTCCGTCCATTTTGCCAGGATAATTAGG 45017 37 100.0 36 ..................................... AACGCTAATCGATTGATATTTGTTTCAATATCGACT 44944 37 100.0 37 ..................................... ACTCATTGTTGTCAACAACAGTTTTAAGTTTGCCGTT 44870 37 100.0 42 ..................................... AAAAATTTTCTATTTTTTCAAGCCTTAACAAAGCCCTTTCTA 44791 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 24 37 100.0 36 CTTTCTATTAAATGAATCCTGGAAACGGGATTGAAAC # Left flank : GCGGATTCTAAGGCGGCTAATAAACGTCGTAAACGGTTACATAGTTTGCTTTGCGGTTTTGGCAAATGGACTCAGTATAGCGTCTTTGAGTGTTTTTTGACGAAAATGCAGTTTGTTAAGCTGCAACACCAGATAGAAGATTTAATTAAGCCCGATGAAGATTCGGTGAGAATCTATATTTTAGATGCTGGTGCTGTACAGAAAACAATTACTTATGGTTCGCAAAAACCAAGACAAGAAGAGGTTATTATTTTGTAATATTTGTTTCTTCTTGACTTTGAATCGGTTATCATACAATTTAGATGGTTTTTCGCCGGAGGGTAGCGGGGGCATAATCCCCAGTCCCCGGTAAAAAACTCTAGAACCTTGACAATTCAATATGTACAGGGATTTTAATTGGCTCGGTTTTGAGGAGAAAATAGCGTTTGGAGTCTTGCCAAAATGTTCCCCGCGAAAAACCGTTCTCAAATCCTTCGAGCATAAACCTTTTGCCTGGCAGC # Right flank : TTTCTTTAATATCTCCAACAGAACACAACAAGAATTCACTTTCTATTAAAATTCATAAATAAAGATCTCTACACAGAGATCTTTATTTATGTCCGACTACTTACAAAGCTCAGAAGGTTAATGAACGCAGACTTCAGCTTGTAGAGCCGCAATATTAAAACCACTCGCGCGTCCGTTAAAATGAAATTATTAAAGACAATGCTATAACCAGTGATTGGGATAGGTTCTTTCTTCCGCTAAATTATTAAAGATCACAGCGCACAAGACCATAATTATCGATCCCTCAAAAGCCGGTGTTAGCAAAAATTCCCAGTCGGGTTTGGTCATCATCACGACTAGGGCAACTGCTCCCGAAGGCGGGTGTAAGGTTCCGGTAATTTGCATAATGGCGATAGCCGCAGAAACAGCCATCCCCATCGCCCAAGGAGAAGAACCGAAAAAATGCAAAATGATCAGACTGGCCAAAGCAGCTAAACAATTGCCCCCAATCACATTTCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTATTAAATGAATCCTGGAAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 3 488994-487679 **** Predicted by CRISPRDetect 2.4 *** >NC_014533.1 Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 488993 36 100.0 36 .................................... ACGACCATTGAGCTTAAAGACGAGAGCCACCTGTCC 488921 36 100.0 40 .................................... AAAACGGCTTCCAAATTCTCAAGCGGATCTAAATCTTCTA 488845 36 100.0 46 .................................... CTCCGCGACTAACATTGATTTTGTTGTCTCTGCGATTATTAGGACT 488763 36 100.0 36 .................................... AATTCAGGGGGGATGGATTGAGTATGGCCCATCAAT 488691 36 100.0 42 .................................... AGAAGGATATCAATCTTCGTCTTGTTGTAGATGATGTCACCA 488613 36 100.0 42 .................................... GAGAATCATAACAACAGTTACATGAGGATTAGCTAATAGATT 488535 36 100.0 40 .................................... CACTCTGGTCTGCTTCGTTGTGGGTGGGAGGAATATGCAG 488459 36 100.0 36 .................................... ACCAATAGCTTTAGTTTACTGCACTTTTTTTTAAAA 488387 36 100.0 40 .................................... AGGGATCGTCGTCTTGTTTATACTTTCCTCTAGGAGTGGT 488311 36 100.0 37 .................................... TGGTGATGGATGCTTTATCATTGCTGATTTGGCTCTA 488238 36 100.0 39 .................................... TCCAAGTTAAAGTAGCTCCGCATTTGGCTACATCATAAT 488163 36 100.0 36 .................................... AAGAACAGCAACAAGAAATCGGCGACGCTGTTAGAG 488091 36 100.0 39 .................................... AGGGTTAGTAAACTCTGTGTAAGCCCTCCTGAAAATTAC 488016 36 100.0 36 .................................... AGTTCATAAGCGTTGCAAGCTCGCTTAACATATATT 487944 36 100.0 41 .................................... TTTGATGATTGAATTTTTTAAACCATTAAATTTGTTCTGAA 487867 36 100.0 42 .................................... CCCCTTGATTCCTTTCAAAGAGTTTATCTGTTATGGCAAAAC 487789 36 100.0 39 .................................... CTATCATTGAGGAGCTTGAGATTCAGCCCCCCAAATAGC 487714 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 18 36 100.0 39 CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC # Left flank : GAGCTATTCTTTATTTGGGTACTTATGCGATTTTATGTTATTACTTATGATATTCCTTGCGATCGCAGACGAAAAAAAGTCTCTGATTTATTAGAGGGATATGGTGAACGGGTTCAGTATTCGGTTTTTGAGTGTGTTCTTAATAAAGCTAAGTATGAAAAGTTACGCCAAAGACTCCGCAAGAGAATTAAGGAAGATGAGGATAAAGTACGATTTTATCCGGTTTCGGAACATACGTTTCAACAAGTTGAGGTATGGGGTGGGCCTCCTATTACTAAGGCGGCTGGTTCTACTATTGTCTGAGTTTTGTATCATCGGTTGGCGACTGACTCCAAAAATCCCTGAAATACCTATTGTTTCATTTTCTCGGTCGACTATAAGCCTGGTAAGGGTTTGAGCCTTCTTGAGCGGGCAGTTATTCGGGATCTGTGGTACAATTTAGGGTGTGGTTCGCAAACGGGGTCTAGAAGCCAAATGCTATAAAGGTTCTGTGGGCAGCC # Right flank : AAAGATTTTATGGCTCTTATACACAGTTATCAAAATAAATAGATAGCGGCAATTTTGTTAAATTATGTAACGACAATCGAGTTAAAATAAAACACTGAACTGCTCAAAAGGCCAAAAACTATGACTTTTCCTCTCAGTTGGACACAACTAGAAGCACTCACCAATTTTGAAACAGATCCAATTAACGGTTCCACCAACGCGCAAGCCACTTTGCGGCTTTTTAATCATGACGAATCTGAAGTTCGTGTCACCCTATACCGCGATAATCATGCCTGGTGTCCTTATTGTCAAAAAGTTTGGTTATGGTTAGAAGAAAAACAAATCCCTTACCGCATCAAAAAAATTACCATGTTCTGTTATGGACAAAAAGAGACTTGGTATAAGCGGCTTGTGCCATCGGGAATGCTTCCGGCTCTCGAGTTAGACGGAAAACTGATTACTGAAAGTGATGATATTTTAATCGCTTTAGAGCGTGTTTTTGGCCCCTTAACTCAAAGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 4 841966-841042 **** Predicted by CRISPRDetect 2.4 *** >NC_014533.1 Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 841965 36 100.0 37 .................................... TCTTCCCTTTGTTATTTTTATAGCTTTGGTATTTAGA 841892 36 100.0 37 .................................... TCTTTTATAGGCTTCTTGAACTGTTCGACTGACTTCT 841819 36 100.0 41 .................................... TCACGGAAATTGGTACTTTTTTATCAGATATCAGTAAATTT 841742 36 100.0 38 .................................... GTGAGAACTGTTCCCGAGCTTGGAGTTAAGCCATAAAT 841668 36 100.0 35 .................................... GGATTATTAAAAGGATAATAGGTAATAAATAGAAA 841597 36 100.0 39 .................................... CCTCAAATGGAAAAAGCAATAATTCATTATCCTTCAAAA 841522 36 100.0 39 .................................... GAACATGGAAAAGCTTGATTATTCAGAATTAATTTGTTT 841447 36 100.0 37 .................................... TTGCTTGCGGTCGAATTCTTCGCGTCTGGTTTGATCC 841374 36 100.0 38 .................................... CCGTCAACTGGCGCGATTCGGCCACTACATTTTTTGGC 841300 36 100.0 35 .................................... TTAATTGTTTTCTTCTTTCAGAATCAGTAGTATTT 841229 36 100.0 38 .................................... TCTATATAATTTTTGATCTTTTCCATAACTATATAAAA 841155 36 100.0 42 .................................... TAAATAAAATACTTGTCTTTTTCTTCATTCATTTTTGCACCT 841077 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 13 36 100.0 38 CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC # Left flank : TCAGAGAATAAACCCGAAGATTTTAAAAGTTCTATCAAACTGGTTAAATTATCTCCTTTGGCAAAAATGGCTATTTTACCCTTTGCTAATCCATTTCCAAGTCTCAACAGTACAGGTAAAATTCCTCTAACCCATAAAATTACTGCTGTCACGGCAGCAATAATCACTGTTATGGTATTGATATAACGAAAAATATCTGGAATATATTTAATTTTGTCTATCATAAGAGTAAACAGGGAAGGAATTTATTTATAAATTAATATCATTTTTCATTGTAACATAAGCTACATAAGAATAACTTGCGGCATTAAAGCTGTTTTTGCGAACGATACTGAAAATCGCTGAAACTATCATTCTTTCGTTCTATCGGTCGATGGCTTACCTGGACTGGGTTTGGAGGTTTTTGAGCATCAATTTTTCGCTATGAATCGGGTTATTTTTTTTATCCGTCGCAAATGGGCGGTAGAATGTAGGTAGGGAGAGCCTTCTAGAAGGTAGCC # Right flank : GATAATTCTATACTTGTGAATGCAGTAAATAAATAAATTCTCAAAAAATAGAGTATTATTCTAGTGCCAATAATCGCGTTAACTTGATGGGAGCTATCGTTGATGCCGCTTATGTTCTTAAGAGTTTGCATAGATAAAGAAAAATAAAGATGACTAGACAAAATAAACTGTTTTATTTATCATCATAAAAATACAATAACGTAATGTTCGGATTTTAGTTGAGAATATTTCTTAAGAAAAGTCTTTATTAGTTGCTCTGCAATCTAAAGATTACAAATTTGCCAGTTTTCCGCAAACTTTGATTGACAAATGTAAAGAAGTATTAAAATAAACAAACAAATACTCAAAATAATATGATGTTTTTTAACACAATCCGCGAAAAAAACAAATTATAATCAATAATGATGAGCTTGAATAAATAAATTAAAATGTGAGTAAGTCTTATTGGGAAGCAAAAATTAGGGGAATTATTTACCCTTTCAGTCTAACAAAAATCCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 5 846788-849039 **** Predicted by CRISPRDetect 2.4 *** >NC_014533.1 Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 846788 33 85.7 36 A...-A...-A........................ CATTCAAGTAGAAAAACAGGAACTATGGAAACATTT 846857 35 100.0 34 ................................... CCTTATTATTTGGGGGACGGAAGTAACTTTATGT 846926 35 97.1 38 .........G......................... CTTATGAACAGCTTGCTCAACGTGCTGGTCTGATTTAA 846999 35 100.0 37 ................................... TGGTGCTGAATTAGCCGCATCGTTTTCGGGCGGGATT 847071 35 100.0 35 ................................... GGATGAAAAAATCGAACGAGCATTTGAATTATACA 847141 35 100.0 39 ................................... CCCCTTCAATATGCAGATGTTGAAGTTCAAGGACAGGCT 847215 35 100.0 39 ................................... AACATGGGAAACCTGGCAAGGTTTTGTAGCAATAAGGCT 847289 35 100.0 38 ................................... CAGCGACGAAAAATGGCAAAAACTAGACGAATAAAATG 847362 35 100.0 34 ................................... CGCAATTCCTAGGGATAGCAGTAGCTGTACTATT 847431 35 97.1 37 ......C............................ CTTTAGCGCAGAACTTTGGTTTCAACCAAGGAACAAA 847503 35 100.0 32 ................................... ATATAAACCAATTCACGAGGGCCATTAGAAGA 847570 35 100.0 41 ................................... TTTAAAAATTATCTAATAGACTATGTAGGGAAGGTAAAATC 847646 35 100.0 37 ................................... TTCGGTTAAACACTGAACGTGTCAATCGGGATCTAAC 847718 35 100.0 41 ................................... ACTCCAACTATGAGGAAATAATCTCGCCCTATCTTGAGACA 847794 35 100.0 39 ................................... TCTACTTATTCAACGAGATCTTTGTTGACCCATATCTTC 847868 35 100.0 35 ................................... ATCGTTCAGAAATCTTTTACAATATCAACACAAAC 847938 35 100.0 37 ................................... TTTTATGTATTTTTTGGGGGGGAGGCTGATCTTTGAA 848010 35 100.0 34 ................................... CGTTACTGGTTTTCTCAAGAATCAGTAGATGATG 848079 35 100.0 34 ................................... CAGTGAAGCAGATAAACAGCTTGTTTATCGTCAA 848148 35 100.0 39 ................................... CATCAAAAAGATAGCCAGTTGCTTGAATGGCACGCTAAA 848222 35 100.0 40 ................................... TATCCTGATGTATTTTCTTGCGGGGTGCATTTTCAATGCA 848297 35 100.0 37 ................................... TGTTATAAATACAAACGGACGGGTTACATTTGAAACA 848369 35 100.0 36 ................................... TCGTGGTACCAGTTATAACCCTGCCCGGGTTCAATA 848440 35 100.0 35 ................................... CGGTGACGACGGTATCGATATTATCGATGCTACGC 848510 35 100.0 36 ................................... GAGTATCGAAACGGAGGGATGGCATCAGTCACACAA 848581 35 100.0 35 ................................... CGTTTAATGCAAATTTCCCAAGCTACTGCACCCAG 848651 35 100.0 35 ................................... ACGTACGATAATAGAATCCTCAAATGAGGAGGAAG 848721 35 100.0 36 ................................... TATGCCACTTTACTTCCTGTGGCTGCAAGAAAAACA 848792 35 100.0 34 ................................... ATTTTTCCAAAGTTTCCAAAATGATGCGCAGATA 848861 35 100.0 40 ................................... TATAACACTCCCATAAGAGTGTTGAGTAGTGTCGGTAGCT 848936 35 100.0 34 ................................... TAGTCAAGATGGCAAGTTCACTGTAAATTTCAGA 849005 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 32 35 99.4 37 GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG # Left flank : TCTTCGAGTAACCACCGTTGCACTACCCGATCTCGAACTGCCGGAATTCCGAGTAAACGTTTATCTCCGTTATTTTTGGGCAGATAAAAACCTCTAGCGGGATAAGGTTGATAGATTTCTTCGATTAGTTCCTGTTGCAGTCGAATTAATTCGTCTTTTTTGACTCCAGCAAATAAGTCGGTTGTTATTCCATCAATTCCAGGGGATGGACTCCCTCGACGTACTTGTTCCCAGGCGTAATAGAGTTCATTTAGAGGAAATTGCATAATATTAAGGAAAATTCAGGGTTAATACTCGAAATCAAGTTTGCACTCCTTTGTTTTACGTTGATTCCATCATCGCAAAGAGATATTTGAGTTCATCCCTGAGTTGAAATTTTTTGACCTGAGTTCATACCTGAGTTCGTAACTGAGTTGAGTGGGCTTATTTTTATCTAGGTTTTAGTAATTATTTTTTCAAGTAAAAAAAGGACAAGTTTTTTTACTTATCCTCTAATTTTT # Right flank : GGCCACCTTCTAAAAGGCTTGCCCTGACTTCATTCTACAGCAAAAATTCGTGGGATAGAAAAAAAAGAAAGAATTATCGCTACTTATTCTCAACAAGCCATTAAAGCACACTCCTCAAAACCAGTCAGATATAGCAATACGTGGGATACAACCAAAAAATAAGAGTTTCAGCACTCAACAACTTCCAACGAAAATACAACTAAAAACAAGTATAAATAAGTTCATGCTCAAAAATAACCTAAAAGCGACTTCAAAAGACTAAAATCAAACTTCATCATCTTCCTCTTCAATAAGCTGCCGAGAATAAGCTTCTATCAACTCTTGTAGTTCCTTAAACTCTTCTACCAATTCTAAATCACATTCTTGTGCTACCGTTAAACCCTCTTGACACAATTGCAATGCAGGAGTAATTTGGTCTAAATGTGCCATTAATTCAGCCAAATTATACAAAGTATTAGCCTTTCCTTTTTGATTCCCTTGTTCTTTTTGCAAAGCTAAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 237090-236763 **** Predicted by CRISPRDetect 2.4 *** >NC_014534.1 Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 237089 35 94.3 43 C.C................................ AATTAAATAATAGGGTGTTATATGTGGCTATGCAGTCTGCACA 237011 35 100.0 38 ................................... TGTTTCTAGAAGCCTCTCAAATAGAGGCACTTAATGCT 236938 35 100.0 38 ................................... TTTGCAGGAATATGTTCACACACTGCCAGGAATGGCAA 236865 35 100.0 33 ................................... ATCTGCGTACTCTGAGCGCCACGTAAAAACAGT 236797 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 5 35 98.9 38 GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG # Left flank : TAAATACATCTCTTCGAGTAACCACCGTTGCACTACGCGATCTCGCACTGTGGGAATTCCGAGTAAGCGTTTATCTCCGTTATTTTTGGGCAGATAAAAGCCTCTAGCGGGATAAGGTTGATAGATTTCTTCGATTAGTTCCTGTTGCAGTCGAATTAATTCGTCTTTTTTGACTCCAGCAAATAAGTCGGTTGTTATCCCATCAATTCCAGGGGATGGACTTCCTCGACGTACTTGTTCCCAAGCGTAATAGAGTTCGTTTAGAGGAAATTGCATAGTTTTAAGGAAAATTTAGGGTTAATACTCGAAATCAAGTTTTTGCACTCCTTTGCTTTACGTTGATTCCATCATCGCAAAGGTATATTTGAGTTCATCCCTGAGTTGAAATTTTTTGACCTGAGTTGGTAACTGAGTTCGTAACTGAGTTAAGTGGGCTTATTTTTATCTAGGTTTTAGTAATTATTTTTTCAATTAAAAAAAGGATAAGTTTTTTACTTATC # Right flank : GCTACCTTCTAAAAGGCTTGCTCTGACTTCATTCTACAGCAAAAATTCGTAGGATAGAAAAAAACGAGAAAATTATCGCTATTAATTCTCAACAAGCCCTTAAAGCACACTCCTCAAAACCAGTCAGATAAAGCATTACGTGGGATACAACCAAAAAATAAGAGTTTCAGCGATCAACAACTTCCAACGAAAATACCAATAAAAACAAGTATAAATAAGTTAATGCTCAAAAATCACCTAAAAGCAACTTTCAAAGACTAAAATCAAACTTCATCATCTTTCTCTTCAATAAGTTGCCGAGAATAAGCTTCTATCAACTCTTGTAGTTCTTTGAACTCTTCTACCAATTCTAAATCACATTCTTGTGCTACCGTTAAACCCTCTTGACATAATTGCAATGCAGGAGTAATTTGGTCTAAATGTGCCATTAATTCCGCCAAATTATACAAAGTATTAGCTTTTACTCTTTGATTACCTTGTTCTTTTTGCAAAGCTAAAGC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 241869-242349 **** Predicted by CRISPRDetect 2.4 *** >NC_014534.1 Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 241869 36 100.0 36 .................................... TTCATCTTCTGGTATCTCCTCTATCCTTAGCATCTG 241941 36 100.0 41 .................................... TTATAGTTCCCTCCACTTATTAATGCCATCTCTCCTGTCAA 242018 36 100.0 38 .................................... CCTGACAAGCAAGCAACGATATCTCCTTTGATTGTTTG 242092 36 100.0 38 .................................... TCCACAGAAGAAGGTAAAGTCTTCCTGCGCCCTCTTAT 242166 36 100.0 38 .................................... CCAGTATTCAAATTGGAGGTTCTCTAGCTCCAAAATAA 242240 36 100.0 38 .................................... TCCTTGGCAGAATCTTGGCGGCTTATAGAATCAAAAGT 242314 36 94.4 0 T...............A................... | ========== ====== ====== ====== ==================================== ========================================= ================== 7 36 99.2 38 CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC # Left flank : CGTGTAAACAAACCAGAATCTTTCAATAAATTTGTTAAGATAGATAAATGCTCCCCTTTAGCAAAAATGGCAATGCGACTTTTGGCTAATCCATTTCCAAGTCTCAACAGTACAGGTAAAATACCTCTAACCCATAAAATTATTCCTTTCACAGTAATAATAATTACTATGATGGTGCTGATATAACCAAAAATATCTAAAATATGTTTGATTTTGTTTATCATAATAGTAAACAGGGCAGGAATTTATTTATAAATTAATATAATTTTTCATTGTAACATAAGTTACATAAGAATAACTTGCGGCATTAAAGCTGTTTTTGCGAAGGATACTGAAAATCGCTGAAACCATCATTCTTTCGTTCTATCCGTCGATGGCTTACCCGGACTGGGTTTGGAGGTTTTTGAGCATCAATTTTTCGCTATGAATCGGGTTATTTTTTTTATCCGTCGCAAATGGGCGGTAGAATGTAGGTAGGGAGAGCGTTCTAGAAGGTAGCC # Right flank : CGATAATTCTATATTTGTGAATGCAGTAAATAAATAAATTCTCAAAAAATAGAGTATTATTCTAGTGCCAATAATCCCGTTAACTTGATGGGAGCTATCGTTGATGCCGCTTATGTCCTTAAAAGTTTGCATAGATAAAGAAAAATAAAGATGACTAGACAAGACAAACTGTTTTATTTATCATCATAAAAACGCAATAACGTAATGTTCAGATTTTAGTTGAGGAGATTTGTCAATGAAAGTCTTTATTAGTTGGTCAGGAAAAACCAGTCGTCAAATTGCTGAAAGTTTCAGAGAATTACTTCCTTATATGTTTGAAAGAATACAACCCTTTGCTTCATTTGAAGATATAAAAAAAGGAGAACAAGGAATTCAAAAAATTCTGCAAGAATTGGAAAATAGCAAATTTGGTATTATTTGCCTTACCCAAGAAAGTCTTAATTCTCCTTGGTTGAACTTTGAAGCAGGTGCATTAGCAAAAACCCGTGATAGTCAACTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //