Array 1 64273-63510 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSHE010000015.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
64272 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA
64211 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA
64150 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC
64089 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC
64028 29 100.0 32 ............................. AATGACTTTATCGACCGCCCGATCGATGTTCA
63967 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC
63905 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC
63844 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA
63783 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC
63721 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG
63660 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT
63599 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT
63538 29 100.0 0 ............................. |
========== ====== ====== ====== ============================= ================================= ==================
13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT
# Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.51 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 90488-89971 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSHE010000015.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
90487 29 100.0 32 ............................. TCCACGCTGTAACGGCCATCATTAAGTTTAGT
90426 29 100.0 32 ............................. GCTGATGGTCTGGGAGTGTCCATCGGGCAACT
90365 29 100.0 32 ............................. GAAGTAGGCCTGACAGTGATTGAACGCATACT
90304 29 100.0 32 ............................. AGTTGGGGCGGCGCAATAACGAGACGATACGC
90243 29 100.0 32 ............................. GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT
90182 29 100.0 32 ............................. TCAACGCGCTCAGACGTTGCGTGAGTGAACCA
90121 29 100.0 32 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGGC
90060 29 100.0 32 ............................. CCCGGAATGCATTCTGAAGGTTTGCTGTATAT
89999 29 96.6 0 ............................A |
========== ====== ====== ====== ============================= ================================ ==================
9 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA
# Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTTTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCACTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAGAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA
# Questionable array : NO Score: 6.24
# Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.65 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//