Array 1 263-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJGX01000097.1 Escherichia coli strain F6P F6P_BDMS190049501-1a_1.clean_(paired)_contig_97, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 262 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTGA 201 29 96.6 31 ..........................T.. GAAGAGCATGAGACCACATACCAATTCACCG G [176] 140 29 96.6 32 .........T................... GAAGATATTTCGGGCGTTGGCATGCGCGTGAC 79 29 96.6 0 ..........A.................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : ATTCTGACACGAT # Right flank : GGCGCTCATTGAGATTCCCTCTTGTGGGCTTTTGTGTTCCCCGCGTCAGCG # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.60,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 62550-63493 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJGX01000006.1 Escherichia coli strain F6P F6P_BDMS190049501-1a_1.clean_(paired)_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62550 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 62611 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 62672 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 62733 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 62794 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 62855 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 62916 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 62977 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 63038 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 63099 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 63160 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 63221 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 63282 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 63343 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 63404 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 63465 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 89193-91051 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJGX01000006.1 Escherichia coli strain F6P F6P_BDMS190049501-1a_1.clean_(paired)_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 89193 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 89254 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 89315 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 89376 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 89437 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 89498 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 89559 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 89620 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 89681 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 89742 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 89803 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 89864 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 89925 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 89986 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 90047 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 90108 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 90169 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 90230 29 100.0 32 ............................. CAGACCCAGCGTGCCGCTCAGCGCCCGCGAGC 90291 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 90352 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 90413 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 90474 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 90535 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 90596 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 90657 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 90718 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 90779 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 90840 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 90901 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 90962 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 91023 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //