Array 1 42953-44445 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVMK010000007.1 Escherichia coli strain UFMG-H9 NODE_15_length_196801_cov_4.417676, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42953 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 43014 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 43075 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 43136 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 43197 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 43258 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 43319 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 43380 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 43441 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 43502 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 43563 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 43624 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 43685 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 43746 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 43807 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 43868 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 43929 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 43990 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 44051 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 44112 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 44173 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 44234 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 44295 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 44356 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 44417 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70146-70663 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVMK010000007.1 Escherichia coli strain UFMG-H9 NODE_15_length_196801_cov_4.417676, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 70146 29 100.0 32 ............................. ACGTTGGTGATTTCGCTGTCGGGATCGGCATG 70207 29 100.0 33 ............................. GTCGCTGGCTAATCCATTTGTCGAGGCGCAAAA 70269 29 100.0 32 ............................. ACCTCCTCGTAATCCTGTCCCTGCAGAGCCAG 70330 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 70391 29 93.1 32 .A........A.................. CGATACTTCCGGATATCCGCAGTGATGTGGAT 70452 29 96.6 32 .A........................... GGATATAGAGCGGGTACTCGAGCGGAGCGGGG 70513 29 96.6 32 .A........................... TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 70574 29 96.6 32 .A........................... GACGCACTGGATGCGATGATGGATATCACTTG 70635 28 75.9 0 .A.........C..T....A..-.C...C | T [70654] ========== ====== ====== ====== ============================= ================================= ================== 9 29 95.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //