Array 1 36-661 **** Predicted by CRISPRDetect 2.4 *** >NZ_MINB01000036.1 Thermoanaerobacterium thermosaccharolyticum strain GSU5 contig00036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 36 30 96.7 37 .................G............ TGTTTCACTGCATCGTTTTTCATGTCTAAGTATTCAG 103 30 100.0 35 .............................. TAAAAGAGGACAAAGTAGTACCTATTTAGTAAAAA 168 30 100.0 36 .............................. CCAACTTTTGACCTACATAAATTTTATTGGGATCTT 234 30 100.0 38 .............................. AATAAAATTTTTAAATTTTTTGCAACAGTTATACCGTC 302 30 100.0 36 .............................. GGCCTATTTCATGCGGTATTGAGTTTGTAGGCTTTC 368 30 96.7 36 .................G............ ATAAACTTTCATCATTTTCATCATCAGTCCCGCCTG 434 30 96.7 38 .................G............ AAGGTCTACCAATAACCGTGCTTGCAACTAGTCTATGG 502 30 96.7 35 .................G............ GCACAAAAGCAAAATGTGAAGTGTCACTAGCACTT 567 30 100.0 35 .............................. GCAAGTATATAAATGTAGCTGTTAGTTACATCAAG 632 30 86.7 0 .................A.A.G...T.... | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 97.4 36 GTTTTTAGCCTACCTATCAGGAATTGAAAC # Left flank : CTTTATTCTTAAATTGTGGACTTAGATTATCGGAAG # Right flank : CCTAAGTTATAAGTTAATTGGAGGATTTTTATGTTTGAATTCATAAAATTGCAAAGAACAATGTGCTATGGACCTTATCCCGTTTATAATGTGACAATAGATAAAGGCGGCAATGTAAAGTATTATGGGGAAATGTTTGTCTATAAAAGTGGAGAACATCACTGGAGAATAACAGAGAAGAAGGTAAAGCAATTAAATGATGTAATTGAGGACTTTGGCTTTAGATCTTTTGTATATATATCAAGTTGAAGAGAAAAATGAAGAGCCATCAAATAGATATATAGTTATCACTGCTTCAAAAGAAGAAGCCATAGAGCTAGTAGAGAAAGATTGTAATAGGCAAGAATTACTGGAATGGAGTGTAGAGAAGATAGGAATTGCTACAAATCATTATAATTGCTCAGTTATACTTATGGAAAGGTATCTAAAATTGATGAGCGCATTAGATATACTTCATGGTCATACGATAAAAAATCAGTTACACTGCTGGGAATTGAAAT # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATCAGGAATTGAAAC # Alternate repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1-1962 **** Predicted by CRISPRDetect 2.4 *** >NZ_MINB01000051.1 Thermoanaerobacterium thermosaccharolyticum strain GSU5 contig00051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1 30 100.0 36 .............................. CAATATATGGCATATATGGTTTTAATTTTTACCATT 67 30 100.0 40 .............................. TCCAATAAGCTAATTTCTTCTTCTAAGTCTGTAAAAATAT 137 30 100.0 37 .............................. TGAATAGTAGTTTTATTAACTGGATCATAAAAAATCA 204 30 100.0 37 .............................. TTTGAAGTCTTATTTGATTAATAAGACAATATGGTGC 271 30 100.0 36 .............................. ATCCTGATCCTTTTGTAATTGAGTATATTATACCCG 337 30 100.0 36 .............................. ACATTTCTATGAATATATATATCATGATCCATGAAT 403 30 100.0 36 .............................. ATTGAAGCAGATCCAAAGATACGTATAACACATAAA 469 30 100.0 36 .............................. GCTTGTTTAAATAACAGATAATCTGGCGGTATTTGA 535 30 100.0 38 .............................. TTGCAATAACAAAATTTGTACCCATATATCTAATTTCA 603 30 100.0 36 .............................. ACCTTCTTCTTAAAAGTATAAAAGAAGAAGGTTAAA 669 30 100.0 37 .............................. TAACAATTTATATATACGCTCTACTTTATTGGGAGCA 736 30 100.0 36 .............................. TTATGAATAATATCAATTGTATCCATTGCTACACAA 802 29 96.7 37 ......-....................... TATGTATAGAAAACAACAAATTGTTCTCCACCACGCA 868 30 100.0 38 .............................. CATCTTGTTTGATAGATACAATGCCATTTTTCAGATCC 936 30 100.0 36 .............................. TACCTAATGCTTTTTGTTCTCCGACACCCATAGACG 1002 30 100.0 36 .............................. ATATACTTCATCGTTATTATCTTTTTTCTGTTTCAT 1068 30 100.0 38 .............................. TCCCACCAGATGAAACACCAGAAGAAACACTTGCATGG 1136 30 96.7 37 .................A............ CACGAAAAAGAAAAACGGCTGCTGGAATTCATCCGAC 1203 30 100.0 36 .............................. GCACCTGTAGCATTGGAATTGGCACAAGCTTATGCA 1269 30 100.0 36 .............................. AAATCTACCCACGATTCGCCGCTTAGGGCCTCGTGG 1335 30 100.0 36 .............................. CACAGGATATGCGGATTTTCAGGCCAGTATAAACTA 1401 30 100.0 36 .............................. GCTACAATCACAATCAGCTCTTTTTTTCCAGCACAA 1467 30 100.0 36 .............................. AATCGTGAGGGCACAAAAGAGCCAACATTAGCAAAC 1533 30 100.0 36 .............................. ACATACGATACGATAAAAAAATATCTTGTAAGCGGA 1599 30 100.0 36 .............................. GCATTCCCACTTGTCGCTGGTGATTGTACTTTAAGT 1665 30 100.0 36 .............................. ATAAAACCTCTCTACAACATCTTTTGTATATTCCAT 1731 30 100.0 37 .............................. CAGTTGCAATTGATAAGGAAAAGCAAGCAAATGCAGA 1798 30 100.0 37 .............................. TTTATAGCTGATACTGCATTGTCTATTGAACCTTTTG 1865 30 100.0 38 .............................. AATCAGCTAGTGCAGTGCCTAATACATTACTACTTGAA 1933 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 30 30 99.8 37 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : | # Right flank : TCAAGTACATTAGGACCTGCCTTTATATCTGCATTAGTTTTTAGCCTACCTATG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 7583-11 **** Predicted by CRISPRDetect 2.4 *** >NZ_MINB01000046.1 Thermoanaerobacterium thermosaccharolyticum strain GSU5 contig00046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 7582 30 100.0 36 .............................. CCTTTGTCCTCTACCTGAATTATTTCGCCTGTCTCT 7516 30 100.0 37 .............................. ATGCGTGCTAAGATGTGAAGCCATTTTTGTCCGCTAA 7449 30 100.0 37 .............................. TCCCACCAGATGAAACACCAGAAGAAACACTTGCATG 7382 30 100.0 37 .............................. GAAGTCAGAAAAGAAACAATCTTAAATTTAGCCGAAC 7315 30 100.0 38 .............................. AAAATGCAAGAAGCAACCGAGAAAATTAAAGAATTGCA 7247 30 100.0 38 .............................. TGTAATGTATGAGCAAACACCAGTGCAAGTGAGACCGC 7179 30 100.0 37 .............................. CTTGGTAAAACTAATATTCGTAATACGCAAATGCTTG 7112 30 100.0 36 .............................. TTTGATGGCTGTTGCTATATGGTATTTGTGGCGTTG 7046 30 100.0 37 .............................. TTCCTCCTTTAAATAGGATCGGCTATACCTGCCTTAA 6979 30 100.0 37 .............................. CATGCAATACTAGTTTTCCACTTGTATTTTCTACTGC 6912 30 100.0 35 .............................. TTGAGGCATATCGGCTATGCCTCTACTGTGACTTT 6847 30 100.0 37 .............................. CAGGCTGTTTTAAGCTCTCTTTTAACTTCCTCATAGC 6780 30 100.0 36 .............................. ACGGAACTATTGCTTCAGGTCCTGCTTCGCCTACTA 6714 30 100.0 36 .............................. GTCAAAGAAGTACTTGCAAAATACGGATATGAACAT 6648 30 100.0 38 .............................. AAAAAAACATTATCTTTTAGTACGCCTAGCCAGATTAA 6580 30 100.0 35 .............................. AATTTGATTATTCCTTTCAGTTCTAATGCCTTTTC 6515 30 100.0 34 .............................. TCGAAATGCTTACAAATGTTGATTTATTAATTAT 6451 30 100.0 36 .............................. TTGAAGTAAATTCAGCTATAGGAGATGCGAAGGATT 6385 30 100.0 36 .............................. CAAGCATAATATCACCTCTATTCGCCTGGATTAGCA 6319 30 100.0 37 .............................. GAAAAAGCAACCCTAAATTAGCCGAGGATTTGATGGA 6252 30 100.0 36 .............................. ATGCAATAACGGCAGGACAAATAACAGTCACATTAA 6186 30 100.0 38 .............................. ATACTAATCTTGATATATTGTTGAATACTACTTCTGTT 6118 30 100.0 38 .............................. AAAAATGGATATGAAATATAGAGCGCGTACTGTTGGAG 6050 30 100.0 35 .............................. CAAGGTAAAAAGTCTTATTTTGTAGTCGTGGCTTA 5985 30 100.0 36 .............................. AGTTTCATACTGCTGTTTATAGATGGTATCATACTA 5919 30 100.0 38 .............................. AAACTATCCAGTTTTAAACCGGTAGCTGTGATTGTACC 5851 30 100.0 39 .............................. TGCAAAGGAAAATGCACCGTGGCATGATAGAACAAGCCG 5782 30 96.7 38 T............................. CTTCGATTCTGGCGCTCAAAAAACCGGTAGAGTGGCAA 5714 30 100.0 37 .............................. AAAATGCAGGATATGATTTTTGCATAAGATATGTTTC 5647 30 100.0 37 .............................. AAACTTCCTTGTATTGATATGTGCTTCCACTTAACCA 5580 30 100.0 37 .............................. ATACTCATTTCACCTGATACTGTAGCTTGTACTTGAC 5513 30 100.0 36 .............................. TAACAATAACGACGACCAACCAGCAACAGAAAGCGC 5447 30 100.0 36 .............................. AGGTAAAAGTATTCCACGACGGAAAAGAATTTTCTG 5381 30 100.0 37 .............................. GTTTGTCCTCCACTTCAAGCTCTAACATCATACTTGC 5314 30 100.0 38 .............................. ATTTCAAATCTGTATATTGTTGTACTAATGGAATATCA 5246 30 100.0 36 .............................. ATGCACTAAATACACCACTTTCAATATGAAAGTAAT 5180 30 100.0 36 .............................. TTATTTCTATTTGTCAATACTTTTATTCAAAAATTT 5114 30 100.0 36 .............................. TTCAACAACGGCAAATGGTAAAGCAAAAGCTATTAT 5048 30 100.0 40 .............................. ATAAAAATGCTAAATGAGGTGATAAAAATGACTAAAGAAG 4978 30 100.0 37 .............................. TAGATATATATAGAACATACGCTTTTATTGGTGTCGA 4911 30 100.0 35 .............................. AAACATGAAAATAATACCACACGATGATATATGTA 4846 30 100.0 38 .............................. GTAAAAGAAATTAATAAGAAAAATATAAAAATTTCAAA 4778 30 100.0 37 .............................. AGTCATGTATGCAGTCATCAATCGAATCATATAAATC 4711 30 100.0 35 .............................. ATGATTGATGAAAAATACTACACTAAAAACAAGTA 4646 30 100.0 37 .............................. CCTGCATTAGGACATCTAAAATTAAATAAAATAAAAC 4579 30 100.0 37 .............................. CAAACACTTGCGCAAACTATTGCAACTATGCAGTTGG 4512 30 100.0 37 .............................. AAGTTCAGAGAAAAAATAGATCCAAATGCGCTTGAAA 4445 30 100.0 38 .............................. TATGAGGAAGAAACACAAATTTATCATAAGGCAATAAG 4377 30 100.0 38 .............................. GAGCAAAGAGCCTTAACAACAGGTGCAACAAGTGCCGG 4309 30 100.0 36 .............................. TACACTTATTGAATATTTTGGTATGCGCATACCTTG 4243 30 100.0 37 .............................. TATATTGTTCATATTCAGGAATCCCCATTTGATTTAA 4176 30 100.0 36 .............................. TGCCCTGTGTAATGAAGCTTGCATAAGGCTGGTCTA 4110 30 100.0 37 .............................. ACGGTAGTATATACCCTGTGGAACAGGTCTGGGTACC 4043 30 100.0 37 .............................. ACAATTGCTCTATGTCTGTCTAACATATCATCTTCAA 3976 30 100.0 37 .............................. TACCCCCTGTGGCTGTACTACAAGGTTAAGGCCTTGA 3909 30 93.3 38 .................C...........T CTGCTGCTCTTGCAGGTTGAGCGTAAGTGGCGTTTCCG 3841 30 100.0 37 .............................. TGAGCAATTCGCATTTCGTATCTACTTATTGTTTTAC 3774 30 100.0 37 .............................. AGCATCATTACAGACTTATTCATGCTGTGCTAGAAGA 3707 30 100.0 36 .............................. TCTTAGTCAGTATTTTGGAAACTTATACTTAACATA 3641 30 100.0 39 .............................. AGAGAACATAATGTTTTAAGACAAAATAATGAACCATAT 3572 30 100.0 36 .............................. CGGAGAAAGGCTCCCGTTCCGAGGCGGCTACTGGAA 3506 30 100.0 36 .............................. GGAATTGCTCTATTTCATCTTTTACCGCATGCAGGT 3440 30 100.0 38 .............................. TTGAAGATAATATGGTATGCCCGCATTGCAAATATGAG 3372 30 96.7 36 .................C............ TGTGGCAGTATACAGATAAAGAAAATGTACCGGGAA 3306 30 96.7 36 .................C............ CGGGCTAGTAACGTATAAAAATTTATTGAGTTTTAA 3240 30 96.7 36 .................C............ TCTTCTAACGCATACCTGATAGCATCAATGCTGTGA 3174 30 96.7 38 .................C............ ATATCCAAAATAGGCGGTAATTTTGTGTTTATAGATAC 3106 30 96.7 37 .................C............ AACAACAGCTCTCTATGATAAAATCAATCCAAATGGC 3039 30 96.7 36 .................C............ TGTGGCAGTATACAGATAAAGAAAATGTACCGGGAA 2973 30 96.7 34 .................C............ ATATAAGAGGCCCACTCATCTTTTTGGGCCTCTT 2909 30 96.7 37 .................C............ AATACCATTGCAGAGTTGAACGAAACAGTTCAGCCGG 2842 30 96.7 36 .................C............ ATAAAAAAAGAGAATGTATTAAATGGCTGGATTGTT 2776 30 96.7 36 .................C............ AAGCGAAATTGAGTTGGCTTTTTCTTTAATTTAAAC 2710 30 96.7 36 .................C............ AGCTCTTTGTGTAGGAGCTGGCAATCACTTATTTTC 2644 30 96.7 35 .................C............ TAATTAAGCCTCCTAATAAAATATTGCCGTATCGG 2579 30 96.7 36 .................C............ ATCTTTTCTTCTAGTGTTGAAGGGTTTTCCTCCAAC 2513 30 96.7 36 .................C............ TCTTTAGGCACTCTGTCTTTGCATAATTCTATCAAT 2447 30 96.7 38 .................C............ CTATAATAATTTTCTGGTCTGTAATACCACATTTTCTT 2379 30 96.7 38 .................C............ ATTGCAAAATGCAGTATGTGCGGAAAAATGTTTAAAAT 2311 30 96.7 37 .................C............ ATACCAAGATAATCAATTAATTCTTCTGCACTGTCAA 2244 30 96.7 37 .................C............ CAACAAGGGTGTTTACCATCCAAGATTTGTTGGATGG 2177 30 96.7 35 .................C............ GGTAAATCTTCTTCGTTTTCGATGATTGCGTCTTG 2112 30 96.7 36 .................C............ ATATTGCGTCTTTGTCTGGCATACTTTCTATTAGCT 2046 30 96.7 37 .................C............ CAGTAATAAGAAGTTTTAGTACCCCAGGAACATATCC 1979 30 96.7 38 .................C............ TTGCATTACGCAATAATTCTAGACTTAGGATCTAGTGC 1911 30 96.7 39 .................C............ ACCGAATAGAAGGTAACATTGCAGCTCTGAAAAATGCCT 1842 30 96.7 35 .................C............ TTTAACCCAAGATGAAATTAATAAATTAGTTGCAA 1777 30 96.7 37 .................C............ ACCTTTACGAACTGGAAGGTAAAACCGTCAGGCAGCT 1710 30 96.7 36 .................C............ ACTTGTAGATCCTCGTTTCAATCTGGTTCAGCGTGG 1644 30 93.3 38 .................C...........T TATTTATCTATCAATGAAGAATATGACCCATCTACTAA 1576 30 93.3 37 .................C...........T TATTGACGACCTCCGCATTTCCAGCCGCGCAAGGACG 1509 30 93.3 35 .................C...........T ATAATTAATCCTTCAAATTTAAACTTGCCTTCACC 1444 30 93.3 35 .................C...........T CTAAATTCTATGATTGGTTGCTTGATTATTTAGAG 1379 30 93.3 37 .................C...........T TATGTTTTTTATAAATCTATTCTTTTATTGTAGAGCC 1312 30 93.3 36 .................C...........T TAGATGATGCACATATAAAGCCTCTCATCTCGTCAT 1246 30 93.3 38 .................C...........T TATCAATTTTTACTGTCAAAACACCTTCTTTACTTAAA 1178 30 93.3 38 .................C...........T ATTCATTGCAATTCAAAACCGATAAATTTTTAATTCCA 1110 30 93.3 39 .................C...........T TAGAATCCTCTGCAATTCTCCTCCACTACTACATATTTA 1041 30 93.3 36 .................C...........T ATCGGGTGATGTATTTCATAGTTAATACCTTGTAAA 975 30 93.3 38 .................C...........T TATCCAAGATTTTAAGGAGGATAAATGATGAGAGATAG 907 30 93.3 39 .................C...........T AAATATTGGATATGTCTTTTTGCGTTCTTCTATCGTCGT 838 30 93.3 38 .................C...........T ATAAAAAATATTGCAATACGCATGGACTTGTTGTATAA 770 30 96.7 37 .................C............ TTTTTGTGGCGTCCCCCACCTGACTGGCTTTCCCTTG 703 30 96.7 36 .................C............ CCTCCTCTCAAGAACTTGATATCCTATTGTACACCT 637 30 96.7 36 .................C............ TACAACTATGGACAGCTTGAAGCGATAAGACAAGCA 571 30 96.7 36 .................C............ TACCAAAATGGATAAAGAACCACCTTGGGCAAGTAA 505 30 93.3 36 .................C...........T TCAAATTGCCTTTCCCCTTAATCCTTCCGCCTCTCT 439 30 93.3 36 .................C...........T TGTCAATAGTTTATGCAAAAAATTATTATTTTTTAT 373 30 93.3 37 .................C...........T AAGCATGATAACTTTTCCCGCTTCCAACACTACCAGT 306 30 93.3 37 .................C...........T TCTTGTGGTGTTGATGTAGCAGCTATATTGCTGGTAT 239 30 93.3 37 .................C...........T TCTCCAGTGCTTTCCGCTATATCTTTTATAATTGCAA 172 30 96.7 36 .................C............ ACGACATGAACATTGATTTTAGGCTAGTACCTGCGT 106 30 96.7 36 .................C............ CAGAATTGAAAAAGGCTGCCACAATAGATGTGGCAG 40 30 96.7 0 .................C............ | ========== ====== ====== ====== ============================== ======================================== ================== 114 30 97.9 37 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : AT # Right flank : CACTTTATTCT # Questionable array : NO Score: 8.94 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : GTTTTTAGCCTACCTATCAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [13.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2725-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_MINB01000006.1 Thermoanaerobacterium thermosaccharolyticum strain GSU5 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2724 30 100.0 36 .............................. ATACTTACTTCATTCGCAAAGGCGACAGTTTAAAAA 2658 30 100.0 35 .............................. CTGGTGATGAAAATGGAAAATATAGAAACAGAAGC 2593 30 100.0 34 .............................. GCTCTGCAATTGCTCTTGAGTATTTGATAGGTGC 2529 30 100.0 36 .............................. ACTCAAAAGCGAGTATAATAATAAGTGTAGAGCGAA 2463 30 100.0 36 .............................. TCCCATCTGTCTTCTGTAATCTTGCCATCTTTAACT 2397 30 100.0 36 .............................. CGTTCATCTTCCCTGCTAGTATCTGATTCCCTACAC 2331 30 100.0 38 .............................. CTTGTGGAACACAAACGAAGGATTTAGAAATGCTGTTA 2263 30 100.0 37 .............................. ACGTAAATGTTAACGGTCCTGTGCCTTGGAAATCTGC 2196 30 100.0 38 .............................. ACCTTTTTCAAGTGCTCTGCTTCAATAAAAACTGTTCC 2128 30 100.0 35 .............................. GTTGCAATTTTCTGCCAGTCAGTACATCGCCAGCA 2063 30 100.0 37 .............................. TCTCATTAAATGCAGCTGTCAATTGACCGTCCCAGGT 1996 30 100.0 39 .............................. ACACATTTGCCATATAAGAGAATATTTGTATATGCCCTC 1927 30 100.0 37 .............................. CAACGCGTCAATTTACCATTCAAGACTTGTTTGATGG 1860 30 100.0 35 .............................. TAACAATGTTTGCGAATGGTATCAATAGCACAGCA 1795 30 100.0 35 .............................. CTCCATTTCTTGTATTTTTGAGCTGCGCTATCCAA 1730 30 100.0 37 .............................. ATTTCTCCATAAGGCGGAAGGGGGTATATCTTATGCC 1663 30 100.0 36 .............................. TAAGACATTTTATATAAATCAAGATTATGATTGTAA 1597 30 100.0 37 .............................. TTTTGTAATTTCCTTCTGAAAGCATTCTCTCTCTATG 1530 30 100.0 36 .............................. TATTGATTGAATCTTTTTCTACTGCATTAACAATGA 1464 30 100.0 33 .............................. TTTTTTGTAGAAAATTTTATTAAGTCTTTTTGG 1401 30 100.0 35 .............................. TCTATTGAAGCCACTGCATTTATGACAGGCGTTTG 1336 30 100.0 37 .............................. CCAAACATATACTATAATGAAATCAGAACGAAGTTAG 1269 30 100.0 36 .............................. TTTCCAATGTGTCAGTTCCAATACTGTTAAAACTTT 1203 30 100.0 38 .............................. TCCTCTGAATATCTGCATATTTTGCCCCATCAATCGCG 1135 30 100.0 37 .............................. ATTTATAATCCAAATGCGCAGGCTTTACTTCCTCAAG 1068 30 100.0 39 .............................. ACGTAACTCCTCCTGACTTGATGGCATATCTTCCACCGG 999 30 100.0 36 .............................. CCTGCTTTGAATGACAACATGAGCGAAGCATACAGC 933 30 100.0 36 .............................. CCTGGAATTCCAACAGCTGAAATAATTTCTGTCTGT 867 30 100.0 37 .............................. GAAAAAATTTCAGGCCAAGCTGCGGATTGGCTGTTAA 800 30 100.0 36 .............................. AACAGATCATAAAGTAGGTGGAAATATACAACTGAA 734 30 100.0 36 .............................. TTTGCCATCTTCCCAATATATTGCCAAAAATTCAGC 668 30 100.0 36 .............................. ACTATTATACTTCCTCAGTGACATGGAATGTAAGCG 602 30 100.0 36 .............................. TTGCAGTACATATCAAGCTTTTTCTTAAATATTGCA 536 30 100.0 38 .............................. TTTGATAAAACTAAAGAAGATAAGTTTTGGGAACAGCA 468 30 100.0 36 .............................. GACAAAGTCATAGACGGCGCAATAGAGGCATCTGTC 402 30 100.0 36 .............................. CAGCGTCAAGCAATACAACTAAAAGTAATACAACAT 336 30 100.0 37 .............................. TATTAATATTCTTAGTTGTATCAAATGCAGATGCAAC 269 30 100.0 38 .............................. TCTTGCCTCATCATAAGTAAATTACTATTTTCATCTTC 201 30 100.0 36 .............................. ATAGATGAAGAAGAACAAGCTGAAAGGCTGAAACAG 135 30 100.0 37 .............................. TATCCAGCCTTCTTATATGCTTCAGTTGCATTTCCAG 68 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 41 30 100.0 36 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : CAGCCTAAGAGTAATATTTTTGTAGGGAAGGTTCCTCCCGAAGTTACGCCTATGGAGATTGTGTAAGACCTGCTGTGAATAACAGCAGGCAATGGTCTATGAAGTAGGAAGCTCCAGCCTCTATAGGATGGAGTAGGTTCACAAAGCCGTATACGGTGTAATGAAATAGGATAGAACTGTCATAGGAAGGTTATTTGTAAATCAGAAACCAATTCGTGAACAAAAATAAAAAACAACATAGATAATAAAAGTGAAATAGTATAAAGAGGAATTTGAAGAATTATGTAGAATATATTTATATAAAGTTGTTGTATTAAGTAATAATTTGTCGTCTACCTTAAATAGTGCAAAAAGTGCTGGGCATCGACGACATTTTAAATATTTATCCTTTAAGTTTTTATCAAAAGAGATGGGCATTTGCGGTATTATCAAGTGTGATAGCTTGACATGATCTTTGTTCTTTGCATAAAGAGAATGGCTTTGTAGAAGGATGTGAACGA # Right flank : CGATATAGATACAGTTAGGGTTGCTGTTGATACTCTTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 12-1705 **** Predicted by CRISPRDetect 2.4 *** >NZ_MINB01000054.1 Thermoanaerobacterium thermosaccharolyticum strain GSU5 contig00054, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 12 30 100.0 36 .............................. CCATTTTGGAGAGGAGAGAAAAAACAAGGAGGTGAA 78 30 100.0 37 .............................. TATGAACTCCGTCTACCATATCTGCATTAAGATTTGG 145 30 100.0 36 .............................. GAGAATACCTTATGAATCCGCCAAAACCACCATTCG 211 30 100.0 37 .............................. TAAGCAGGTTGCAATATTTTTAATTGCTCGTTCACAT 278 30 100.0 37 .............................. TAGAATTGTTCTTAATTGGATTAAGATGTTGGGAGAG 345 30 100.0 37 .............................. TCAAAAGTAAAATCCCCATAAGTTTATCACAGGCTAA 412 30 100.0 36 .............................. CAAATGCGTTTACCTTTGCTACTGCATCATTGTCAA 478 30 100.0 37 .............................. GAAGATAAAGAGCACTATGAGAATTGGGGCACTGAAG 545 30 100.0 36 .............................. TCTTACAGCACGAATTATTGACATCAATTTCCTAAC 611 30 100.0 35 .............................. TTATGATAATGTAATGCATAGAGCTGGATTAATCA 676 30 100.0 35 .............................. GAATATTTTTAATATAAAAACTTTAATTTTTTAAA 741 30 100.0 37 .............................. ATTGACCGTCCCAGGTAACATAACCTGGAGGTTGTTC 808 30 100.0 37 .............................. TCCTTTCTTGAATTTGCTCATCTGTCAAATACATACT 875 30 100.0 35 .............................. AGATATATTTCTTTCTCTAACCAGTATAAATCCTC 940 30 100.0 39 .............................. TTATTTTCTACAGCATGTCCGTCTGTCACTGCTGGCGAA 1009 30 100.0 38 .............................. TCGGCTGTGAAGGCTGTGCGAGAAAAGATTATTACAAC 1077 30 100.0 39 .............................. GACGTGGTGAGACTTCTGTTGTAGGTCAAAATCAAACGA 1146 30 100.0 37 .............................. ATGATATCGCAGTAGCGCTTAAAATCCTAAATTACAA 1213 30 100.0 37 .............................. CTGTATTCTTCTGCGGTCTCTTGTTTTTCTTTTAAAA 1280 30 100.0 36 .............................. CCAGAATCTTTAAAATTAGCCGATAAAATAGGATAT 1346 30 100.0 34 .............................. AAGTTTGTTACCTCTTTATTGTCTGCCTTACAAT 1410 30 100.0 37 .............................. TTTTCTACCACTTAGAAATCCGTCGCAACAGTCGCAG 1477 30 100.0 37 .............................. ACAAGGTAAGTGCTGGATATGCGAAAATTATAGCCTA 1544 30 100.0 36 .............................. ACAAAAAAGCAAGGAGTAACAACACAGCAATTAAAA 1610 30 100.0 36 .............................. GGCGTTGCAACTGTCACACCTGCTATTTGCATTAGT 1676 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 26 30 100.0 37 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : TATCTGCATTAG # Right flank : AAGGCATTCCAGTAAGTACAGACCAACCGCTGGCATTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1111-16 **** Predicted by CRISPRDetect 2.4 *** >NZ_MINB01000061.1 Thermoanaerobacterium thermosaccharolyticum strain GSU5 contig00061, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1110 30 100.0 37 .............................. CTCTCTAAAACTTGTTCGCCGCTACGTCTCTGTATTT 1043 30 100.0 37 .............................. AATGTTTGCTCAATTATTCATAAAGCAATGAATTTCG 976 30 100.0 35 .............................. TTTTCTTTGTCTTGCAAGAATTCTGGCAAATCTTC 911 30 100.0 36 .............................. CAAGGTAACCGAGATAGATTTAATCAATTAGCACTT 845 30 100.0 35 .............................. ATTCTTTGCGATTTATTACTTCTATCTCATATTTT 780 30 100.0 36 .............................. AAAACGCCATTTGAGACATCAGACTTGACACAAGCA 714 30 100.0 38 .............................. AGTTTTGCAGGTGGTATGGCAATATGGGACGGCATAAA 646 30 100.0 39 .............................. AAGATAATCTCTGAACAGACAGGCAAATCTATGGCAGAG 577 30 100.0 38 .............................. ATCAGAAATGTTTCTTTAAAACTCTCTCTAAATTCTTC 509 30 100.0 37 .............................. GTCGATATAGACAAAATCAAAGTATCCAATCGTATCA 442 30 100.0 37 .............................. GCGTTGTAGATTGCCTGAAAAATCTTGCTTTGCAATA 375 30 100.0 36 .............................. TTTAGTATTCCAGATTGGCCTTCATTATTATGCTTA 309 30 100.0 36 .............................. TTTCTTGCCTCTTAGAAATCCGTCGCAACAAAGCCA 243 30 100.0 37 .............................. TACTGACCCTTTTATGGACCAATCTATCAATATTACA 176 30 100.0 39 .............................. TATGTATGAAAAAGTATTTGATATGATTAAGCTTGATAT 107 30 100.0 32 .............................. CCCATACGACATTGGAATAAATCAGCTAAGTA 45 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 17 30 100.0 37 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : AACAAAATTGTTTAAAAAGCGGGGGAGGGGGAGAAGGAT # Right flank : CTACACCAATGCAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 85606-83377 **** Predicted by CRISPRDetect 2.4 *** >NZ_MINB01000008.1 Thermoanaerobacterium thermosaccharolyticum strain GSU5 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 85605 30 100.0 36 .............................. TTTTACTTTTGCCTGTAAATGCTGTTGGTTTTAAGA 85539 30 100.0 38 .............................. CGTTATATAGCGGTTTTGGCTGTGTTTTTAATAGTTCC 85471 30 100.0 36 .............................. TACCCAATGATATGTAAATCTATCCCTAATATCTTC 85405 30 100.0 37 .............................. TCTGTTATTTCTAAAAATTTTTATCGCAGGATAATTG 85338 30 100.0 38 .............................. TACGTAAAACACCTCGCTACAAAAAGTCTGTTCGCTAA 85270 30 100.0 40 .............................. ACTATATAACTATTAGGTATTGTCTTCGTTACTTCTCTGG 85200 30 100.0 36 .............................. AAGAAACTGAAGAACGGATGAAGAAAAATCAGATTT 85134 30 100.0 37 .............................. TCTATTAGGAAAGGAGGCGACGGTGTGGATTGGATAA 85067 30 100.0 35 .............................. TTTTGTTTTCGCTTTTTAAAAAGTTAATAGCTTGA 85002 30 100.0 35 .............................. TAACAAACAATATCAGCAGTACCACCGTCAGTAAC 84937 30 100.0 36 .............................. GTAGAAGAAATAGAATTACCAGCAGCGTCATAATAA 84871 30 100.0 36 .............................. ACAAATTGGGTATTAAGATTTATTTCAGCTATGAAG 84805 30 100.0 38 .............................. ACAGTTACGCATTTTGCACGCCCTATACACACATTGAC 84737 30 100.0 37 .............................. ATCCTTGGAATGTTATTAGCACTGAAAAGAAGTTTTG 84670 30 100.0 35 .............................. AAAATAAACCGGGTTGGAAATTTTCAAGCTTGTTA 84605 30 100.0 38 .............................. TGCGATTGATGTTGTAAGCGGGAAAGAGATAACAACAA 84537 30 100.0 36 .............................. GCTGAGAATATCGAGCAAAACAGAACACTTGAAGGT 84471 30 100.0 37 .............................. CGAAGGCGAAATAAGAGCTTATGGCGATACGGTGAAA 84404 30 100.0 36 .............................. AATACCCCGAAGGGCAAGACGAAGCTGCAAACCAAA 84338 30 100.0 35 .............................. TAAATGAAGTCTTCGTGGTCTTCTAACCCTTGTAA 84273 30 100.0 36 .............................. ATTGGTCTATAGATGCAAAAGCTGACACAGCAGATA 84207 30 100.0 36 .............................. CTAGCAATTCTAAAAAAATAACCGTTATAATGTGGT 84141 30 96.7 35 .......T...................... CCAGCGTCTATCATAGTATCAAATTCATCTTTTGT 84076 30 100.0 38 .............................. CTCTCAAAGTCGCTTTTTTTCAAGGCACTGGGGGGTCA 84008 30 100.0 36 .............................. AAATATACAGACAAAATAGTTGTATACTTTGTAAAG 83942 30 100.0 35 .............................. CTATTTACCCAAAATAAACATAGCTCTTGGGAATA 83877 30 100.0 36 .............................. TAAAATATCCCGCCCAAATAAGCTCGTTTTCTAATA 83811 30 100.0 36 .............................. ATTTTGATACTTATTTCGCTTACTAATTTTATAGAT 83745 30 100.0 38 .............................. TATCTATTTGTGAATAAACCATACCTTTCAGCGTCACT 83677 30 100.0 38 .............................. CGGGTACTCAAGAAGGGTTAAAAGACAGTTTAAATGGA 83609 30 100.0 38 .............................. AAGATCAGCTTGATTATGCTTTGTCTATGGCTCAACAA 83541 30 100.0 36 .............................. AAAGCCGGAAGATGTGGATCATCAATTTCCAACACC 83475 30 100.0 39 .............................. TAATGTGCCAGCGAATACAATAACGATATTGCCTGTGTC 83406 30 86.7 0 .....................G.....TGA | ========== ====== ====== ====== ============================== ======================================== ================== 34 30 99.5 37 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : ACCTATGAGGAATTGAAACTACACCAATGCAATTTATTTACGAAGCAGCAAAAAGAC # Right flank : TTTAATATATTTTTGGCTATATGTTGTCTGCTTATGGATAAAAATTTTTGACATTATATAGATTGTATGTTAAAGGTGGTAAGTATAATGGAAAAGATTAAGATAAAAGTGGAGACAGTGACTCCTCTCTATACAGGTAATGCTTTTGGGAATATGAGCGAAATAGAACCACAGTCTATAATAGGGTCACTAAGATTTTGGTTTGAAACTTATTTGAAGGCAGCTAAAAAGCTAGATATTAATTATGATTATAAAAGTGAAGAATTTAATGCAAAAAATTATAAGGAACATATTCTACAATTTATAAGTGATGGAATATCTTTGAAAAGTGCAAAAATAAAGTCAATGAGTAAGTTACAGTTGCCTTCATTGATTTTTGGGTGTAATGGCTTAAAAGGATTGATAGAAATAGATAAAATTAATTTTAATAGTGCTAATATTGGTAATACTTTAAACTTGCCTTTTGCAATTTATAAAAAGAAAAGTGAGCAAAACTTTAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 6649-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_MINB01000010.1 Thermoanaerobacterium thermosaccharolyticum strain GSU5 contig00010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 6648 30 100.0 38 .............................. TTTGACGTGTGCAATTTTTTGGAATAAAGGACAGGAAG 6580 30 100.0 37 .............................. TGAAGCGAAAAATGAGTGCCAATACAAAATAGTCAAA 6513 30 100.0 37 .............................. ACCACATCAAGGACCGGTGAAGGCAAAGCATACGACC 6446 30 100.0 37 .............................. TTGAAGATCTCACATATTTTTTTTATATCGCTTTCTG 6379 30 100.0 37 .............................. CCATCCAGGAATTGTTGGATGGTAAATTGACCGATAA 6312 30 100.0 36 .............................. GTGGATATTTTGCTATGTCGTGATTTGTAAACGTTG 6246 30 100.0 35 .............................. CAGTTGCACCCCAGCCGTAATACGTAGCCGATACA 6181 30 100.0 37 .............................. TTGAGTTTGTTACCGTCGATATGATGTACTATTTCTG 6114 30 100.0 36 .............................. TTCACCGGAAGCTACCAAGTGACAGCATATGGCTAC 6048 30 100.0 36 .............................. TCTACAAGCTGTATTTTGTGTCCTAAGCCAAAGAAT 5982 30 100.0 38 .............................. TCGCTTGATATACTGCTTGTGCTATACCATCATTAAAA 5914 30 100.0 35 .............................. TTGTATCAAAGACTTGGTCAACTTTGACTACTGTA 5849 30 100.0 37 .............................. TCATCCGCAACCATATCAATCCGTCAATTGGCGCTTT 5782 30 100.0 36 .............................. CATAACATCTAATTATCCTTTCCATTTTCATTCCTC 5716 30 100.0 37 .............................. CTATGTCGTCGTTCAAGTATGTTTCATGAATTGACGT 5649 30 100.0 37 .............................. CAGCAGACCAAGTAATGCCAACTATAAAGATGCTAGG 5582 30 100.0 36 .............................. ATTCCTCCTACTCTTTTGGCATCTCATAACAGTTGT 5516 30 100.0 37 .............................. ACATAATGGGGCGGTGATATAATATGGCAATAGCAGG 5449 30 100.0 37 .............................. CTATCTATTTCAATTGCAGTACCAGCACCATGTGATA 5382 30 100.0 37 .............................. TGAATAAAGTAAAATTGAAAGGTGTAAAAAATGGATC 5315 30 100.0 38 .............................. TGGTATATATGGTTAAAAGATCTAGTTTAGAAGTGTTG 5247 30 100.0 37 .............................. TTTAATTTTGTTGTTGGTGTATATATTTGTAAACTGT 5180 30 100.0 36 .............................. CCACATACATCAAAATTTTCTTTGTTATGCCATTTA 5114 30 100.0 38 .............................. AGAGTAACTACATTATCATTAATAGAACTTAAAATAGA 5046 30 100.0 37 .............................. CCACCAAAATAATTCAACCTCAACAACATTATTACCC 4979 30 100.0 36 .............................. TTCCAAACGACCGCCAAACACCCGTATACTTTGCAA 4913 30 100.0 35 .............................. TGAATCAGGCATAATTATACAAAAGAAAACGGAGA 4848 30 100.0 37 .............................. ACAAATTGGGTATTAAGATTTATTTCAGCTATGAAGA 4781 30 100.0 38 .............................. CAGGCAATGCAATTGGAGATATTGCAAAGAATCAAAAT 4713 30 100.0 37 .............................. AAATATTTGATAAATTATGTTTAGGTTATAGTGAAGA 4646 30 100.0 37 .............................. TTTGCTGTTGCATTTGTTGAAACTGATTGTTTATTTG 4579 30 100.0 37 .............................. TCATATAGAAAAAATATAGATGTAGATGATTTAAAGA 4512 30 100.0 38 .............................. TGCAAATTTGAAGTTGTATCAGGCACTAATGAAAACAA 4444 30 100.0 36 .............................. ATTTCTTCTATTGATGCATAAATTTCAGAGATAACA 4378 30 100.0 35 .............................. TTAGATGGGAACTCGTCGAGAGTTAGTGACTCGGC 4313 30 100.0 37 .............................. TTGAGCCAATACCAATTCGGCTGGTGGGGAAGTCAAA 4246 30 100.0 37 .............................. CGCCAGAGCTCGACAAAGTTATTGATGGTGCAATAGA 4179 30 100.0 36 .............................. TCTGATAATTTTCTTTGTTTTGAGCGTATATATGAA 4113 30 100.0 38 .............................. CTCCAATGGAATATCTATCTCAAGGTTGGGCTTTACAG 4045 30 100.0 38 .............................. AAAGATTTAAAAGACGATTTAGAATTCAGATATAACGA 3977 30 100.0 37 .............................. CTGAATTCTGGTTAAAAGTTACATTTAATAACATTAC 3910 30 100.0 35 .............................. TAGATGTGTTTTGCTACTTCTGTTTTTCTTCTCTT 3845 30 100.0 38 .............................. AATCGCCTGTGTCTATTGGTGCTTGTCTGCTGGATTTA 3777 30 100.0 36 .............................. GTTCTCCAACAACTGTTAATTTAGGCTATAGACCTC 3711 30 100.0 36 .............................. ATAGCTTGATTTTCTGTAATGTCAAATATGTTAGCA 3645 30 100.0 39 .............................. TGGAGCTTGTTGACGAAAAGTATAATGATTGTTTTGTAG 3576 30 100.0 35 .............................. CAAGACCTCGAATTTTTGAAAACTTTTCTTTAAAA 3511 30 100.0 36 .............................. TGGCATACCATAACCAGCATATGCGTAACCATTATA 3445 30 100.0 36 .............................. TATCCGCTTCTCTCTGTTTTATGTCCATTAAAACGT 3379 30 100.0 35 .............................. TTTATCAATCCCAGTTGTTGTGAGATCCAATATTC 3314 30 100.0 37 .............................. TATTTCCTTCGCCTCGATCATCGATTGAATTATTAAG 3247 30 100.0 38 .............................. TTAAGTTTGTCAGATTGACAAATATCCTCATCAATTAT 3179 30 100.0 35 .............................. GACTTCAAGGCTAAAAAATCAAACAAAGTTATTGG 3114 30 100.0 34 .............................. TCCCCCTGTTTTATGTTTTTCATATTCCCATACA 3050 30 100.0 38 .............................. CCCATTTTAAGCCTCCTATATAACTTTTAGCATTGTGA 2982 30 100.0 36 .............................. TAAGCATAGAATTTTTTACATCCTTTGTTCTAAATG 2916 30 100.0 35 .............................. ATTGAAGCAGATCCAAAGATACGTATAACACATAA 2851 30 100.0 37 .............................. ACACAAAGACCTAAAACAGTTCCGCTTGTAACAATGA 2784 30 100.0 39 .............................. TAAAATGCAATATAGCTGTTTTCAATATTTCAACATCTC 2715 30 100.0 38 .............................. ATTTGTCGTGAATGTGGCGAATTAGTACCAGAGGATGA 2647 30 100.0 38 .............................. ATAATATAACACATCCTGTAAAAAAGCAATATGAAAAT 2579 30 100.0 36 .............................. GAAGATGTATATGTGTTTTGCGATGAATTTACTAAT 2513 30 100.0 35 .............................. AAGAAATTACCACGAATTGCTTTGCAATATGGGGG 2448 30 100.0 37 .............................. TCAAAAAGTGTTTTTTCTATATCTTTATAACTATATC 2381 30 100.0 38 .............................. AAATGTAGATTTTATTCGATGAGTCTACTTTTGTAGAA 2313 30 100.0 36 .............................. ACAGTTTTGGTTCCTGAACCTGCATAATATGCTACA 2247 30 100.0 39 .............................. TATTTCCCAGTTTTCCCACTCAGCGTTGAATATATCGCT 2178 30 100.0 36 .............................. ATGCGATTGCAGATTCTAAAATACACATAATAGCGA 2112 30 100.0 37 .............................. ATCATCTCACTTGCTGTCAGTGCTATTCTTTCACCCT 2045 30 100.0 36 .............................. CTTCATAAAAAATAAGAGAAATACAAGAATAAAACC 1979 30 100.0 37 .............................. AATGAAAACTTCTTTGAAAAAGAAGAAATAAAAGTGC 1912 30 100.0 37 .............................. GATAGCCAAAACAAAAAGATTGATATATTGCTTTTGT 1845 30 100.0 38 .............................. TGTCTTTTTCTTTAAGTCCGTTTCCCACTGCTCCGCTG 1777 30 100.0 39 .............................. GCAATGACAGTAAAGGAAACAGCCAAAAAGCTTGGAATT 1708 30 100.0 38 .............................. CTTCTTTCCATTCAAACTGCCCGTATCCGCCATTACGC 1640 30 100.0 37 .............................. TCACAATATAAAAATTTTATTAAACAGCCTACAGAAG 1573 30 100.0 37 .............................. TTTGACACAAAAGGTATGATTCTATAAATGCCTGCCT 1506 30 100.0 37 .............................. ATAGCATGGGAATAAAATATAAATATAGTGATGACCA 1439 30 100.0 37 .............................. AAATCTTATACAGAAGAATTTAAAAAGGAGGGTTTTT 1372 30 100.0 36 .............................. AATATCATCCCGACAGAGGCGGGAATGAAGAAATAA 1306 30 100.0 38 .............................. AAATATTTTTCCCAGATTTCCATTTCTTTTTTGATTTC 1238 30 100.0 36 .............................. ACATTTTTACATATGTTAAAATTAATATGAAAGCTA 1172 30 100.0 38 .............................. TTAAATTGTTTAAGCTGTTCAATTATTTGATCTGATAC 1104 30 100.0 37 .............................. AAACAACTGCGTAATGAAAAAAATTTGACACAAGAAG 1037 30 100.0 36 .............................. TGCTACAAACTTGCTTGGTGGAGTTGGCGCTGAAGC 971 30 100.0 37 .............................. CGGGACCTGTAGGCGTAGGCAAAACTCACATTGCTGC 904 30 100.0 37 .............................. CCATCCAAGATTTGCTGGATGGTAAACTGACCGACAA 837 30 100.0 37 .............................. TAGATATTTCCGCCGTGTGTATATTCGTATTTGTCCC 770 30 100.0 37 .............................. TTTTGATAGTTTCTGCTCTAGCATCTATGTAACGTGC 703 30 100.0 37 .............................. CCAACAATCGCAAAATCAATTGATGACGTTATTACGA 636 30 100.0 36 .............................. TAAAGCCCCCTTTATTGCTGATATTTGTTATAAATT 570 30 100.0 37 .............................. CGTGGGAAAGTTATGAAACAATTGTACGTGTTCATAG 503 30 100.0 36 .............................. GACAGCAAGAAAAAAGAAAAGCATTAAATGATGTAG 437 30 100.0 37 .............................. CTATGAAAACAATACGAGAACTACTTGACTATGGTAG 370 30 100.0 39 .............................. AACATTATTCTTATTCCTGAAATCACGTGGTATGCAGTA 301 30 100.0 35 .............................. TCCTGTCTCATCATAAGCAAATTACTGTTTTCGTC 236 30 100.0 36 .............................. CAGGCAATGGTGCAAACTACAAAGCAATAGCGTCAA 170 30 100.0 36 .............................. AAAGAAGTCAAAAAGAGGTTTGAATAGCCTCTTTTT 104 30 100.0 40 .............................. AATAAGGAAGGCCATTTTCAAGTATGTAAGCCCATATATC 34 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 100 30 100.0 37 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : AACTATATAAACTTGAAAAACATTTAATTGAGGAACAAGAATATAAGCCATTTATAGCAAGGTGGTAGATATTATTTAAGATATTATGGACATTATACTAAATGTTGCTGAAATTAACTTGGGAAATGATTTAAGGGAATAACAATGTTCATAATATTGGCATACGATATTGGTGAAATAAGAATAGCAAAAGTATTAAAAACATGCAGAAAAATATTAAAATTGAGCACAAACTTTTGCGCTTGAATGTGTAATACAGGTATAAATTTTATTAAATTAAAAACTGTATTGAAAATAAAAATGTAAATATTCGGATAAAAGTATGTCGTCGAACCTAGATAATGTGAAAACAACCTAAGATCGACGACATATTTTTGTGACACGAATTTTCTTGATATTTATAGATTTTTGTTATATCATAATAATGTAAATGAGAAAAGCAAATTAAAATTATCAATTACAAAAAATCTTGAAATTGTGATTTTATGCAAGTAATACGA # Right flank : CCCTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //