Array 1 195151-192563 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBAA01000047.1 Klebsiella pneumoniae strain Kp56 Kp56_S5_L001_R1_001_contig_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 195150 29 100.0 32 ............................. CTGCTGACGACGTGGATCCGCTGGAACGTCAC 195089 29 100.0 32 ............................. TACTGGCAACGGAATTCGGTTCGACGTTTATG 195028 29 100.0 32 ............................. CGCTCCCCAGGACAAACGCGGTCTCCGGATCC 194967 29 100.0 32 ............................. TTGCACGCACGTGAATAGTCCAGGCCGCCTGG 194906 29 100.0 32 ............................. TCCAGCGTGTGCATCTCGCCGATCTCTTTTTG 194845 29 100.0 32 ............................. TAGGGTATCCCGTTCTCATCCACGGCAATATG 194784 29 96.6 32 ............................T TGAACTGATCAAGGGGCGGCTTCAGGCAATTG 194723 29 100.0 32 ............................. AGTAACGAAACGGTCGCACTCAACCGCGCCGC 194662 29 100.0 32 ............................. TCTTGTTAGTGATTGAGTAGCCCATCTGGGAC 194601 29 100.0 32 ............................. CTACCCGTAAAAAAACCGCTGCCGCTGTCGCC 194540 29 100.0 32 ............................. CTCTTAATGGAATTCGTGAAGACGCTGGCCTT 194479 29 100.0 32 ............................. ATCTGGCGAGATTTTACGGGAAATAATATCCC 194418 29 100.0 32 ............................. GTTTTGACCGAGTATATCTGGCGGGATACCCC 194357 29 100.0 32 ............................. GTCCTGGCTGACCCGGACGAATTTGTTGTGAT 194296 29 100.0 32 ............................. GCGGTTTGCTATCAGATGAGCCTGTCATCAAA 194235 29 96.6 32 ............................T GCTGCACGATGTGATTGAGAGATGCCGGGAAG 194174 29 100.0 32 ............................. GGTTTATAGAGGCTGAGGTATTCACAATGCGC 194113 29 100.0 32 ............................. GGCCTGAACCAGAGCACGATCTACACCTGGAA 194052 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 193991 29 100.0 32 ............................. GTTGCGAAGCCTACGTCCAGATCGTAGAGATA 193930 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 193869 29 100.0 32 ............................. AGCTGCGTGACGTTGAAAAAGATGGCTGCGGG 193808 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 193747 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 193686 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 193625 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 193564 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 193503 29 100.0 32 ............................. TCTTCGAGTTCAGGCCGGTATCCCACTCGCTC 193442 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 193381 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 193320 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 193259 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 193198 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 193137 29 100.0 32 ............................. TACAGGACGCACTGGCTGCGAAGCCGTTCGCG 193076 29 100.0 32 ............................. TCGCTCTGTGTCATACGGTTATTAGCCCTGGA 193015 29 100.0 32 ............................. AATTTGCTCATAGAATTGAGACAGTAAACTTT 192954 29 100.0 32 ............................. CCGAAATGGATACCGCCGCGATTGAGTATTCG 192893 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 192832 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 192771 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 192710 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 192649 29 100.0 29 ............................. GGGGTCACTTGGGTGAAACTGAACTAACT 192591 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCTTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCAACACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5857-6855 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBAA01000054.1 Klebsiella pneumoniae strain Kp56 Kp56_S5_L001_R1_001_contig_54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5857 29 100.0 32 ............................. ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC 5918 29 100.0 32 ............................. GAAACTATTTCGGAGCATCTCATTGCTGAGGG 5979 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 6040 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 6101 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 6162 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG 6223 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 6284 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [6338] 6338 29 89.7 32 ......T.....CA............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 6399 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 6460 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [6465] 6522 29 86.2 32 ............CT.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CC [6527] 6585 29 93.1 32 ............CA............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 6646 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 6706 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 6767 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 6828 28 79.3 0 ........T.A.CA........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 93.5 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //