Array 1 222066-221488 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLQ01000009.1 Gilliamella apicola strain ESL0178 Ga0133559_109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 222065 29 100.0 32 ............................. TCCGCTTGTTTTCAACTCTGACGGTATTAACT 222004 29 100.0 32 ............................. CGTACTAGCTAATGATTAGTAGTGTGAGTGTC 221943 29 100.0 32 ............................. CGTTATGTTGAATTTGTAGGCTGTATACTGTT 221882 29 100.0 32 ............................. GGTTTTGGATACTGATAAACAGCAACAGCACT 221821 29 100.0 32 ............................. AAATTGAGCGAGTACTGCGCGACGTTGGACTC 221760 29 100.0 32 ............................. GGTACTGCAGATTGGTGGAAGAAACAATCAGA 221699 29 100.0 32 ............................. CTTAGAGCTATGGCTAACAGATTATTTTGAGG 221638 29 100.0 32 ............................. TATGTTCACTAAAGGATTTGAAGGTGAAATAT 221577 29 96.6 32 ............T................ TCCTGTAAAATATTCGTACACAGTTAATGGAG 221516 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 ATGTTCCCTGTACACACAGGGATAAACCG # Left flank : ATATATGGTGGAGTTTATAACCTGTTTGACAAAGATGTCTCAAATGCTGACTTCGGTAAAACTTTAGAAGGTCGACGTTACTTCATAGGTACCGAGATTAACTTCTAAATTAACTAATAAGTATTTTCCTATAAAAAAGATGACTGTTCAAACAGCCATCTTTTTCTATTTATACTAATATAGATTATTTACAATCTAAAAATAGAAATACCTTTTTTCACCTGTCGATAAAATAACATTAGTGTAATATCAACATAGTAATTTTTAGCTATTTAATAAATCCTAATTATATATTTTAATGTATTATTATTTTTAATTTTATGAAAAATAACAATTTATTGGTAGAATCCTATGAATATTAATTTTAACTACCGTTAATTTAAATTAACTCAATAAAAACATAGTGTTATAAATACTAATTTTATTACAAATTAACCCAAAAAATCGGTAGAAATTTGACGGCCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : TTCTATAAAGCTGGTTAGTCAGACTAAGAACGAAGAATTGGCTAAAATAATTCACGAAATGGATTACATCCCGTGGACAAATGTGTCAACTCCAAGAGGTGTTTATGCTCATGAGATGGGGCACGTGTTACATTATCAATATAAAGAAGATATGGATGATATTATCAAAAAATCATAGGGCGAGCTTGGGCATATGCAATTAGTAATTATGCTCTACATAACAAACGAGAATTTGTTGCTGAAGCGTTTTCGTTGTATATTGAAAATCACATAGAAGCTAAAAAGAGACTTTCTCCAGAATTATTTAAACTTTTCGAATCACTAGATAAGGATATTAAATGAATAAGTTTGATTTATTAGTTGAGCAAGCAACTGAACTGATTAACACCGAGCCACTTCCTGATGATGCAGAGGAACAATTGCAAAAAATTATCGACCAAGCTGACGACAAAACGGAAAGACACATGTTAGGTAGGCTTGCTGAAGCTCTGTTTGTTATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 91041-90646 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLQ01000010.1 Gilliamella apicola strain ESL0178 Ga0133559_110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91040 29 100.0 32 ............................. GAACAATACCGACTCTGTAGTAATGGCGTTTA 90979 29 100.0 32 ............................. TTCGGGCGATTTATAAACGGATAGCGTTTCAA 90918 29 100.0 32 ............................. AGAATGGGAGAAAAGCTTTATTAGCATTTGAG 90857 29 93.1 32 ............TG............... GATAACGAATAAAATATCCCAATAATTTAAAC 90796 29 96.6 32 ............T................ GCATAACCACAAACTGTGGTTGCCCTTGCTCA 90735 29 100.0 32 ............................. TTCAGAAATTGGTTAGTGTTTCCCAACAAATA 90674 29 89.7 0 .......................T..T.A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.1 32 ATGTTCCCTGTACACACAGGGATAAACCG # Left flank : ATAAACCCAAATCTAATAGTTTCAATACCAAATGTTTTGTGGCGTCTACAGGAAGCTCTTTCAATTTGCCAAGATATGTCGCGGACAGGGATAAACAGTAACAATTGAGCGATACCGAGGTCTCGGTATCGGTTGTTGAATCCATAAAAGGTGGTAGAAATTTCTAGTCAGGTATTTTAACTAATAAACAATAGGTTATAATAAGATTATTCCCTGTATACATAGGAATAAACTGGCCACGCGTCAATATTACATATCATTTTTTGCTATTCAAATAATCGCAATTCTATATTTCATTGTTTACCATCTTTTTAATTATATGAAAAATATAAACTTATTGGTAAAATTCCGTAGAATCTAATTTTAATTTCCATCAATTTTAATTATTTCAATAAAAACATAATGTTATAAATACTGATTTTGATAAAAAATAACCTAAAAAAATCGGTAGAAATTTTTAAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : CAAATCCATCACAAACAGCCCTAGTGGCGGTTTTTCATTGCCCTTAATTTTTAAATAACATACCATTACCTAAAAAAGGAGATGGTATGAAAAGAATTGCATTACTAGGATTGGTTTGTTTTGCGTTGTCTGGTTGTGGTGATGATGGTGGCGGTAAAGTTACTAATGAGTTTTTGGTTGGTAAGTGGGAGTGTAAATTGGACGGTTACAGATCGAAAATGAAAAATGGAAAATTTACTGATTATGTTAGCGATGGGTTTAATATAATAAGGAAGAAAGAATTCAAAATAGAAAATAATAAACTGTATAGTATAAGTAAAACTGAAATGGATGGACTTAGTTTTTGGGAATCGAATGATTGGGATGAAAGTGATATAACTATTACTCATACGGGGCAAACAGTAGAGAAAAAGGAAAATAATCTAATAGAAAAATCAACCAATTCTCTAATTAAAAAATCACATGATACTTATTTAATGATTGAGGAATATATTAAAACT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 93581-93430 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLQ01000010.1 Gilliamella apicola strain ESL0178 Ga0133559_110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93580 29 89.7 32 .......A....C.............T.. CACAGGCGGCTCATTAGGTAAGTTTACAACCA 93519 29 100.0 32 ............................. ACGCCACACGAAGCCCCCGACAATCTCAAATC 93458 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 95.4 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : TTTCTAAGGAGAAACTAAAGTGATTAGTATAAAACTAATATTAATATTAATATTAATTGCAATTCTTGGTTTTATTGGCATTTTTGTTGCAACCGTTTTATGGATATGTTTATCTAAAAATGACCAATTTGATAACCAATTTGATAACCAATTTTATAACCCTATTAAATGTAAGAATCCTATGGATTTATCTAACGAGGAAGGAATAATTTTTTATACACAACTGGTTAGAATGATGGAAAGTTTTAATAGTAGAGAAATTTAAAAAATGAGCTTTAACAATAAACATTTTACACAAGGCGGACAAGTCGTTTTTTATATGATTAGCATGTTTTTGCAAATCAATAAAATTATTTTTAAATACTTGTTGTACTGTCTTTTAGCATTATCGGTATTTATTTTTTTTTATTAAATGCTACTCGTTTTAATGCTATCAAAATGGGTTATTATTATATAGCCGAATTAAGTTCTTTTGGTTATAACAGTAATATAACTATAAA # Right flank : CGTTAAGCCTTAATGTTGCGGAATATGCTAATCATAAAACATTAAAAAATATTATAAATCAAATGGAATATTTACATTGGCATCCCGTACCAACACCTAGATGTGTTTATGCTCATGAGATGGGACACGCATTACATCATCAACACCAGGAAGAAATTGATAATATCATTAAGAAATTGTGGGGACGAGGTTGGGCACATGCAATTAGTAATTATGCTCTACATAACAAACGAGAATTTGTCGCTGAGGCGTTTTCGTTGTATATTGAAAATCGCATAGAAGCTAAAAAAAGACTACATGCAGAACTATTTAAATTTTTCGAATCGTTAGATAAGGGTATTAAATGAATAAATTTGATTTATTAGTTGAACAAGCAACTAAATTGATTAACACCGAACCGCTTCCTGACGATGCAGAGGAGCAATTACAACGAATTATTGACCAAGCAGAAAGTAAGCCTGAAAGGTTTATGTTAGCCACTTTTGCTGAGGCTTTGTTTG # Questionable array : NO Score: 3.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.69%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.20,-8.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 95416-94472 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLQ01000010.1 Gilliamella apicola strain ESL0178 Ga0133559_110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95415 29 100.0 32 ............................. TCCGACAGTTGATATAACAGTATTTGATAAAA 95354 29 100.0 32 ............................. AAATATTAGCACCATACGTTTTAAAATCATAT 95293 29 100.0 32 ............................. GCATTTACTGAATAAATGAGTAGAGTAGAAAA 95232 29 96.6 32 ............................T CTGCCTGAGCACCATTTTTCAGGAGTAAGCCC 95171 29 100.0 32 ............................. TCGCCCGCCGAATTCGATTATTAGCAATCGCT 95110 29 100.0 32 ............................. AGGTTATCAACATTAACCGCAGGTGTTATTGC 95049 29 100.0 32 ............................. CGTTACCCTGACAATCACCGACAATAGCGCAG 94988 29 100.0 32 ............................. GGTTCATGAGATTGGAGAAATAGATATTGATG 94927 29 100.0 32 ............................. GAACTGTCTACTTTTAATTTTCCATTAGTAAA 94866 29 100.0 32 ............................. ATCTCTCATTATTAAATAAACTTTATTTTCAA 94805 29 100.0 32 ............................. TTCTACTTCTCATTTACATGCTTCCGAATAAA 94744 29 96.6 32 .............A............... TCATTTCGAGTTTTACGGATCGAGGAAAAGGG 94683 29 96.6 32 .............A............... CGTTAAATCAGGCTAAAAATGAAACTAAACAG 94622 29 96.6 32 .............A............... AAAGGGAAGATGAATTACTTCGTCGTTCAGAT 94561 29 100.0 32 ............................. TTCATGCGGACGAGAAATTCGTAATGAGGCAA 94500 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.9 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : TCAGTATAAAAATCATCAATAATTTAAATTAACTTTATGTTTATAAAGAAAACATAATATTTAATCAATACAAGCATTTATTTTAATATTGAGTAATAGATTCGAAATAACCGAGTTTACATAATGGTTTTTACTTAAAAAATATATTGGAGTATTCAAAGATCGTTGAAATGATATTAATTATAAACGAGTATATGAATCATAAATTATGAAAATTTGGTAACTAAGATATACAAACAAACCACTTTAAAAATAGAGTAATTTTGATAATAACAAACCACTAATAACATCTCAATAAAATCTACTATTTTTTTAACTAAATGAAAAATATAAACTTATCGGTAGAATTCCGTAGAATCAAATTTTAATTTCCATCAATTTTAATTAATTAAATAAAAACATAATGTTATAAATACTGATTTTTATAAAAAATAACCTAAAAAATCGGTAGAAATTTGGAAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : ACTTCAGTAATCATTATACTTTAAGACGTATTAATCATATAATAGGTGAAGCATCGTCTAATTTAAAAGCAAAATACGAACACAATTCACACTCAATAAAAGATAATACAGGTCTTCAAGCTCAAGAAGAAATAATGTCAAAACATGTTTTAAACAATACGGGAGAGAGACACGCAGAGATAAACAAAGCGCAAGAGTTTGAGCAAAAAACCAATGAGGGAGTTATTAATAAAAAAGAAAATGAGTTCGACAAAATTCATTTTAATAACCAAGAAAAACATAAAAACCAAACAGAAAATATACGAGAAGTAACTAAAGAAGTAGAAGACAATCAGTGGGTTAGAGATAAAAATTTTGTTCAAACTTCACTAGAAAACAAATATAAATAGGATTTCTAAGGAGAAACTAAAGTGATTAGTATAAAACTAATATTAATATTAATATTAATTGCAATTCTTGGTTTTATTGGCATTTTTGTTGCAACCGTTTTATGGATATGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 103253-102062 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLQ01000010.1 Gilliamella apicola strain ESL0178 Ga0133559_110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 103252 29 100.0 32 ............................. GTATTGCATACTCGTATAACGAGGCATATCAT 103191 29 100.0 32 ............................. TTATGAATAAGCAAATTAATATTATTCCATTT 103130 29 100.0 33 ............................. CAGCCATTTAAACTTATTTCGAACTAAATTTAC 103068 29 100.0 32 ............................. TCGATTTTTTCATAGGGTGTCATGACCTTTTG 103007 29 100.0 32 ............................. TAGACCTTATTTTTTTAAAAATATTTCAAACA 102946 29 100.0 32 ............................. TCCGCTGTCTCGTTGCAGTTTTGAGCTCCTGA 102885 29 100.0 32 ............................. GAAAAAGTATGACCCAACCAACACTAGAAAAA 102824 29 100.0 32 ............................. GTAACGCCAGAATCTGACGTGTATCAGGCACG 102763 29 100.0 32 ............................. TTCATCTTCAACAATAATTTTAGTTCCATTTG 102702 29 100.0 32 ............................. AAACATTAAACATCAATTTGGAGAGAGATATG 102641 29 100.0 32 ............................. GCGTATTTTGGTTTTAGAGATAAATCCACTGG 102580 29 100.0 32 ............................. CGAGGGAACATCGTTCACATCTGTATCTGATA 102519 29 100.0 32 ............................. ATTTACCTGCGTCTAAATTTGATGAGGCTATT 102458 29 96.6 32 ............................A CCACACGGGTCTACAGCACCGTACTATTTTGG 102397 29 100.0 33 ............................. GGATTCTGGCGAAATAACCAACGCTGAGCTCGG 102335 29 100.0 32 ............................. ACCAAAACCCTCTTTTAGATCAGTTGTTTTTT 102274 29 100.0 33 ............................. GCAATCGTTCCTCCGTATATGCCGGGTATGCGT 102212 29 93.1 32 .............A..........A.... ATAATAAATTATTGGATCAGTATGAAGCTGGA 102151 29 89.7 32 ............CA..........A.... CCACCAGTCGTCCTCACGCTCATAGTCTGGTA 102090 29 89.7 0 ....................A...A...A | ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.5 32 ATGTTCCCTGTATGCACAGGGATATACCG # Left flank : CAGTATAAAAATCAATAAATAGTTTAAATTAACTTTATATTTATAAAGAAAACATAATATTAAGTCAATATAAGCATTTACTTTTAAAATTAAGTAATAGATTTGAAATAACAACCTACATAATGGTTTTTACTTAAAAAAAATAGTTGATTACTTTAAGATTGCTGAAATGATATTAACTAAAAACGAGTATATGAATCCTAGATTAGGAAAATTTGGTAACTAAGATATACAAACAAACCACTTTAAAAAATAGAGTAATTTTGATAACAACAAAGCACTAATAGCTTCTCAATAAAACTTACCATTATTTTAACCAAATGAAAAATATAAAATTATCGGTAGAATTCCGTAGAATCTAATTTTAATTTCCATCAATTTTAATTACTTAAATAAAAACATAACGTTATAAATACTGATTTTGATAAAAAATAGCCTAAAAAATCGGTAGAAATTTAGCAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : AACGGTCAACATATTCAGACGTTTTAATCATATGCACAGGGATAAAATACAAATCCACTACCGCCTTTGTGGCGGTTTTTAATTGACCTAATGGTTAAATAGCATACCATTACCGAAATTTAATTATTAAGGGAATGGTATGAAAAAGATTAAAAAACTTTTATGAAGCTTTTTTGTTTTCAAGATAAAATTTAATTGCATCAATAATCAGTTGCGCTTGAGGTACCTTTAATTGATTGCTTGCTTCCTCAATTAATGCAATATCATCTACATGGAGCTTAAAACCTTTTGTTTTCACACCTCGTTTTTCGTCACTTTTTTTTTGAATTACAGCCCTTGTTAATGCCATATAATCACCTTGATTTTTAAATAAAAATTGTTATATTTAAGGCCGCAGGTGAGGACTGCAACCTTCAACCTTTGAAGCAGTTTTAGTAAACTGTACAACTTCAGATTATTAAAACTACGAGAATTAAGATTCTGTTCTTCTTGTTTCTCCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 108025-106957 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLQ01000010.1 Gilliamella apicola strain ESL0178 Ga0133559_110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108024 29 100.0 32 ............................. GTGTCGGAAATAGTTGCAAAATTGATAGAGGC 107963 29 100.0 32 ............................. TTCGCTACGTTATTACAGGTAATCACTGCGAA 107902 29 100.0 32 ............................. TGGCGCATCAGGTATGTGCCAATTGTTACCTA 107841 29 100.0 32 ............................. GTGATGTTATTATTTTAGGTGGTTTGACGGAT 107780 29 100.0 33 ............................. CATTAATATATAAATGTTGTTATACAATACTGC 107718 29 100.0 32 ............................. AATATGGAGCTGTTCTAGATGAAATAATTAGT 107657 29 100.0 32 ............................. TGATATGCCGATAAACTCCATTATTTTGATAA 107596 29 100.0 32 ............................. TTATTTGGTGATATTGAATCTATAGAGATTAT 107535 29 100.0 33 ............................. AGACAAATAATTGTGTGCGACAAATGCACCATT 107473 29 100.0 32 ............................. GATGTGAAATATCCTATATTATGTGATAATTG 107412 29 100.0 32 ............................. AGACTGATCTAGTTAGAGCCGCATACAATCGA 107351 29 100.0 32 ............................. TTACTAGTAATAGGTTTTTGCGTAGGATTCTA 107290 29 100.0 32 ............................. AAAATGGCGGTCGAATTCATGCGGTAAGTGGT 107229 29 100.0 32 ............................. ATTACCAGTGCCGCTGTCTAGCAATTCCTTAC 107168 29 100.0 32 ............................. TATGCCACTATGGATCGGGATGGTCGAACGTT 107107 29 100.0 32 ............................. GGTTTTGCTCGTTTAGATGCGTATTTAACCCG 107046 29 100.0 32 ............................. TGCGTTAGCTGAGTTGTTTAATCGAGATAGTC 106985 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.8 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : CAGTATAAAAATCAATAAATAATTCAAATTAACTTTATGTTTATAAAGAAAACATAATATTTGGTCAATATAAGCATTTACTTTTAAAATTAAGTAATAGATTTGCAATAACAGCCTTACATAATGGCTTTTACAAAAAAATATAGTTGATTACTTTAAGATTGCCGAAATGATATTAACTAAAAACGAGTATATAAATCATAGATTATGAAAAATTTTGTAACTAAGTTACACAAACAAACCACTCTTAAAATAGAGTAATTTTGATAACAATGAAGCACTAATAACATCTCAATAAAACTTACCATTTTTTTAACCAAATGAAAAATATAAACTTATCGGTAGAACTCCGTAGAATCTAATTTTAATTTCCATCAATTTTAATTACTTAAATAAAAACATTATGTTATAAATACTGATTTTGATAAAAAATAACCTAAAAAATCGGTAGAAATTTAGCAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : GGGTGGGTGCATCGATTCTCCCGAGGTTAATCGTATATTCCCTGTATATATATGAAGAAAAGATATTGCAATAAAAATAAACGAGCAAAGTTGCCTTTAAAGACAATATCTGATTTATTAAGATTAGCTGTAAATGATTTTTATAAAACACAATAAAACTTAATCTAACATTAACCAACGATTGTAAGGAATTGATATGAAAAAGATACTAATGTTAATTACCGCTCTATTTTTATTCGGATGTGAAAAGACCTATACTGTTTCTGACTTTGAAAATAACAAAGAACTACTAGATGAATATAATAAAAAATGTCAAAATGGTGAAATTGATGGGGATAGCCTAAACTGTAAAAATGTATTTGATGTATTATTAAGTATAGGAACCCCAGAACGCGACCCTAATGCTTGGAAATAATTAAATTACTATCTGTGATAAGTTTTTAAACTTAAGTTGATTGTTATTTATTTGAAACTTATCACTTTGTATTGCCATCTTATCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 730278-727931 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLQ01000010.1 Gilliamella apicola strain ESL0178 Ga0133559_110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 730277 26 100.0 35 .......................... CCGCATGGGAACCGTTATATAAAATAACTTGGCGG 730216 26 100.0 35 .......................... CCGTAGGTCGTAATCATTAAAATCACGACCACCAC 730155 26 100.0 35 .......................... CCTCTAGTTCGTCTAATATAGATTCAAATAATGGT 730094 26 100.0 35 .......................... CCGTACAATCATAATCAAATTTTTCTTTTATTAAT 730033 26 100.0 36 .......................... CCGACGCCCGCCATTGGATGCATACAAACAACCCAA 729971 26 100.0 35 .......................... CCGTCTTTATAATCAACACAACCTTTTGCAATAGT 729910 26 100.0 35 .......................... CCGAATGCCAATTATGCGGTTAACCCATCGATATA 729849 26 100.0 35 .......................... CCGAGATATAATATAAATATAAAAATACTAAAGTT 729788 26 100.0 35 .......................... CCGTATCTTAGTGATAAAACTAAAGAATGGAAAAA 729727 26 100.0 35 .......................... CCGGACATACAGGAGGGCGACATCATTCTTGTTTG 729666 26 100.0 35 .......................... CCGCAGGTCAAATAGTAATCCTTTATGAAAATTCT 729605 26 100.0 35 .......................... CCGGCTTGGTTGCGGCCTGTTCTTCGATATAGCTT 729544 26 100.0 35 .......................... CCGGGCGATTCATTTCAGATTTTCCAATAATGATA 729483 26 100.0 35 .......................... CCGGGGCTGAATTTAACTCAATACGATTTAGTTTA 729422 26 100.0 35 .......................... CCGCATTGCGCGTAATCGGTGATTCAATGAGTCCG 729361 26 100.0 35 .......................... CCGATCGTGGACACAGCGTCCAAAATTCATCATCG 729300 26 100.0 35 .......................... CCGCTTAACAAAAATATCACAAATGCTAACAGCAC 729239 26 100.0 35 .......................... CCGATATAAATGAAATGATTCAGAACGGTATTAGT 729178 26 100.0 35 .......................... CCGGATACACGTAAAGACATTTGCCGTGGTACATT 729117 26 100.0 35 .......................... CCGTTAATGATTACGCATTAGAAATATCTGAACAT 729056 26 100.0 35 .......................... CCGTAAAATCCGATGATGACGGAGTCTATCGGGTG 728995 26 100.0 35 .......................... CCGCTGTACGGCTGCATTTGCGAGACGTGCGGGAT 728934 26 100.0 35 .......................... CCGGCTAAAGTTGTTAAAGTCACGGGTGATAGCAT 728873 26 100.0 35 .......................... CCGACAGCAACCCATTCTAACGAAATTGAGCAACG 728812 26 100.0 35 .......................... CCGGACAAACCGTACAAACTTTCGGACGGGCGTGG 728751 26 100.0 35 .......................... CCGCGGTTCAGGCATGGGGAATTTGTCATATTAAT 728690 26 100.0 35 .......................... CCGCATTTGATGATAGACGCCTGGTGCTGATTATT 728629 26 100.0 35 .......................... CCGAATAATTTCCATATTTTAGATTTACCTAATAT 728568 26 100.0 35 .......................... CCGAACGGAAAATTTTTAGGCTGGGTTTTAACCAG 728507 26 100.0 36 .......................... CCGCCCTTTTCTTTTAATGATGCTAATCGTTCTAAT 728445 26 100.0 35 .......................... CCGCAAAATATACCGAATTCAGTATTTCCGAATGT 728384 26 100.0 35 .......................... CCGAACATTTCTAAAAATCACCTCGTCCCCAACAT 728323 26 100.0 35 .......................... CCGGCGGGCGGTCGATTTTGCCGAAAGCTCGGGGT 728262 26 100.0 35 .......................... CCGTCTAGATGTCCTATTGATTATTCACCGCGGGA 728201 26 100.0 35 .......................... CCGGGTCAGATTATTTCTAATATTTTTTCAGATAT 728140 26 100.0 36 .......................... CCGCGGTATTAGATGATAACGGTTTAACAATTTCTG 728078 26 100.0 35 .......................... CCGGCTCTAGCTGATTTCATCCTCACAATGGTTAA 728017 26 100.0 35 .......................... CCGACCATACCTCCCACGGAGTGAGGTAGCCCGAA 727956 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ==================================== ================== 39 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : CTTATTGAAGAAGTTTTGTCCGCTGGTGGTATCGAACCGCCTCTACCACCTGATTATGTCCTGCCACCAGCTATCCCAGAACCTCAATCTTTAGCCGATAGTGGCTTTAGGAGTCGCTAATAATGAGTATGTGTGTTGTGGTAACTGAAAATGTTCCACCTCGATTACGTGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGAGTTTATATCGGTGACATATCAAAACCAATAAGAGAAATGATATGGCAACAAATTGTTAAACTTGCAGAAGAAGGCAATGTAGTCCTTGCTTGGGCGACTAATACAGAATCAGGATTTGACTTCCAAACTTATGGCGCTAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGATTAGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAACGTTCTTTAAAAAATTAAAAAAGTTGGTAGATTTTTTGGGTGTCAATAAATCTAAATAAAACAATTATATATATTTAGA # Right flank : CTATATTCGTCATTTTGCAGGGCTTTCTGCAAATTGTATAAGGATAAATCAGCTTTTACCTGATTTTTTATTTAACTGAAATCCTTTGTTGGATAAGTTATTGCTAATTTGTTCTAAGTCAGAATGTTCAGTTCTTTCTGAAACATTAAATAATTGAGCAAAATATTATACAGTTTTGTATCCATTTTGTTTTATTAGCAGTTTATCTAAAAAAGTTTGTCTTTCTGTTAGAATTGGATTCCTTCTTGTTCAATAACAACGCAATGATTTGATCATAATTAGTTAAAATAGTTTTTATGTCACAAAGATCTTCAACAACTTGTTGCAATGATGGTATTGAAAAACACAATAAGGTATAAAATTAGATTTAATTTTTGTCTAATATTTTTATACTTATTGATAATTTATTATAGGTAATAATAAGTTTTTGAGATTATTTGCCTTAAAAGCATGGATTATGGTAGATTTTTCTTATTTATTATTGATATTAAAATAGAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //