Array 1 24456-20930 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGKQ010000032.1 Halorubrum alkaliphilum strain DSM 23564 Ga0451174_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 24455 30 100.0 37 .............................. GGCGCACGGCCGTTGCTCGCCGTCAAGTTCAAAGGCG 24388 30 100.0 37 .............................. AACTCTTTACCGGCGATAGCACAACCCGTGAAGCATC 24321 30 100.0 36 .............................. GGGAATTAAGCACAACGGCAACCGACACGGATAGCG 24255 30 100.0 37 .............................. GCATACGATCCGAACGGATTGAGTGTATCAGCAACCT 24188 30 100.0 36 .............................. CCCAGATGAGGGATTGACTGCTGACGCACTCAGACA 24122 30 100.0 37 .............................. CCGTTGCGGGCGTTCAAGATGCGAGCGTAGCACTCAC 24055 30 100.0 37 .............................. CGTCTCGACGTCGCTCCAGGCGTCGCGGTAGACGACG 23988 30 100.0 37 .............................. CCGAAGGCGTCAGACGTGTCGAAGACGATCGACAAGC 23921 30 100.0 35 .............................. GGCCGGCTTGAAATCCAGTTTGAAGACACCGAATA 23856 30 100.0 35 .............................. GGCAAGCACGCTTGTGGTCCGTGTACGACCGCTTA 23791 30 100.0 35 .............................. GGATAGTATTCGTCTCCCTGAGAGAGATCGAATCC 23726 30 100.0 35 .............................. TTGTGTGCCGCTTTTGAGCACATAGCAGTCTTTGT 23661 30 100.0 37 .............................. AAATAAGCCGGGAAACATCAAGCGTGGACTTATCGGA 23594 30 100.0 36 .............................. ACCGGGATCGTGGAGACTTCCCGGTCGGTGAAGACG 23528 30 100.0 36 .............................. CGATGCCGATCGATATTCAGGGGATGGCTCTTCCAA 23462 30 100.0 36 .............................. CTCGCCTAAGCCGTGACGCGCCCCCCGTGCCAAGAA 23396 30 100.0 35 .............................. GACAAGGAAACGGCGGCAGCCCTGCTAGCGGCGTG 23331 30 100.0 37 .............................. GACCCATGACTAAGTATATTAGCAGCAAAGGCGCGTG 23264 30 100.0 36 .............................. CGCGGTCACGACCAGCTCATCGTAGTCGCGATCCGC 23198 30 100.0 35 .............................. TCTAAGAGGTGGCCCATGCTCGCGATCGGTCCGTC 23133 30 100.0 35 .............................. AAGTCCTTAACGGCTCTCTGAGTAATGATACTCAT 23068 30 100.0 36 .............................. GCTTCGTAAGGTGCGCGAGTGTCGCGGTCAGTTGGA 23002 30 100.0 34 .............................. ATCTCGATCGCGGACGGCGGCGACACCGACTCCG 22938 30 100.0 36 .............................. GAGGATGACGCCGAGAGCGAGGAAGACACCACGGTT 22872 30 100.0 35 .............................. TACGAAACGCACGACCCCGACGCCGACGCGCCCGA 22807 30 100.0 37 .............................. GACGACGGCCTCCACGCGCTCGCCGCGCACGCCCGCG 22740 30 100.0 35 .............................. GGCCTGCTCGCGTGCGCCGAGCATCTCCATAATCG 22675 30 100.0 37 .............................. GACTTCCATACCTTTCCACCGGGGGGCGATATGTGCG 22608 30 100.0 36 .............................. GCGCATACCGGCCTCGCTGCTGAGTCAGATCGTGGC 22542 30 100.0 37 .............................. CGCCGGCAGTTCGGCGGTGTGCTCGACGACATCCGCG 22475 30 100.0 38 .............................. GGCGACGAGCGTGTCCTTCTCTTCTTGCGTCAGATCGC 22407 30 100.0 36 .............................. TCCGACGACTGACACCGAGATGCCACGCCACCACAA 22341 30 100.0 35 .............................. GAGAGGCGGTCGCGTACGACGGCGCAGACCCCGCC 22276 30 100.0 36 .............................. GTATCGTCCTGTGGTTCCGTCGAGGTGAACGACGCC 22210 30 100.0 36 .............................. ACGCATTAAACGACGGAGAAACCCAAGAGAATGTTG 22144 30 100.0 35 .............................. CCGACGGCCGGCGTCTGCGTGTTCACGACCGACGG 22079 30 100.0 35 .............................. CGTTGCGGTGTTCACGGGAGGATTAAGCCGGTATG 22014 30 100.0 36 .............................. AAGATGCGGGGCGGGGCGATCCGCGGCCACCTCCGA 21948 30 100.0 35 .............................. GTCGAGTTGGTCCGCGAGCCCGTCGATGTCGTTGA 21883 30 100.0 34 .............................. GAGGTGATCGTCGCCGAGGACGCCGTCAACGAGT 21819 30 100.0 37 .............................. GGCAACCCGCTCGAAGTGTACTACGCACCCGACGACC 21752 30 100.0 36 .............................. CACACCGTCAGACAGCCGGTGAGTTACTCATCGAGA 21686 30 100.0 38 .............................. TCACGGAGCGACCGATCCGACGTGATCGAGATCTGCGC 21618 30 100.0 37 .............................. GTCAAGAAAGTACGCGATGGCGAGGAGGAGGACAACG 21551 30 100.0 36 .............................. AGACGCGAACGCAGGTGAACACCAATGAGCTACAAC 21485 30 100.0 37 .............................. GACCGGGGCGACACCGTAGAGGTTCAGATTTGGAGCT 21418 30 100.0 36 .............................. GTTGATAAGCGATACGGGGTCGTCAATAACGAATAA 21352 30 100.0 37 .............................. GACCGGGGCGACACCGTAGAGGTTAAGATTTGGAGCT 21285 30 100.0 36 .............................. GTTGATAAGCGATACGGGGTCGTCAATAACGAATAA 21219 30 100.0 34 .............................. CCGTGAGTGATCTCGCCGTAGTACTCTTCGAGGT 21155 30 100.0 35 .............................. GCGGTGGGTGTCGAGACGGCGGCCGAAACGTCGTT 21090 30 100.0 36 .............................. CGTCGCTCTCCACCCGCACTTGCACGCCTAACTCCT 21024 30 100.0 35 .............................. GTCACCCACAACGACAAATAAGATCATCTCTGAGG 20959 30 86.7 0 ......................C....TTA | ========== ====== ====== ====== ============================== ====================================== ================== 54 30 99.8 36 GTTTCAGACGTACCCTCGTGGGGTTGAAGC # Left flank : GCGACCTTCCGGTCGCACGCCCAGCTTGTTCTCCACGAACTCGGTGAGTACCTCGGCTACTCACCACCACCGTTGCTGGAGCGGCTCATCGAGGACGCTCAGAAGATCCATCAACAACGACCGATCTTACAAGAGACACTTGCTACCGCTACACAACCGAGGTGTGAGTCTTAGCTAAAGACGAATGCTGGTTGG # Right flank : ACTCGAATTCTCTATCCCTTGAGGCTTACACTGGCTGATCTACCAATCCCATAAGTTGCTCTCCAAATGTGTCGAGAAGGAAGTGGTATACACGGAGCCGCGTAAACCCCCTCTTGTATAAGTAGTGTTTGCGAATACGAGAACATGACCGAGGATGGGCCTGAGACCATCGCGATATACGCCCGCGTCTCGACCGCCGACCAGGACGCGAGCCGGCAGCTCAACGAGCTCCGCGAGTGGGTCGCCGATCAGTACCCCGACGCCGAGACCGAGGAGTACATCGACGTCGTCTCGGGCGCGGCAACGGACCGCGCCGAAGAGTACCACGCGCTCCGCGAGACGATCTCGGAGGGCGCCCTCGACCTCGTCGTCGTCGACGAAATAAGCCGCCTCTCCCGGCTCGGGGGCGGCGAGATTCACGATTTTATACAGCACGCGCTTCAACACGACACATCCGTTCGCGACCGGGAGGTCGGCCTCTCGATCGACATCGGCAGCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGTACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 6363-7248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGKQ010000043.1 Halorubrum alkaliphilum strain DSM 23564 Ga0451174_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 6363 30 100.0 35 .............................. GACCGCCAACTGACCGCATCTCGTGACCACACCCA 6428 30 100.0 36 .............................. GCTTTTTAACGCTTCCACCTCCTCGGCGAGCTCCTG 6494 30 100.0 39 .............................. GTCTCCGGCGTCGAGACGATCACCGAGGTCGGCCCGGAC 6563 30 100.0 36 .............................. GTCAGCAAACACCTTGTGGGGGTCGTTCCCAGCCGC 6629 30 100.0 37 .............................. TGGATCCGCCCGGGCTCAACGGCGGGTTACCACAACG 6696 30 100.0 34 .............................. ACCTTGGGCTACCTGAAGGTTTAATCAACCGTCA 6760 30 100.0 36 .............................. ACCGTCACAGGTCAACCCCCTCGTACCCGTGCGCTT 6826 30 100.0 37 .............................. GCCGCGTCGTCGAACGCGTCACCGACGCCCAGACCGG 6893 30 100.0 37 .............................. CGTTTGGCGAGCGGCAAAGCGCGTCGAGCGGCAGGCG 6960 30 100.0 35 .............................. AAATGGACTCCGTGCTTCGGCCCGTCTTAAGCCCC 7025 30 100.0 32 .............................. GGCTCCGGGCGACGGGAGTACGCGACGACGCC 7087 30 100.0 37 .............................. GACGGTGAGGAGTTACGCGGCGACCCGTCGACGACGC 7154 30 100.0 35 .............................. CTCGACCACGGCGGCACGCACTACGGCGGTGCGCG 7219 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 14 30 100.0 36 GTTTCAGACGTACCCTCGTGGGGTTGAAGC # Left flank : TCGAGTCGAGCTACCGATTAGCCAAGCAGAGCCTCGCATTCACCAGTTCTCAGGACGCTGGGCTACGGCTCGTGATGTTTGTGGTGAGCCTGCTGCTCCAGAATAGCTGGCGATATCTCCACTGGAAGTACGTGGCGGCGCCCCGCCGCGGGGGGCGCCGCCTCTGGAACTGGTCGTTCACGGAGTTCTGCGAAATGACGCTTCGCGCAGCTTGGACAGCACTTGGTGTGCGTAGGTCTGTTCCAGCGAACCAGTCACTTGACGACCGGTTCTTCCGGTAGCTGTCCACCGGTCCGGACAGCGGTCGTGAGTGGCGACGCCGTCGCGTCGGCGGCAGTCCGCCGCCGACAGCGACGATCCATCCCAAAGATCACTCTCACCAGCGCTTCGAAGACGCTTCACGACCAGTTCGATCTGATTCATCGGCATCAGACGAGATTACGCGGCTGTCGATGTGATCGACTGAGGCTGCGGACGAGGTCGCGCTCGGAGACGCGCAC # Right flank : CAAAGGCGTCGGCACGCGCACGCGTATCTGGTTGGTGTCATCTGTCTTTAGTTAAGCCTCACACCTCGGTTGTGTAGCGGTAGCGAGCGTTTCTTGTAAGATTGGTCGTTGCTTGTGGATCTTTTGAGCGTCTTCGATCAGCCGGTCGAGCAGCGGCGGTGGTGAGTAGCCGAGGAACTCACCGAGTTCGTGGAGAATGAGCTGGGCGTGCGACCGGAAGGTCGCCGCCCAGCGCTCTGTCGGAAACACAAGCTCATCATCCGCCTGCTCGGTGATAAGATCCAACAGATCGCGGCTTACAAGCAGCGACAGCAGCGCTGCGTACAATAAGATCCTCACCACGTGTTCGTCACTCGTGTCGAACTCGTCCAGTTCGTACTGCGTCTTCAGCTCCCGGAACAGCAACTCAACTTCCCACCGACAGCGGTAGATCTCCGCTAGATCTGCCGGAAAGAACTCCTTCCTCGCTAAATTCGTCATGTACAGGTGGTAGTCGTCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGTACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //