Array 1 754913-752996 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040443.1 Escherichia sp. E4742 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 754912 29 96.6 32 ............................T GCGGCAGGGATCAGAATTTCGTGGTTTAGCAA 754851 29 96.6 32 ............................A CCTTTGAAATTCGCTTTGTATGGCTTTCTGGC 754790 29 100.0 32 ............................. CCGATAAAAATATCTGTGTGTCGCCGGTTAAT 754729 29 100.0 32 ............................. ACGGCCCGGTGATCGCGCTGATATGCCGTCAG 754668 29 100.0 32 ............................. TCAGGCAGATGGAAAGCTGGATGATCACCACC 754607 29 96.6 31 ............................T TGCTTCCAGGCTCTTTGAGCGTCCTGCTGCT 754547 29 100.0 32 ............................. CCACGCTCTGCCAGCATGTTGAGTGCTGCCAG 754486 29 100.0 32 ............................. CAACCGCATTTTCCATCATTCTGGATACCACA 754425 29 100.0 32 ............................. GCCACGAACACCACTTCGCCTGGCGGGTAAAC 754364 29 100.0 33 ............................. CGAATCTGGGATGCCGGCCCTGTTTCAGTGGAC 754302 29 100.0 32 ............................. GCAACACGACGCGCATCCCCCTCCAGTCGCTC 754241 29 100.0 32 ............................. TTAACGCCGGGGATCATGTTGAGTTTGTCCAC 754180 29 100.0 32 ............................. TTGACTCGGGGCCTTTCCACATCCGGCCTTCA 754119 29 100.0 32 ............................. GGATCGGCTGATACGTTCGGTGTCATGATTGG 754058 29 100.0 32 ............................. TGTTGCTCATCATGTAGTTCAGTCACCAGTTC 753997 29 100.0 32 ............................. CAGAACGCATTAATCAGGTGGTGGATATGAAA 753936 29 100.0 32 ............................. CCTGCGGAGTTAATGCGACTTTCATCGCGGAT 753875 29 100.0 32 ............................. CGGCGCAGGTAGTTTTTCAGTGGCGCGATTTT 753814 29 100.0 32 ............................. GTTGTCGGTGGCGGGGCGGAGATTGTGGCACC 753753 29 100.0 32 ............................. TGCGATCACCTGAGACAGCGCAGTCACTGAAT 753692 29 100.0 32 ............................. ACACTTCACTCTCTGCGCCAGTAGTGGCAGAG 753631 29 100.0 32 ............................. TCATACCGATACTGGCTTGAGGGTGCATACAA 753570 29 100.0 32 ............................. CACCTTTGCTGTGATATATGCTTGCATTATAT 753509 29 100.0 32 ............................. GCTGAGCGAGATTACGGTGTAATCCTTCCGGA 753448 29 100.0 32 ............................. CGTACAGTATAACCTCATCCGGGAGCGTCTCA 753387 29 100.0 32 ............................. CGTTCTGTAAGTAGCTAAATGTTTGCCGAGGC 753326 29 100.0 32 ............................. GCATCGAACTGGATCAAGGTCGAAGTGATTAC 753265 29 100.0 32 ............................. GGCGTTTCATGCTCATTGTTACCAACCCGCCA 753204 29 100.0 30 ............................. TAAAACACTCCCTGCCATTCGGGGGGGGAT 753145 29 100.0 32 ............................. TCAGAATTAAAAGTTTATATCGGTGCATATAT 753084 29 100.0 32 ............................. TCTAAAACTTTTTGATCAAATGTGCGGATATA 753023 28 86.2 0 ......................-.CT..C | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTGCCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGGTTGGTTTCGTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAATTAAGGAAATGTTTTAATTTGGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AACTCTCATTTTCAATCCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAACATTATCCGCATAACATCACGGCAGCGGCGTTCTATTCTTCCAGGAAGTGCCTTATCTATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCTCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTTGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTGGTGGCGGCAATTCCATGACTGCGGGCAATTGCCAGCGCCCGGTCGCGCGTTAATTTCCTTACTGCTTCAGGTGTTTTTACGCCACTGTTGAAATACAGCTTATCGCCAACAATCAGATTATCGAGGTTAATCACCAATAAAGTATTTTTCTTTTCGGTATCGCTCATGCGCTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 780976-780398 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040443.1 Escherichia sp. E4742 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 780975 29 100.0 32 ............................. GGATGTTTGTGGTGGGACTGACAGCCTATCAC 780914 29 100.0 32 ............................. AGCATCCAGATATGACCATGTTTGGCGGTAAA 780853 29 100.0 32 ............................. ATGCGGACGTGCTGTTAATCTTACAATGAATA 780792 29 100.0 32 ............................. GTTTGTTTTCGGGATGATAATATGAATATGTG 780731 29 100.0 32 ............................. GGCGATTGACGCCATTTCTGACGCGTTATCAG 780670 29 100.0 32 ............................. ACCGGGAATACTCCGGTCTTTTCTTCAAAATT 780609 29 100.0 32 ............................. CTCCCGCCACGATTGTTATTCGTGTTACCAGA 780548 29 96.6 32 .............C............... GTACGTGAAGGACTGGTATTTACGCAGGAAAT 780487 29 93.1 32 ............TC............... GATTTAGAGAGCCAGACGTTGGTCAGTTATTC 780426 29 82.8 0 ............TC...........T.AT | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.2 32 GAGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TCTGGATGAATTGCTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAAGATGATGCCACACGTTTGTGCATTGAAACTTGCATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTTTTTGTCGCCTCTGAAACTCATCCATTTTGCCCATTCCGGACTAATCATTGTCATTCTCTACAAATTCTGTGGCGTTAATTTTTCTCTGGGGTAAAAATTATTGGGGTGAAGTTTGGTAGATTTTAGTTTGCATAGAGTTATTTTAAATATTTACCTTTTAAATCAATGGATCAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTAGTAGATTGTGATTGGCTTAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TCAGGTACGTTCAGGCCGGGCAGTTTTCCGCCCGGCCTACCTCATTCACGCATTCGACCAGCTCTGGATCGAATCCGCATTCCCCAATTCCCCATGCATCACTTCATACGATTTTTTCAGAATCACATCAGTGTGTTTGGTTAAATCTTTGAAAATGCCTTTATTCATCGCGTCGTAGCGTTTGGCATTGCTCTCAACAGGCATAAAGATATCTTTCACGCGAACCATTTTATCGACAGCCGTTGCGTAATCCGGGTATAGCCCCAGACCTACCGCTGTATTAATCGCTGCCCCTAGGCTTGCACAACCGTTAATGGCGTTACGTCGTGCCGGAAGGTTGAACACGTCGGCAAAAATCTGCATAAACAGATCGCTGTTCGAACCGCCGCCAGTAATGATCACATGCTTCGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTGTTCTTCAGCGTCAGCGCCACGCTTTCCAGTATTGAACGATATATCCATGCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1095622-1094617 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040443.1 Escherichia sp. E4742 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1095621 29 100.0 32 ............................. TTCACCGGTAAACCGGTGGAGTGCCGGATGGC 1095560 29 100.0 32 ............................. TTATTCAGGACACCTGAGCCATTTCCCTTCAG 1095499 29 100.0 32 ............................. AGATTACGCCAAAAAACTAAAGGCAATCAGAA 1095438 29 100.0 32 ............................. GCAGACCACTGAACAGCTGATGTTCATGGCTG 1095377 29 100.0 32 ............................. AAATCGCCCGTGAGTGGGGAGAACAGCCTGGA 1095316 29 100.0 32 ............................. GCATTCTGTCCAGCATTGGTCAGAGCGGACTG 1095255 29 100.0 32 ............................. AAAGAGCATCTTTCCACCCGGTACCATTGCTG 1095194 29 100.0 32 ............................. TTTTCCCTGACGTGAAAATACCTTCAGGACGC 1095133 29 100.0 32 ............................. CTTATCTCTTTTGTAGTATAGAGTCAGTTGAT 1095072 29 100.0 32 ............................. GCAGAAATGGTAAGCGTTGGCTGCAAATTGCC 1095011 29 100.0 32 ............................. TTACAGCAAACTATCACAGCGCGACGTTGATC 1094950 29 100.0 32 ............................. GCAGGATCAATGCGTTCTGTGTTGTCTGATAT 1094889 29 100.0 32 ............................. CAATTTACGTAACCCAGCCGACTTTTCCGGAC 1094828 29 100.0 32 ............................. CAGCTATGGCTTCCATTAGTCTGATTCAACTG 1094767 29 100.0 32 ............................. TTCCGCTCCGGTTCCGGTCAGTTTGTGAATGA 1094706 29 100.0 32 ............................. CAATATACCAGCCGCCCGGAGAACGCCACGAA 1094645 29 93.1 0 G...........T................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 ATGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGGTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTATTAAAAAATAAGTAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTCAAATAAAGTTGTTTAAAAACAAACATATATGCTTAGT # Right flank : GCTCACTCTGATGCAGTTTATGTAATTCACGAGTGTTCCCCGCGTGCGTATTTTCATGGAAGGAGATCAGTGAAGGTAATTTAAAAATGCCAGTTACTCACCGATCTCCTTCACGATAATACGCAGTCAGTTTGCACATAATCCCCCCATCTTTTGCAATAGACGTGTTTTCTCTGGTGGGGTGATTACCCAGTCTTTTTTACTGTGTCTGACCTTTTGTACTGTAGTGCAGTTGTAATGCAAACCTCCCGGGCTTTTGGGAGACAGCATTTCAGTCCTGGTTCCATCATTACCATTTTGTTGATTCGAAACGAAAACCTTCATCAAAATCGATCGATTTTACCGATCGATATGATCGCATCGATCGGTTGTAACCATTTTACCATATCTTTTGCATGGTTTTAAAATAGGCAACCCTATTTGTCGGGTAGGGTAAGAACCAACGGAGATGATTGAAATGAAAAAGGTTATTGCGGTTTCAGCGCTTGCAATGGCAGGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3939778-3940406 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040443.1 Escherichia sp. E4742 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3939778 28 100.0 32 ............................ AAATTTGATGGGCGGCAGAAGTAGTTTTACCT 3939838 28 100.0 32 ............................ TTTATAAAAATGGTTGTATTTAGTCTTGTTTT 3939898 28 100.0 32 ............................ TAAAAGAAACTCTCACTTCGTTCGAGAGAGCT 3939958 28 100.0 32 ............................ GCGCGTAACCGCGCCCACTGCATTTATCGCAT 3940018 28 100.0 32 ............................ AGTTAATACACGGGCGGGAGTGTCTGCAATTG 3940078 28 100.0 32 ............................ GTGCCGGGTGATGCCCCGCTGATATTTAGTCA 3940138 28 100.0 32 ............................ TATAATGACTACATCAGCAGGACGCTGAAACG 3940198 28 100.0 32 ............................ CCTTGTCAATTACCTAACGTGTAGAAAATTTC 3940258 28 100.0 32 ............................ AGAACCGAGATCTTCCCACACTTTAAGAAGGG 3940318 28 100.0 32 ............................ TGCTTTCTGCCCAGGATTGTAGTCAGGCGAGT 3940378 28 92.9 0 ....................T...C... | C [3940401] ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGTTTATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCGATGGGCGCACGTCCGATGGCACGTGTGATTCAGGATAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGCTCGCTGGTGGATGGTGGCCAGGTGACAGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCATAAACCGGAAGCCGCGCATTAATCAGATTGTTAAGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGGGCGGAGGTTCAGACCCTTTTTTTGATGATGATGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGTGTTAAGGCGTTCTCAACTCCGAACCATTAGCCACAACGCACAATAACAATTGTGATAATTGCGATGGAAATCAATTTCTCGCACAGAAATCAATGCTGTACTAATCCTAATTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCCAATTACCTTACTCCATCTGACCTCAAAACCATTCTCCACTCTAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAATATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACTCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 3954356-3955226 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040443.1 Escherichia sp. E4742 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3954356 28 100.0 33 ............................ AGTGCTGCCTGCTGAACGCCTGCATCCCTTGCC 3954417 28 100.0 32 ............................ ACGTAACAGGGCGACATCATGAGGCGACAAAG 3954477 28 100.0 32 ............................ CGCTTGTGATCCGCTCTCTTGAGGGTGAGAAA 3954537 28 100.0 32 ............................ GAGGCGGTAGCGAAGCTTTTCGCGGGCTTCTG 3954597 28 100.0 33 ............................ TCCAAGCAGACGCAGGAAGTTAACATTACGCAT 3954658 28 100.0 32 ............................ GACAGGTGGGCGTCGTGGTTATGGCCTTCCCC 3954718 28 100.0 32 ............................ GAGGCGGTAGCGAAGCTTTTCGCGGGCTTCTG 3954778 28 100.0 33 ............................ TCCAAGCAGACGCAGGAAGTTAACATTACGCAT 3954839 28 100.0 32 ............................ GACAGGTGGGCGTCGTGGTTATGGCCTTCCCC 3954899 28 100.0 32 ............................ ACATCGTGCAGGCTTTATTTGCCATTCTGATT 3954959 28 100.0 32 ............................ ATCAGAACTAGACACGCTCTCAGATGACGAAC 3955019 28 100.0 32 ............................ GTATCAGCCAGCAAGTCGCCGTTGTCCTGATA 3955079 28 100.0 32 ............................ ATTCCGTAGTATTTCTGTTTCCCCACATTAAT 3955139 28 100.0 32 ............................ GCAAAATCGGTTGCCGGGATTGGCGTCCCGGA 3955199 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGTTTTTTATTTAAGGTGCATCAATGCGAAAAAAAGCTCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTAGAGTAAAACGGTCAAGAAGAATTTATAGAGATTGATTCGTTTGGTTACGCAATGAACACGCTGTTTGCGTGACGGAGATTATGATCGTATGTGTTCTGTTCAATTGTTTATCAAAAGCTATGCATAAAATATGAGATTGAAGAAGTACCAAATCGACCCTTTTTTTAGGTTGAAATGTAACTCATTGATTTTGTTTATTGCTTTTTTGAAGTCTGGAAAAAGGGTTCGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTTAACACATCATCCTCCAGTATTTATTCCCCATGACTCCAAACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAATTCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACTATAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //