Array 1 49890-49742 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSF010000012.1 Gilliamella sp. M0364 NODE_12_length_50185_cov_247.363533, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 49889 28 100.0 32 ............................ ATTGACGGCAGAGAAATAAAACGAGAATGGCT 49829 28 100.0 32 ............................ TTGTCACCAAACTCATCTGTCATTATCTCGGT 49769 28 78.6 0 .................CTTT....TT. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.9 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : TTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCGCAAAACAACAAAACGTCCGAAACTCAAACAACCAAAAATTTTGAGGAGAGGGGTTTTTAAAGCCAAAATCCATCCCATAACTAACCCTTTTTTTAACTTAAAATAAAATTATTAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGAGTTTTTAATAGTAAAATTGCGCTTTTTCTTTTTGCCAACTGCATTTATAGTATATGGGATTCT # Right flank : GTAATTAAAATGGATTTTTAGTATTTAAAACTCGCTATTCTCAAATTTATCTATGAAATAATTAAAACGCTTATATAAGCGTTTTAACTCTGATTAATATCATTATATCTACTATAAACTATTAGAACATTAATAGTTGTACAATTAAATTGCAGTCATATAGACCTGATTATTTAGTAAGTTTTTAGGATCAAACTGTTGTTTAATTGCACGCATTAATTGGCGATTTGCTTCAGGAATTGCAGCATTGTAATAACTTACTTTCGCCGTTCCGATGCCATGTTCTGCTGAAGGCAATCCTCCTAATTCAAGACATTTTTGATAAAGCGCTTGGTGAACATTTTGCAGATCAGATTGCCATTGTTTGTCATCACGATTATCACGCAAAATGCATAGATGAATGTTACCATCACCAGCATGACCAAAGGCTAACATGCGCATTTGAGTTTGTGCTTCTAGCTGTTTGGTGAAATTGATAAAATCGCTAATGCGATTTATTG # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16875-17380 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSF010000014.1 Gilliamella sp. M0364 NODE_14_length_35238_cov_243.586067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16875 28 100.0 31 ............................ TACTCCTGCTTGCACGTAACTTATTAATGGG 16934 28 100.0 32 ............................ AGTAGGAATCCATCAACAAATTCAACAAAATG 16994 28 100.0 32 ............................ AAAAAAGTAGCTGATGCTTTGATGATAAGTCC 17054 28 100.0 32 ............................ AAGCTGATGTATAAATTGCAGTGCGTTTGATT 17114 28 100.0 32 ............................ TATTCTGCGGTGGATCGTCGTAATTTTGTGTT 17174 28 96.4 32 ...............A............ ATGTGTGTTTTTTTAACTGTAAGACCTGAATT 17234 28 100.0 32 ............................ TCAGCAATAATTGGTTCTACACTTTTAGGCGC 17294 28 100.0 32 ............................ ACAACACCAGGTCTAAAAATTCGCTCTGTCGG 17354 27 92.9 0 ....................A...-... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.8 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : AGGTATTGAAGCCGAGGATAAGAAAAATAACGTTAGGGCGATAAAAACGATTTTGTGGCGCGATATTAGCAACGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAAAGCGAACGAAGGCGGAAGGCAGTCACGCAGTGACCACTTGCGTAGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTTACTCGGACGTAATCACCGTACAGAAATAATCGCAGAACAACAAACGTCCGAAAATAAAACAACTAAAAAATTTTGAGGAACGGGGGTTTTTGAACCTTAAATTCCTACTTATTGCTAACCCTTTTTTTTGACTTTAAATAAAATAATTAAAAATCAATATGTTGAAAAATAGCTTAAAAAAAGGGTTTTTAATAGTAAAATTACGCTTTTTCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : ATTAATTAAAATTATAACACTCGAAATCCACCAAACTAGAAAAGTTTAGTAAAGGAGTTTTTTAGGTGAATAAATTCACCACATGTTATAATTATGTTTAATTATAATTAACTCTGTAAATATGATGAATAATAGTACAATTGATAACCAATTAAATGAAAAAATGGTGCTTATTTTCAAAGCATTATCTGATCCGGTTAGAATAGAAATCATTAAATATTTAAAAAGTATAGAAACAGAGGTTATCTGTGGTGAAATTGGTCAAGCAGTTGGTATTAGTAAACCTTCAGGAACTTATCATTTTAGGTTATTACAACAAGCAGAATTAATTAACGTAAGAAAGAGTGCTAGGGAAAAATATGTGTGGCTTAATAAATCAACATTTGATAAATATGTTACCGGGTTTTTTGATAATCTTTAAAATACTCAAATATTGATTTATTGTTGAATTTATCGCTTTGATTTTATCAAATATTATTTTTTATCCTTTGCTGTTAACC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10981-9452 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSF010000002.1 Gilliamella sp. M0364 NODE_2_length_355983_cov_268.782913, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10980 28 100.0 32 ............................ TGAACAAAAGCGAGAGTATGAGCGTTATATGT 10920 28 100.0 32 ............................ GCGTGACGAAATTCGGGGTATGATTGCTCGGA 10860 28 100.0 32 ............................ TTATCCTCCAACGGTTAATCATTATTGGGGAA 10800 28 100.0 32 ............................ AGTTTGAGATGTTATCTTGAATATGTTCCCAT 10740 28 100.0 33 ............................ AGTGAAAACTAGGCAAGCTCGACAAGAACAGAT 10679 28 100.0 32 ............................ TTTTCACGTCGAATTACTAATCCGTTTAAAAC 10619 28 100.0 32 ............................ AACAAAACACGGATTACCTGTATAGTGTTCAG 10559 28 100.0 32 ............................ ACCAGCGGCACAAAATCTTGGCGCTTCGATTA 10499 28 100.0 32 ............................ ATGGTGTACCACCGATTTGCATCATTCCGTTC 10439 28 100.0 32 ............................ AGCCACGTTGACCCAGCTGTCAGATCGATTAT 10379 28 100.0 32 ............................ GCCTCGGCGGTTTTTTGTATCAACAAATTTAT 10319 28 100.0 32 ............................ GTTTGGCGCGGTAATCGGTGAAGTTTTTCGAT 10259 28 100.0 32 ............................ AAATCCCCCCGTATTTTTGGGTGTTATGCCCA 10199 28 100.0 32 ............................ TCCGTGGTGTAGTGGTCTTGCCCTGATTGGTC 10139 28 100.0 32 ............................ TGCAGCAGATGATAGCCTGTGCCTGAGTGTTT 10079 28 100.0 32 ............................ GATTTAGTCGAAAAGGATTTAACCCAAGTTAT 10019 28 100.0 32 ............................ TGATGCTGATACCGTTGGCGCATTACCTGCAA 9959 28 100.0 32 ............................ CTACTCATTTCACGTTGATATGAGGTTGAGTC 9899 28 100.0 32 ............................ TAGGCGATATCTCAACTGATTTTAGGCCAAAA 9839 28 100.0 32 ............................ CGATCAAGTTAGAAGAAGAAGAAATTGAAAAA 9779 28 100.0 32 ............................ TATGAAGTAATTAATGACCTTTGTTCAGTATT 9719 28 100.0 32 ............................ TAACTTGAAATGGTGTAAGCAAAATGAAATAT 9659 28 100.0 32 ............................ ATGTGAAAAGGATGGGGGATGGCATTTAGTTG 9599 28 100.0 32 ............................ GCTAGTTAGAAATTCACTGGATACTTTTGTAC 9539 28 100.0 32 ............................ ATTATCGATTACTGTATCAATTTGGGTTTCTG 9479 28 78.6 0 .................C...AA.ATC. | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.2 32 GTTCACTGCCGTATAGGTAGTTTAGAAA # Left flank : AATAAGAGTTTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACATTCGCAACGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAATAACCACTAAACAACAAACGTCCGAAACTCAAACAATCCAAAAAATAAAGAACTAAAAAATTTTGAGGAAAGGGGTTTTTGAAAATTAAATTCCTACTTATTGCTAACCCTTTTTTTTGACTTAAAATAAAATTTTTAAAAATCAATATGTTGAAAAACCGCTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TTTATTAAATCTCTTAGATAATTATTTAAAAGACTCGTTTTATACATAAAACAATGTTAATTTATTGCTATCTAGAATTTGAGTTTATTTACTTATTATCATGGATTTGATTCATTCGTCTGATCTTAAAACGATTCTACATTCCAAGCGTGCTAATATCTATTATTTGGAGCATTGTCGAGTTTTAGTCAATGGTGGTCGAGTTGAATATGTGACTGATCAAGGGCAGCAGTCATTATATTGGAATATTCCAATAGCCAATACTAGCTGTATTTTACTTGGTACAGGCACTTCATTAACTCAAGCTGCTGTGCGTGAGCTTTCTCGTGCAGGAGTCATGATTGGTTTTTGTGGCGGTGGTGGAACGCCTCTATTTTCCTCGACAGAATCGGAATTTGCCTGCCAATTTTTTTCACCGCAAAGTGAATATCGTGCAACCGAATATCTGCAAAGTTGGTGTCAATTCTGGTTTGACGATAATCTCCGCCTACAAGCTGCTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 76685-76177 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSF010000002.1 Gilliamella sp. M0364 NODE_2_length_355983_cov_268.782913, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 76684 28 100.0 32 ............................ ATCACACGCTATGGTTGAGTATGCAGCTAACC 76624 28 100.0 32 ............................ TTCAAACTGATAGCGGAATCATCATACCCGAA 76564 28 100.0 32 ............................ ATGGGGGTATGTTGCGGCGAGTTTTGGAAAAT 76504 28 100.0 31 ............................ GATTGGCGGGACTATGCAGATTTTGGGAAGT 76445 28 100.0 32 ............................ ATATGCACTTCTCGTGTCAAGATTAAGTGCAG C [76444] 76384 28 100.0 32 ............................ TTTTGTAGCAGGATCAATACTAGCAAGTAATT 76324 28 100.0 32 ............................ TACGGCTGCAACAGAAGATGATTGGAATATGC 76264 28 100.0 32 ............................ ATATTTACCAACAGCAGTTGGCATACCAAATT 76204 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : CATAAGAGTTTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACATCCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGTAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTATTCACAGTACAGAAACAACCGCAAAACAACAAAACGTCCGAAACTCAAAGAACTAAAAAATAAAGAACTAAAAAATTTTGAGGAACGGGGGTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTTTCTTTTTGCCAACTGCATTTATAGTATATGGGATTCTA # Right flank : TGATACAATCTCTTTATTATTTATATCGTATGTTATACCCCAAAATTGAAAAATACATTTTCAAGAATTAAAACTATGTTTTAATAACCTAACTTAATAATAATATTTACAAAATTTAACAAATAAACAATTAAATACTATTGCTTAGATTTTTTTTATGACTATACTTCAAGTGTTTATAATAAACAATATTCGACGGATATTTAGCCGATAAAAATAAAATAAAACCAAAAAAATCATAGAATTACTTGACAGGAACGTCAAAATGCATTATAATTTAAAACACAAAACACAAAACACAAAACCTGCCCAACCTATAATTTAACGTTAGTAAAGTTAAGCACGTACGGTCTATTATCTCACTACAATTTATTTTTCCAACAAATTTGGCAAGGGTTTTCAACATTTCTTAGTTTAGTCTTTTTATCTCGGCCGATGGTTTTGGTATTAACCATGGTTGTTTTACAGTCTATCTCTTTTTCTAATTATGCATTAACCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 288905-288083 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSF010000002.1 Gilliamella sp. M0364 NODE_2_length_355983_cov_268.782913, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 288904 29 100.0 32 ............................. CCCAGCATCATCAATTATTTTTGCTAATACAT 288843 29 100.0 32 ............................. AATGGTCGAATAACTGTGTGACCAATTTGTGA 288782 29 100.0 32 ............................. GTATCGAGACAGCTTTGTCATGTCAACAACGT 288721 29 100.0 32 ............................. ATAATGCAAACATTCTATAATTGATTCATGTG 288660 29 100.0 32 ............................. CATTTGTTCATGACTGCAACACCAAAAATGGC 288599 29 100.0 32 ............................. TTAAACCTGTTACTAACGTCCGATTTAAAGTC 288538 29 100.0 32 ............................. ATATAAAACGGGAGAGATATGCGAGGCCGAGA 288477 29 100.0 32 ............................. ATTGGCACAGGGTCTCCGTAATGGTCATAAAC 288416 29 100.0 32 ............................. CTTTAGCTATCTCTACGATATTTCTTGGTTTT 288355 29 100.0 32 ............................. TTATGAACATATACCTATTATTAGTGTTGATT 288294 29 100.0 32 ............................. TTAAATTTTTTACGAATAACCGAATCGATGTT 288233 29 100.0 32 ............................. GTGAAGTTCCGAGTGGTGAACCATCATTATTT 288172 29 96.6 32 ...........................T. CTCGGAGAAATATGTTATTGAGCACGTATATA 288111 29 89.7 0 ......T...................A.T | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.0 32 GAGTTCCCTGTAGGTACAGGGATATACCG # Left flank : CTTATCGAAGAAGTTTTATCTGCTGGTGGAATTGAACCGCCACCAGCTCCAGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTCTTGCTGACAGTGGCTTTAGGAGTCACTAAAAATGAGTATGTGTGTTGTAGTAACTGAAAATGTCCCTCCAAGGTTACGAGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGGGTTTACATCGGTGATATATCAAGACCAATAAGAGAAATGCTATGGCAACAAATCACTAAACTTGCTGAGGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACTGAGTCAGGATTTGACTTTCAAACTTATGGTGCAAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGGTTGGTCTCTTTTTTACCTATTGAAAATCAATAAGTTAATGTTCTTTAAAAATTAGGAAAATTTGGTAGATTTTAACTAACTAAAAAATATTATATAAAACAATTATCTATATTTAGA # Right flank : TTATTAGCTAATAAAATTACATCCAAATGGTTTTAAATTATCTACCTTTATGTGAGTAGATGGTATACACTCCTCAATATTTTTTACAAGGCTCTAATGATAGCTATTTATAAAAATAAAATTTAATAATCATATGCAGAGATAATATGAAATAGAGGTTTTTTAGTTAAACTAAAATAATTATTAAAAATAGCGTACAATACTCAACATTAATCGTAAATTCATTATCAATCATTTAGGAATTTTGTATGACAGGTAAATTTATTGTCATCGAAGGTTTAGAAGGTGCTGGCAAAACAACAGCCATCAATACTGTTGCACGTATTTTAAAACAACATCATATTTGTGATTTACAATTTACTCGCGAACCTGGCGGTACTCCAATTGCAGAAGCATTACGAAATATTATTAAAAATGGTTTAGATAATGAGCCGCTAACTGATAAAGCGGAATTGCTAATGCTTTATGCTGCTCGTATTCAATTGGTTGATAATGTAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTAGGTACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [76.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 308093-308366 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSF010000001.1 Gilliamella sp. M0364 NODE_1_length_826876_cov_248.484122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 308093 29 100.0 32 ............................. AACTGGCAACCAAAAAAGATACGCTATTTAAA 308154 29 100.0 32 ............................. AAAAGCTAAAGGCTTGGAAAAAATATAGGATT 308215 29 100.0 33 ............................. TTCTTTCTGACTTTGGTCAGGGTTCCACATTTC 308277 29 100.0 32 ............................. TCATCAAAAAATGTCGACGTTTTAAAAGAATT 308338 29 86.2 0 .....................C..TTG.. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 97.2 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : TTTAATGATGATGGTGAACCAACCAGCACCGCCGGCCGCCCTATTCTATCGGCCATTGAAGGTCAAGATTGTGATCAGGTGGTAGTGGTGGTCACCCGCTACTTTGGTGGCATCAAATTAGGCACAGGCGGACTCATTCGGGCTTACGGTGGTTCGGCTAGTCACTGCTTACAACAAGCAGAATTAATCGAACTTATTGCTAGAACATCATTACAATTTCATTGCTATTACAATGAATGGCCAATTATTGAAAACCGCTTAAAAGAACTAGATGCAGTCATTGAACAACAAAATTTTGATGCTGAAGGTGTAACTGTCATTATTGCTATAACACAAGATAATGTAGTCATACTTAAAAAAAATATTAGCGATATTACTCGCGGTAGAGTGATTATCAAGACTTAAAACACCTGTGTAAATATCCATCCAAATACAGCAAAAAAATTGGTAGAAATTGTAGACTGCGTATTTTAATTATAAAACAAACGGTTATAATTAGA # Right flank : GTTCCCTGTGTGTACAGGAATTAACTTCAAATTCAAACAAACCACCTTCTGGCGGTTTTTTATTGCCCAGAATTCCTAAATAACTTACTATTGCCTAAAAAGGAGATGGCATGAAAAGAATTACTTTATTTGGGATAGCTTGTTTTGCTTTGTATGGTTGCGGTAACGATAGTGATGGGCAAAAGGTCACTGAGGAGATGTTACTTGGTGAGTGGAACTGCAAAGTTAGCTCGCAAGAAGCAGAATCAAGGAATGGTAAGTTACAAGATTTTGGTGATCCAGAGTTCGAGGAAAATAAATACATTTTTACCAAAAAAGATGGAAAGCTTTTTGTAAGTTTATCTTTATATAAAGAAGATTTAATGCCTTTTAATCTAGAGGATATTTACAAAAGACCTGAGTATACGGAATATGATAGACAAAGAACTCAAAAGATTAAATACCTATCAAAAGATAGTTTTAGTCTAAACGGTACATATACAATCATCGATAAAAACAAC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 375588-375260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSF010000001.1 Gilliamella sp. M0364 NODE_1_length_826876_cov_248.484122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 375587 28 100.0 32 ............................ ATCAGCTGATTATCTCACTGTTGCTAACATTA 375527 28 100.0 32 ............................ TATACGGCAGTGCAGTTAAGTATAGAGTAATT 375467 28 100.0 32 ............................ TACAGCTTTAGCTTGAGCATTACAAGAAACGT 375407 28 100.0 32 ............................ TAATAGCAATAAAATTACCGGTATTAACATAA 375347 28 100.0 32 ............................ GTATAGGTAGATTTAAATTTTAAGTCATTACA 375287 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTTACTGCCGTGTAGGTAGCCAAAAAT # Left flank : CGCCAATAAATCGCTAAGGTTAGTTATAACATCAGCTATTACTAATAATAAACGTTTATTTTTAGAAATTAGTTTAGTGCTTCCTATTTAGCGACATTCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGTGCGTTAAGAGCTAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGCATAGAAATAACCGCAAAACAACAAACGTCCGAAACTCAAACAACCAAAAAATTTTGAGGAGAGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTGACTTAAAATAAAATATTTAAAAATCAATATATTAAAAAATAGCTCAAAAAAAAGGGTTTTTATTGGCAAAAATAGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TCAAACAAACCACCTTCGGGTGGTTTTTTATTGCACAAATCTTTTAAATAACATACCATTGCAAGAAAATATCAAGATTAAGGAGATGATATGAAGAAGATTGTGTTGTGTTTGTTATTTGTCCCTTTTTTTGTTTTTTGCGATTCAGTAAAAATCGGTGATTGGGTGGTTGATAATCAAGAAGATCCTATTACTGATCAAAAATCAGTTAGAATATTCATATTTGATAGCACAAAATCTAAGAGCGATAGTGCTGCGTTTTTATTTAATTGCAACTCAGTTAATCTCACATCGTTTGTTATAAATGATTTGCCAAAAGAAAGTGAGAGAGGCGATTCAACAAAAATCATATTAAGAGTGGACAAAAATACTCCAATTGAAATGAATTGGACTAAGGGAGAGCTAGGATATGAATATTCTGATATTAATGAAGTTAGCGATTTGATAAAAAATGGGAAAAAGTTAATCATTAGAGCCAATTATGGAAAAACTAAGGATTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTGTAGGTAGCCAAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //