Array 1 1569684-1567520 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003183.2 Granulibacter bethesdensis strain NIH2.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1569683 29 100.0 32 ............................. TCATCGAGGGTGGCGTACGCCATCAGGGCACC 1569622 29 100.0 32 ............................. ACCGGACTGATGCCGCGATAGGCGGCATCGCC 1569561 29 100.0 32 ............................. AGGCTCCCCTCGGCGCACTGCGCCAGTTGAGC 1569500 29 100.0 32 ............................. CCGCCACCAGCCGGGACACTCACACGATCAGC 1569439 29 100.0 32 ............................. CACCATCAGTATCCCGGCCGATCGCGACATTC 1569378 29 100.0 32 ............................. GACCGACCAGCCCTTGCCGATCGCATCCAGCA 1569317 29 100.0 32 ............................. TCCGGCTATCCTCCCGCATCGCATGCAGCGCC 1569256 29 100.0 32 ............................. CGGTCCGCCGCCACTGGCCCCAGTCCTGCAAG 1569195 29 100.0 32 ............................. CAGCTGAGCGATATGACAGAGCTGCTGGTCTC 1569134 29 100.0 32 ............................. CAGCCCAACAGATCGCATGAGGTCTGCATTTT 1569073 29 100.0 32 ............................. TTCTGAATCTGTGACTTCTCTCATGAGAAAAC 1569012 29 100.0 32 ............................. GCGGCTGATGTCAGGATGGCTGATATTTTTCC 1568951 29 96.6 32 ............................A TGCAGGCGATTGATCAGCACTCGGTTGTGGTC 1568890 29 100.0 32 ............................. CGCCGCTGATCATATATCGCAGCGCGGTCCAG 1568829 29 100.0 32 ............................. ATCGCTCGATGAACCGCCGTTCTTGGCTTCGA 1568768 29 100.0 32 ............................. TCTGCGCAGCCACCCGGAACCGTATTCTGAAA 1568707 29 100.0 32 ............................. GTGCCGAGGCAGGTCGTGAGACCGGTTACGGT 1568646 29 100.0 32 ............................. CCACCGCGCGCCAGATCGAGCAGCTGCGCATT 1568585 29 100.0 32 ............................. GTGGAAATAGGCCGTATGCGGGTAGGAAAACG 1568524 29 100.0 32 ............................. GCCGCCACAATCGGTGCTGGCAGCAGCTCAGG 1568463 29 100.0 32 ............................. ATGCTGCTCCTGGATAGCGGATGGCCGCCTCG 1568402 29 100.0 32 ............................. GTAGAAATGCGATCTACATTCATCGGCTCAAG 1568341 29 100.0 32 ............................. AAAAATTCGAATTCTTCCTCGTCGCAGCAGGA 1568280 29 100.0 32 ............................. CGAAAACCCATGACGGGATTTTCGCAAAAATA 1568219 29 100.0 32 ............................. TCGCTGACTAATGGGAAAAAAAATAGAGTCTC 1568158 29 100.0 32 ............................. ACCTCTGTATCTAAGAAAGAAAGGGGAGCGCC 1568097 29 100.0 32 ............................. GTCCAGCACACTCAGCGCCAGCGCCCTGTATC 1568036 29 100.0 32 ............................. GTGCGGCCGTGATAAAAGCGCGCGTCGCGAGT 1567975 29 100.0 32 ............................. GCATCTTCTGTCCTGGATGATCGGTCGGCGTT 1567914 29 100.0 32 ............................. CCGCTACAGGGCGCTTCCCACCGAGCATTTTT 1567853 29 100.0 32 ............................. CGCCCATCTGAACATTTTACGAATGCGTGGAG 1567792 29 100.0 32 ............................. CAGTCGGTGACTGCTGATACAGCGACTGCGAT 1567731 29 100.0 32 ............................. GGCTGGTCGGTCCATGAAATTATTTGGCAAAT 1567670 29 100.0 32 ............................. ATTTCCGCCATTTATTTGCCTTAGTCGGCGCT 1567609 29 100.0 32 ............................. CGACCAGAACAATACGACGCATCATGTCACCA 1567548 29 96.6 0 ........................G.... | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.8 32 GTGTTCCCCGCCTGCGCGGGGATGAACCG # Left flank : TCGGACGGGACTTCTTGGACGTATTATTCCCGCGATTGAGGACGTTCTTTCCGCTGCGGACATTCCCCGTCCCGAGCCCCCACCCGAGGCTGCTCTACCCGCTTTTGACGAAGAAAAGTCTGGCGATGAGGGCCATCGCGGATGATGGTTGTGGTTGTCACCAATGCGCCGCCACGCCTGCGTGGCAGACTTGCTGCATGGCTGGTTGAAGTGAGGGCCGGTGTCTATGTCGGCAACTATTCGGCTCGGACGCGTGAAATGATCTGGCGCCAGGTGACGGAAGGTCTGGAAACAGGCGACGCCGTCATGGTGTGGAAGGCCGCAACGGATCAGGGATATGACTTCCTCACTTTTGGTCGCAACCGCCGCATGCCCATTGATTTTGATGGACTGAAGCTCGTAACTTTTATTCCTGAAAAGTCGGCCTAAAAACCTCTTTTTCTGTCGGTAAGATCTTTGACAATGTAAAAAATATTTTGAATCAATTACTTATGCGAAGA # Right flank : ATTTGCCTGTATGGGCTACTTGGCGCGTTCATCCTTTCATCCGGCTGATGCCATTGTTGGCTGACGCCCTTCATGATCAGGTTCTCGATCGTCGCATGGCCACCAGCAACGATATCCGCGCCACGTTCCTTAACTACTTCGCCCGTAACGGGCATGAGGTGGTCGACAGTTCTCCGCTTGTGCCGCGTAACGACCCCACACTGCTGTTCGTCAACAGCGGTATGGTGCAGTTCAAGAACGTGTTCACAGGCCAGGAAAGGCGGCCTTACAGCAGGGCCACGACCTCCCAGAAATGCGTCCGCGCCGGGGGGAAGCATAACGACCTCGATAATGTCGGCTACACCGCCCGGCATCATACTTTCTTTGAAATGCTGGGTAATTTCTCCTTTGGCGATTACTTCAAGGAACAGGCGATCACCCATGCCTGGAACGTCGTTACGCGCGAGTTCGGTCTGCCGGCCGAAAAGCTGCTGGTCACGGTCTATCAGGATGATGACGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCTGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCCTGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1578920-1578648 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003183.2 Granulibacter bethesdensis strain NIH2.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1578919 28 100.0 33 ............................ CTGCATCAATGTCGATGCCATCAGAAACAACAC 1578858 28 100.0 33 ............................ CCCCGGCTGCACGAGCAAAATTTGTCGCGTCAA 1578797 28 100.0 33 ............................ CGAGTTGCGCCCGGTTTCCATCGTCTCGGCCGC 1578736 28 100.0 33 ............................ TGGATCTGTTGATGAAGCGCGTGGGATAGCTGC 1578675 28 92.9 0 ..........T..............G.. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 98.6 33 GGTTCCCCCGCGTGCGCGGGGATAGTCC # Left flank : TTGATGCCGCAGCGTGCCCGCTGGACCGGGCTGACGTTGAACTGGTTGAGGTGGCGAGGGCGGTCATGCGGCAGCATTATCGCCCATTATGGCATACGGTGGCAGCTGCTTTGCGGGATGCCAATGGCCGTATATGGACCGGCCTTCATCTTGGCGCGACGGTGGGGCGTTTGCAGATTTGCGCAGAAGCGATTGCACTGGGCCGGGCCAAGCTGGAAGGGGCGGCTGACATCGAAACGGTGGTTGCCGTCCGTCATCCCAAACAGGATGAACCCGATCAGGATATTGCCGTTGTCTCCCCTTGCGGTGCATGCCGGGAGATGTTTGCGGATTTTGCCCCTTCCACCATGGTCATTGTTACGGGGGAGCAGGGGTTGATCAAGGTGCCGCTTGCTTTGCTTCTCCCCCTTCCTTACCGGCGCTGAAAAAGCCGGCTTGCATTTTTCTCAAAATGTGGAAAATAGGGATTGTTCTTTGAAATCAATAATATCAGCCCTAGA # Right flank : TTTTAATCGAGAGCATGTGGGCGCAGATGGCCACCATGAAGCGGCCGATGCGGACAGAACTGTAAAAGACTTACTGCAAGACGCTGCTGAACACCTGTTCCGGCATCCCTATACGAAAATCGAGTCTGTTCAGTCCGACTTGGGCATAGCGCGTCAGACGGTGGGTAAATATGCCAATCAGCTTTCGGAGAAAGGTCTACTTTCCAAGCACCGTTCAGAGCGTAGCAACTATTATATCAACGCACCTTTGGTCCGCCTCTTCCTGAGAAGTGTAGGGTGGTGCATGCTCCAGGATTGCCGAAGCACCTTTTAATCCTGTGTCTTTTATATTGCCGTAATTTTTACCTATCCATGAGATTAAACATCTCCGGACAGTTACGTTGATGGAGCTGCGTAATGCAGTGGAAAAACTGGCCGGGTAAAAGCTCGGTCACTCCGGATGGTCCTGAACATCCGGCAGCCTTTCATATGCTTGATGTTGCTGCGGTGGCGGAAAGGCT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCGTGCGCGGGGATAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 1879389-1879722 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003183.2 Granulibacter bethesdensis strain NIH2.1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1879389 29 96.6 32 ............................C CATTCCAACGAAACCGCGACCTTCGCATTTCA 1879450 29 100.0 32 ............................. AATAATATCCTGTAGACAATACTCGTGCAGAA 1879511 29 100.0 32 ............................. CGTCGATGCGATGACGGCAGGTCTGCCGACAA 1879572 29 100.0 32 ............................. AAAATGACGTCGGTCACGACGCGCCCGCTCTG 1879633 29 100.0 32 ............................. TGATGCGATCCTCGGTCGGTATATCACCCTGG 1879694 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GGTCTATCTCCGCGCACGCGGAGGAACCG # Left flank : AGATCGGCATGGGCGAGGTGGCTGAACATACGCTCCTGCAACTCCCTGATGACGATCAGCACCAGTTGCTGCATGGAGACCGTCTGCCCATACATCGCCGCGCCCTTGATGGCGGTGACGATCAGCACCAGCACCGGAATCTGGTACAAAATCCGCCGGTCACGGGCATTGAACAGGTCGATCGCATGCTGGATCACCACCGGATACAGCGCCGTGCTGCCCGCCATCAGCGCCGTCAGCAGGATCACCACCAGCATACGAACACGGTGATGCGCGATATGCTCCCGCCACAGCCGCCCCATCATGGCGAGGGCGGTCGGCTCCAACTCCACGTTGATCTTCCGCGCCCCTTTACCTCTCCGCTTTGGCGGAGCGTGTGGGGGTGGCGACTGATCCGTTACCTGATCGAGCGGGCGTGCATCCATGCACCCGGGTGTATCAGGCCGGGGGGCGGTTTGCACACCCCCGGCGGGAGAGTAGCGATCCATTATGATGAGTGA # Right flank : TCTTGCCTACAACACATTGATACTTATTGACAATCTCAAAGAACACAATGTTTCAGAAATTAACTTCTCTGAAGCAGCAGTACTCCACCGGCATCGATAATGTCCTTCGGAGCATCACAATCAGAACAGAATCAGGTTAGGAGCTATACCAACCCTGCTCCTCTCCCACTTCCTCATGCAGAATTAAAGACGCGTCTGATCGTCTTCTGCAACGGGTGCAGGATTAAAAAGGGGCATGAGAAGATTGGCTCTCTATACGCTCACCCGTTGGCGGAACATCCAGAACATGCTTGGCAATCATTGATGGAACAAAGCCCGGACGAACTGCATGAAGCGCAGGCTGCGCAAGGATATATTAAATAATCTGCTCCACCCTCCTGACATCAAAATCGATTTTGTGCGGAAAGACCTTTCCACTTTCATTACCGAGAGCACCCAGATGGCTTGAAAGCCGGACCGAAAAGGGATTTTTCTTCAAACATCAGACCGGACGCAGCAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCTATCTCCGCGCACGCGGAGGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.00,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 4 1959830-1960894 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003183.2 Granulibacter bethesdensis strain NIH2.1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1959830 28 100.0 33 ............................ TGTGTGGATCGTCACTGGCGAGCCGCTCATGCG 1959891 28 100.0 33 ............................ TCGTCATTATATGCATCCATTCAAGGAATAGGG 1959952 28 100.0 33 ............................ TCATCCTCATCGTTGTCCCCGGTCGTAACAGAC 1960013 28 100.0 33 ............................ TGAGGGAAACCGTGTCCGGTATGATCGTATCCA 1960074 28 100.0 33 ............................ CCCGTATTGGCGAGGTGCTGGTCGCTCGGACAT 1960135 28 100.0 33 ............................ CCGACGTGCGGACCAGAGTGCGGACTCTGCGGA 1960196 28 100.0 33 ............................ CTGCATTCTGATAATGCGTTGGGTCTATAGCGC 1960257 28 100.0 33 ............................ TCTTTCTATTACCCTCTCGCGCTGCCCATCTCA 1960318 28 100.0 33 ............................ TTGGTAGCCGGGGAGATTCTCAAGGGCTGCTTG 1960379 28 100.0 33 ............................ CGCCGCCATCCTCAGTGCGCACACCGATAGTTG 1960440 28 100.0 33 ............................ CTGGCGCAGCGCGCGGAGTACAGACGCCTGGCG 1960501 28 96.4 33 .............A.............. GCGCCCTGATTGGATGGCTGTGCAGGATTTCCT 1960562 28 100.0 33 ............................ TGCCGCCTGTTTTCTCGCGCAGCCGGTTCGTGC 1960623 28 100.0 33 ............................ CGTCGCACAGATCATCAGCAGCACGATCTTCTT 1960684 28 100.0 33 ............................ CAATACTCTCGTTACCGACGCCGGACGGATTCT 1960745 28 100.0 33 ............................ CGGCAAAATCGTTCGTCTCGCCGACGAAACCGT 1960806 28 100.0 33 ............................ TCATCCCATGTTATTGGCGATCCTATAGCAAAA 1960867 28 92.9 0 ..........................TT | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.4 33 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : GGGTCATGAAAATATCGAACGTCTCACCCGACGCCAGACTGGACGCGTTCTGGCAGAACGCTCCGTCATTCCAAAAATGATCGAGCGACTCAAACAACTTTTCGAAAAAGAAACGGAGGCCATCCCATTTCTCGAGGATGATGAATGATGCCAGCCACTCTGGTCATTACAAGAGATGTGGAAGCACGCTATCGCGGCTATCTGACCTCGATCATGCTGGAGCTTTCTGCTGGCGTTTATCTGTCTCCCCAACTATCCTCGGCGGTGCGTGAGCGCACCTGGGCGGTGCTGTCGGAATGGCATTCCGAACTGCGCCGTGGTGCTATCGTGCTGGCATGGCCCGATGCCAAATCCCCCGGAGGCATGGCAATCCGCACCCTTGGCGACGCTCCCAAGGAGATTGTCGATGCCGACGGGGTGCTGCTCGTTCGGAAAAGTTAATTTTAGAAACATATCGTTCTTTAATATTGTCAATAAGTATCAATGTGTTATAGGTAAGA # Right flank : TCTCGGCAATGTCTGCGAGATGGCGGAGAGGGTGGGATTCGAACCCACGGTACCCTTTAGGGGCACAACGGTTTTCGAGACCGTCACCTTCGGCCACTCGGTCACCTCTCCGTTCGGGGTCTCTTAGAGCAGGCGAAAGCCCGCGCCAAGAGGCTGTAGCAGAAAGATGCCCCCTTACCTTCCGGCCCGGTTCCATCCAGCCCGAGCCCGAATCGAAGCCACGGCAAGCGAGAAGCCCCTATACCCGCTGAGCAAACACCTCCTTCGGGCTGCCGGCACGGCAGATATTTCATGAAAATGGGAGCCATGCCGCAAGGAATGTTTGACTTGTGGCGTATGACCGGTATAACCCGCGCCTCTCGGCCGCCGTGCCTCCCGCTTGTCGGGGTGTTCGGAGGCCGCTCGGCGTTGACGGGATGGCTCCGTCGTCGCGGAGCCAGCATTTGGGACCAGAAGCGATGTTCGCAGTTATCCGCACTGGCGGAAAGCAATACCGTGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //