Array 1 40113-39352 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJVGH010000025.1 Escherichia coli isolate IN01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40112 29 100.0 32 ............................. TAAGAGAACCCGCCATACGGCGGGTATTTTCA 40051 29 100.0 32 ............................. GACCTGCCGTATCGGGTTTTTAATTTCTATGT 39990 29 100.0 32 ............................. ACGGACAAAATATATATTGATTTGCGAATTAT 39929 29 100.0 32 ............................. GTAAAGAAACTGCCGACAAATCCCTGTTCGTT 39868 29 100.0 32 ............................. CCCGTCACCGACGCGCAGTGGCGCTACCGTGA 39807 29 100.0 32 ............................. CAATCACTGATTGAAAACGCGATTAATAGTGA 39746 29 100.0 32 ............................. ATTTGGCGGCACCAGATTTTGCGTCAGATGAC 39685 29 100.0 32 ............................. CCTACGAACAATTCCTCTGAACCGCCCGCACT 39624 29 100.0 32 ............................. GGATCTAACGCGCTGTAAAAATTCCGTGCTTT 39563 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 39502 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 39441 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 39380 29 96.6 0 .A........................... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCCTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 66939-65812 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJVGH010000025.1 Escherichia coli isolate IN01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66938 29 100.0 32 ............................. ATTTTATGTGCCGCGTTGAGGCGTGGGCGTTA 66877 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 66816 29 100.0 32 ............................. GAGATTGCGACGCTCCGTCAGCGCATCACAGT 66755 29 100.0 32 ............................. TGGGAACTGGCCCGCGCCATTGGTCAGGGGAA 66694 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 66633 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 66572 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 66511 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 66450 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 66389 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 66328 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 66267 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 66206 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 66145 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 66084 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 66023 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 65962 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 65901 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 65840 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 68854-69723 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJVGH010000004.1 Escherichia coli isolate IN01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 68854 28 100.0 32 ............................ AATTGTGTCGCGTCTATTGCTCCGGAGATAAT 68914 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 68974 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 69034 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 69094 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 69154 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 69214 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 69274 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 69334 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 69394 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 69454 28 100.0 32 ............................ TCATTGGAATACATGAGTTGCGCCCATTTTGT 69514 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 69574 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 69634 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 69694 28 85.7 0 ....................A...C.CT | T,C [69714,69718] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 75060-76348 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJVGH010000004.1 Escherichia coli isolate IN01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 75060 28 100.0 32 ............................ AACGAGCAAAAACGCGCGTACCGGATTGCGGA 75120 28 100.0 32 ............................ ACCAGAATTAATAATCTTTTCATCGTCACGCC 75180 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 75240 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 75300 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 75360 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 75420 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 75480 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 75540 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 75600 28 96.4 32 .............T.............. TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 75660 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 75720 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 75780 28 100.0 33 ............................ GGTACTAAATGCGATGATCACCCCGAGCGTGAT 75841 28 100.0 32 ............................ CACCGGGCCTGCTCAGTCGCGCCGACGTCCTG 75901 28 100.0 32 ............................ AGTTGAGTAGCGTGGGACGCGATACGCCCAGC 75961 28 100.0 32 ............................ ATCCTGATAATTCAAGTCTGTGATTACCAGTA 76021 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 76081 28 100.0 32 ............................ AGTACGCTATTACGCTACCCTACCCAAAACAC 76141 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 76201 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 76261 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 76321 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //