Array 1 245525-245753 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019687.1 Paenibacillus larvae subsp. larvae strain ATCC-9545 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 245525 30 100.0 36 .............................. TGGTGTGGGTGATTCCGTGTCCGTCCACCATTTGCC 245591 30 100.0 36 .............................. GGAAAAGTATCAGGCAGACGAATACCGAATCATTCC 245657 30 100.0 37 .............................. AGTTCTTCCATTTCCCAATACTCTTCCGTTTCCGTAT 245724 30 83.3 0 ......A........A....A.......CT | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 95.8 37 GTTTGATAGTAACACGAGGTGTATTGAAAC # Left flank : ACTCTTTTACTCATCGATGTAGCATATTGGATGTTAGCTCGTAACGTCTTGCCACGGCTGCTTTGTTTCTGGTTTCCAGAGCTTCCTTTACAACCTGTACCTTAAACTCGTTGGAATATTTCGTCCGTCTCATTTATCATCCTACCCTATTACTTGTAGTATAAACAAAACACACTTTTATTGTCCAAGTTCATTAGGGGGCTTTAGAACTAGCTTCTAAACATGGTAAATGCTAAGAGATGTATAGATTTTTATTAATTCCTTTTAAGAACTCATTACATATATTCAAAAATAAGTAGAAGAATAAAAAGCTTTATCTCTAATTTTCCCAACCTCTTTTACAGTGGTATTCGTCTTCAGCCTTAGAACCATAAGGATTTTTGCTCATTTAAGTTCATTTTATTTTAAGGTATATTTCGGTTGGGAAAATTTTGCGAAACCCCTGGTACTGTAGTAAAATGTGGACATACGGCTTTTGGAAAAGCTTGATTTTACTAGGG # Right flank : TTCGCAAGCTGTCTATCTCCACTTGGAGAGCACGGCTTGATAGTGCCATAAAAATAAATAGGCCATTCCCATTGGGACTGGCCTATTTTACTTACATTAATAGAGTAAATCTCTTTAAACAAATAAATAATGAAAATTTTATTTACAAATCAATTTTGTTTGGTATAATTTAGGGGGTTGATAATTAGAAGAACGTCCTACGTTACGGTTAGAGTTTAAGCAAATGAATAAATTTAAATGCGCCTTGCGCTAGGGTCCTCTTATTTTTTGATGTTTACTGTACTAGTGTACTATTTATTGGAATCCCTTTCAATACTAAAAATTTCTCAACAAAGGAGGTGAAAGAGATGTTTTACGAACTTAAAGCAACCGTGCTATTAAAACAAGAGGTCCATTACTTGCATGTACCGGAGCGAATTGGTTCCTGGATTAGCCGGGCGGCTCTAAATGATCCGGTATTAAAGCAGGAGCATTACTCGACAGGGTATAAGCACATTGTT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:0, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGATAGTAACACGAGGTGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 255304-255595 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019687.1 Paenibacillus larvae subsp. larvae strain ATCC-9545 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 255304 30 100.0 34 .............................. TATTGCCCGCCGCGTGGGCGTCGTACCTGCCCTT 255368 30 100.0 36 .............................. TGCAGTAGCGACAGTGTATTCAGCAGTTATAAGTAG 255434 30 100.0 36 .............................. TTCACACAGCCCTCCTCAAATTATCCGCCCTTTGGC 255500 30 100.0 36 .............................. TGGAGATGAAAGCACTTTGTGAACAAAAAGAATTGG 255566 30 96.7 0 ................A............. | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 99.3 36 GTTTGACAGTAACACATGGTGTATTGAAAC # Left flank : ATTTATGCCATTTTTGGAGAAAGACCGGAGGTAGAAGGAATATGGCTAAAAATTATCATTACGTCATCCTTGTGTACGATATTGGTGAAAAACGGGTGGGCAAAGTATTCAAAATATGTAAGAGATACCTTGTTCACTTTCAGAAATCCGTATTTCGGGGCGAAATTACGCCCTCCAATTTACTGAAATTGAGAAACGATTTGAAGAAGGTTATAGATAAGGATAGCGACTTTATCGCTATTTTTAAAATGACGGGTGACTATGTATTTGATGAAGAAGTTATCGGTGTAAGATCGAACAATCAGGAGTCTTTACTCCTCTAATTTTCCCAACCTCTTTTGCACTATTACTTGGCTTCAGTCTTAGAACCATAAGGGACTTTCACTCATTTAGGTTCGTTTCCTTTTTAAATCCATTTCGGTTGGGAAAATTTTGCGAAACCCTTGGTACTGTAGTAAAATATGCACATATGGCTTTTGGAAAAGCTTGATTTTATTAGG # Right flank : CGGCTGTGGGTGAGCCTGTCAATCACATACTTTGGACTTCTGTTAATAGATTGGACACCTAAAACCGAGAGAATTATGCAGCTAAACAGATCATATGTTCGCATTGATTGGGCGTAAGATACCCGATAGAGGAATGGATTCTTTTTCCATTGTAAAAGCACGTAATGTACTCAAAAATCTTCTCCTTGGCTTCTTTCCTGGTTTTGAATTTGTGCAGGTAAACGAGTTCTTTTTTCAGCACGTTGTGGAACGATTCAATACAGGCGTTATCGTAGCAATTGCCCTTACGGCTCATGTTGCCCGTCATGCCGTATTGTCGTAGCTGCGTTTGATAGTCCGAGGACGCATACTGGCTACCGCGATCCGAATGATGCAACACGGTTCCTTTCGGCCGTTGATGGCGGTACGCCTGATCCAACGCCCTCAGGCAGAGCTCCCTGGTCATTCGCTCGCCCATGTGAAACCCGACGATCTTACGTGTGCACAGGTCTTCCAGACTG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACAGTAACACATGGTGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 1191948-1191582 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019687.1 Paenibacillus larvae subsp. larvae strain ATCC-9545 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1191947 32 100.0 34 ................................ ACATCATCTGAAACACCCTCAGGAAACAATTCCT 1191881 32 100.0 36 ................................ AACAATTACAAATATGCAACTGAAGCAGATGTAAAT 1191813 32 100.0 37 ................................ CATCATCAAAATACAAACCGAATTGATTGCTATTCCC 1191744 32 100.0 34 ................................ GGATAATTTCCGAAAGGTTATTTTGGTTTTCAAT 1191678 32 100.0 32 ................................ CAATTAAGCCGACCGCCATATAGCGCGGCTAT 1191614 32 84.4 0 ...............A..AGT..A........ | C [1191586] ========== ====== ====== ====== ================================ ===================================== ================== 6 32 97.4 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : ATGCTAGTTTAACCATATTACATTTATTTTTTGAGGCATATTGACTAATAAATGAATAGGGAAGGTGATGGGAGGGCATTTGAATTGTGGAATTGGGTTTTCCATAGAGGTAAATATATGCCATGTTGGATATTTCTCGCGCTAGTAATGGAAGCTGATATGGGGTATTATGGAAGTGAAAAGGAGTGTACTTCTGTAATTGGACATTTGTAACTGACAAATGTTTTCATAAGCAGGTGATAGGGTAGATATTACGTCAATCGATATTAAGGCTAACGGGTGTAAAAGAAGTAATTGATTTGGAAGGTCTATTCATTTTCTAGTGCGAATGTATAGTGCACATGAAAATCCCGGGAGATTCGCACCATTATTTCACCAAAAATATACAAATATCTGGATATAGGTATATTTGATTGTAATAAATTTGAATCAAAAAATCATTGTTTGAATGATTTAATCAAAAAAATGTTCAATTTTGATTGTTTTGTTCAAATTTCGCT # Right flank : AAAAACTAGAGGCTTTGACCACTATCAACTGTGCCGTGCGATCGGACGGAACGACGCGAAAAGGCATCCTATTTTGTGAACTGCACCCTGTCAAGTAGACAGTACAAATAATAAAAATTAGTTAAGCGGCCTTGATCCTGAATTCCATCGGACTAAGGCCGTTTAATTTCGCTTGTAATCGCTCGTAATTGTAAAAGTAAATGTAAGCCTCAATGTCCCTTTCGAGATCTTCAAAGGTATGGTAAGTATGCAAATAATACTTCTCACATTTTAGGGCTCCCCAGAAGGATTCCATGGGGCCATTATCGATACATCTGCCAACTTGAGACATGCTCTGCATGATGTTTCCTTTCTCCAGGATCTTTTTGAATTTTTGCGAGGTATATTGAAAGCCCCGGTCACTATGCAGCATGGGCCTGCTGCCCGATGCCGCTTGTATCGCCTTGTTGACGGTTTGAAACACGAGGCCATTATTGTTGGAGTGCCCGAAAACGTAAGAC # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1194635-1194195 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019687.1 Paenibacillus larvae subsp. larvae strain ATCC-9545 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1194634 32 100.0 37 ................................ TATGACCGGGTATCTGCTGTTGCAGAAGCCGAAGGGT 1194565 32 96.9 36 ..................A............. ACGGTATGAATCGTAAGTCGCCTGACTCACGATATG 1194497 32 100.0 36 ................................ CGTTCTGTGGCCAGTGTCATATGGCGACAGGCGAAT 1194429 32 100.0 34 ................................ AAAAACCCCGATTATGTGGCGGCCGTCCGCACGC 1194363 32 100.0 34 ................................ CATGAAGTAATTGCAGTTTCGAACAACGCTAAAG 1194297 32 90.6 38 .........C.T.T.................. TATAGGTGTCACAATACCAGTCGTATCGTAAATTTCTA 1194227 32 90.6 0 .............T......A..........C | A [1194209] ========== ====== ====== ====== ================================ ====================================== ================== 7 32 96.9 36 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : GATTCAGAGGTTTTGGAGGTCTTATGAATGTTCCCAAAAAGCTTTTTTATATATTGCAATACCTAGTTCTTTTTATAAAAAAGCATTATCGACTTCATTTTTCAAAAAAAATGAGATTTTTCAGTGACGAATTTACTTATTACCTACTAACATTTGCAGAATGTTAAGCACATGCTTCACTTTGTCAGAAACTTTTTTTAAATGCGCGTTCCCTTTAACCATTTTTTGGTATCCACTATTCTTGAAATATGTTCTTCTTCTCCTTTTATTCATCTCCTACCTTTATAAAGTGAAGGAATTCAAAATCCTGCCTATTAGAACATGGATGCATAAAGTGTTTATTAAAGATGCGTTATTTGAGTTAAATGGAATCATCCTGATTCTAATCAACTTAGTCATATTATTAGAAATTAAGGTTTTAGCTATTCTCCTGTTGCTTTTTATTTCTCAGGCTTGGATGGGCTTTTTCCAGAGCGCGACGTGCGTCAATACGAGTCAAT # Right flank : TTCCGATAAATCCTACTCAAAATGCTCTTTTTGGTTGTATTTGATTTTACTTAAAATGGACCGGCCTTGCCTAAAATAGGTTGCTTCAGTTTTCTGTTTTATCTCAGATCGAGCCGGCCACTTATGCTAGAAAAACGTTTTCACCTGAAGGGAAATTTATCAATTCAACATAAATCTTGAAAGACCTAAGTAGGGGATAGGACATGGTCTACAAACTGTTTCACAAATTATTATTTTGGAAAGAAAAAAGCCGAATAATCAGTTCCCCACTTTTACAACTCAAAGAACAAACCCGTCATATCCTTTTATACCTACAGTTTGAATAGCAGTTGAATCTATATGTGACTCTTCATATGACAAATCAATAAATTGACGAACCTCATGCACATTTATGTCATCACTGTTATTCTCAATTACATCTTCATTGTGTACATTATCCCCAATAATTAATAACCGTACCTGGTCTGGAAAGCCAAGGGCCCATTTCAGATAGTAGGGGT # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //