Array 1 1827868-1825365 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKJO01000001.1 Haloferax litoreum strain MBLA0076 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1827867 30 100.0 38 .............................. GTGAACGTCGGCGAGATGCCAGCCGAATGCATTGCCGC 1827799 30 100.0 37 .............................. ACTTTGACCCCGAGGACGAAGAGAAGGGACTCACCGA 1827732 30 100.0 33 .............................. TTGGGCGCGAACGTCGTCCTCGAAGACATCACG 1827669 30 100.0 35 .............................. TCGTGAATCGAGGACCGGCGGAGGGTATGGACATA 1827604 30 100.0 35 .............................. ACTTGGTGCAAGCGGCCTGTCGGCCTCCTCAACGA 1827539 30 100.0 35 .............................. GTGCGGACGTCGCGACTGGTGAGGCCAAGTTCCGC 1827474 30 100.0 36 .............................. CGCCCAACGCAACCAGTATTTTCCAGAGTTGTCGTT 1827408 30 100.0 35 .............................. AGGTCCATCAGAACCTGATCGGCACGACGCTCGTC 1827343 30 100.0 35 .............................. CTCCGTCTGTTTTTCGTTGAGCAATCCGAGTTCAC 1827278 30 100.0 33 .............................. TCGAAGAGCACGTCGGTCGCACCCCTCGCGAGG 1827215 30 100.0 36 .............................. CAGCGATGCGATTGTCGTGGGTTTCGCCGATGCCGG 1827149 30 100.0 35 .............................. CGGTGAGGAGTTCGGCGGCACGCGACTCGTCCATC 1827084 30 100.0 35 .............................. TATCCCAGCACCGTCGAGCCTTCTTGCAGTGGGTC 1827019 30 100.0 35 .............................. TTCCCGGTCGCTTCGGTCGCCCCGTCGCTCTCGGT 1826954 30 100.0 35 .............................. ATCGCTGACCGCCTCGACCTCGCCAAGCTGCGGAA 1826889 30 100.0 37 .............................. ATGGCGATGCGACGGGACCAACTACCGGCGCACACGC 1826822 30 100.0 34 .............................. GCGTGGTACGAGGGCGTCGTCGAGGGTATCCAGC 1826758 30 100.0 34 .............................. ACGTCGTTGCAAAGGCACTCGCCGGTCGACTCTT 1826694 30 100.0 34 .............................. ACTTTGTGCTCGTACATCCTCTTCGAGTCCGGTT 1826630 30 100.0 35 .............................. ACTGGGTGGTCAAATTCGCAATTGCCTTTGCACGG 1826565 30 100.0 36 .............................. GCCCCAGCGATGGGCGCGGCCAGACCGGCATCCATC 1826499 30 100.0 37 .............................. TGCTCGCGATACCAATCGGTACACACGTTACAAAGTC 1826432 30 100.0 34 .............................. AACCGGCAGATTTAGTTCACTGATTCTAGTAGTC 1826368 30 100.0 36 .............................. CGTCGTCTGGGTCGACGACTGGATACGCTCTAACGT 1826302 30 100.0 37 .............................. TCCTCGACTAAGCCAATTGTGAACTGTCTGTGGTGTA 1826235 30 100.0 36 .............................. CCGTAGGTCCCGCGGTCGCCGGTCGGGTCGCCCGTG 1826169 30 100.0 37 .............................. CGGTGACGTCGACGATTTGGATACCTCCGTCACCAGA 1826102 30 100.0 33 .............................. CCGCGAGGTCGATGAGTAAGACGTCGTGACCTT 1826039 30 100.0 37 .............................. ACCTATGACGAAACTGCGGATGCGTGGATACCTGCAA 1825972 30 100.0 34 .............................. GTCCGCGGATAGCAACATCTTCACCATCTTCCGA 1825908 30 100.0 32 .............................. GCGTGGGGTGCGGACCACTGCAAGGGACAGGA 1825846 30 100.0 36 .............................. CGGCCTTGACTGGAGGGCCAAACACTCAGCAAACGT 1825780 30 100.0 36 .............................. GGGGTGATTTAGATGGAACTCGGCGGCAAGCAGACC 1825714 30 100.0 33 .............................. GAACGAATCTATCAACTCGAAGCCGGATGACTG 1825651 30 100.0 33 .............................. AGCGAGGTTGTAGCATAGAATGATCAGAAACTC 1825588 30 100.0 34 .............................. GAGTCGTCCGGGTTGTTCTCGGCCCACGTTGCGT 1825524 30 100.0 34 .............................. CGAGTTCTCTTCGAGTTCCGGGAGGAGTTTGATA 1825460 30 100.0 36 .............................. GTTTTACAGTCGTTCCGGGCCGGAGATACCGCCAGC 1825394 30 93.3 0 ......................A.....T. | ========== ====== ====== ====== ============================== ====================================== ================== 39 30 99.8 35 GTTACAGACGAACCCTTGTGGGGTTGAAGC # Left flank : TGGAAGAGACAGTTGAACACCCGAACCTGAAACGTAAAGTGAGCTACCAATACCTCCTCAGGCTAGAAGCATACAAACTCAAGAAGCACCTCGTCGCAGGCGAACCGTACGAGCCGTTCAAGAAGTGGTGGTGATGTACGTCGTTCTCGTGTACGACATGGAAGCAGATCGTACTCAGAAGATGCTCCGTCTTTCGCGGCGATACCTCACTCATGTTCAAAACTCAGTCCTTGAGGGAGAGATATCGGCCGGCGATCTCGAAGAACTCCGCGGACATATCGAAGCCTTGCTAAAAGACGGGGAATCAGTCGTCTTGTACGAATTGTCTTCAGACTCATTACTCAACCGGACGGTCTACGGCGAAGATCCGACTGAGGATTCCAGGTTCATCTGAGAGGTTTTCCATCGACCCCCGGGGGGTTGTGGGGGGATTGGAGGTCGACGGAAACACTATGTGCTGGGCAGCCATTCTGAGGTTTGAGGGCCCAGAATTGGGCATG # Right flank : ACTATCGACGAAGCCGAGCACAGTTACACGACCACGTTTCAGACAAACCCTGCCAAGTGCCACAGTTGCGAGTATCTTGATGTCTGTACGGCGTCACCACTGAACGAGTAACTATCCATGACCTCTTATCTCGGCGTCGACTGGGCCGGTGGCTGCTGGGTCGTCGTCGAAGCCGGTGACGAACCGAACGTGACCACCGAACCGTCGATCTACAACGTCTGGCACGAACACGGGAAGGGAGACGACGTCCAATCGATTCTCGTCGACATCCCTATCGGCCTTCCAGAGAACGACACGAGAGACTGTGACACCGAAGCCAAGGAGAGACTCGGCAGTCGTTCGAGTACGGTCTTCACGATTCCACCACGGGATGTCGTCGAGGCCGACGACTACGAGACGGCCAAAGAGAACAACGGCGGTTCACTTGGGAGTCAAAGTTGGTGGCTATTCCCCCGAATCCTCGAAGCCGACGTCTTCCTCCAGGAGAACGCCGACGCACG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1840933-1837285 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKJO01000001.1 Haloferax litoreum strain MBLA0076 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1840932 30 100.0 35 .............................. TCGTCCGTCGTCGTCTCTTCCTGCCGGTAGCGGAT 1840867 30 100.0 34 .............................. GAGTGGTGCGTGCATCCGGAGCCCGCCGCCGAAC 1840803 30 100.0 37 .............................. AGTCCATGCACCCGAGCCGTGTTCGGTCTGGTGGCGG 1840736 30 100.0 35 .............................. GACCTGCTCGGGCGGGTGCCAGACGTTCCCCTCGT 1840671 30 100.0 36 .............................. ATCCGATCCATTCATCCTATCCGGGACGATGTGGTG 1840605 30 100.0 36 .............................. AATCGTGGAACACCGCCAACAGACTGTCGAGGAAAA 1840539 30 100.0 36 .............................. CTCTGGTTCGAGTGGGTCGACGGCGGTGGACTCGGC 1840473 30 100.0 35 .............................. TCGGATGGGCCGAGTATGAACGTTGTCCGACGGCG 1840408 30 100.0 35 .............................. GGCTACTACGTGGACCACCCCGAGCACGCCCTGGA 1840343 30 100.0 35 .............................. CAGTGAAACATGATAGGCCAAAGAAAGAACGATTA 1840278 30 100.0 35 .............................. GCGGCATGCGCCAGTCGACGGGTCGGATTTACTCA 1840213 30 100.0 36 .............................. TGTTAGCACATTCCAGATGATATCTAATTGAGCCTG 1840147 30 100.0 35 .............................. TCTGCAAGCGTTGCTCCCGCCACCCATTCAAAGTC 1840082 30 100.0 37 .............................. GACCCAATCCATCGAGTGTGACGTATATCGACAAAGT 1840015 30 100.0 35 .............................. TGGTTCGCGAATTCGGTCAGGTACTCGCCGAGAGC 1839950 30 100.0 36 .............................. ATTAGTTGCGGCAAGAAGTTCCGTGTTTTCAGAACG 1839884 30 100.0 35 .............................. ACCTGGCCGATTACCGCCGCGACAGTCGCGGCTAT 1839819 30 100.0 35 .............................. ACGCATCGAGTCAACGTCAAAGGAGACAACAACGG 1839754 30 100.0 36 .............................. AACGGTTGACCCGTCGTTCTGGATTGCACGTCCGAA 1839688 30 100.0 37 .............................. GGATGGGGGGCGACTGAGATGATGACTCGGTTCAATG 1839621 30 100.0 37 .............................. GACTTTGTAACGTGTGTATAGATTGGTATCGCGAGCA 1839554 30 100.0 36 .............................. TCCCAGTGCGTCCTCTAAGCACTTGATGATGAAATC 1839488 30 100.0 33 .............................. ACATTGCACACATGGCACGGGATTACACAGACT 1839425 30 100.0 38 .............................. TCTGCAATTGTGATTGTAGTTTCGTCACGTCGCCAGTT 1839357 30 100.0 37 .............................. GTCTGGCGACCGTGTCGCATCGCACGGTGGAACTGGC 1839290 30 100.0 37 .............................. CTGATGATGCTACGCTTCCAAAGAAACAACTCCCAGA 1839223 30 100.0 36 .............................. CGGCGCTGGAATGTCCGGGCAAGACGGGATTGGCTG 1839157 30 100.0 34 .............................. GAGGCATTGAGAACTTCGGCCTCTTCCTCGAAGA 1839093 30 100.0 35 .............................. GGATACCGTCACCACGGTCGGAGTCGGAGACGAGC 1839028 30 100.0 36 .............................. AGAAACAGGTCCGTGGGCCAACTGGTCCGCGGGGCG 1838962 30 100.0 36 .............................. AACCCCCGTGGGTAGACGAACCGATAACATTCAGTA 1838896 30 100.0 37 .............................. GTCAACTCCTACCAGCGACTCCTCGGCGACCACGAGT 1838829 30 100.0 35 .............................. ACTCGTCGTGTTCACGTTGCGGATGCTGGGTGCAT 1838764 30 100.0 33 .............................. ACTACACGAGCGCCGAGTCATGGTCGGCGGGTG 1838701 30 96.7 37 .............T................ TCTCAAGCGTGCCGGGAACAGCGAACGAGAAGTTCTC 1838634 30 100.0 37 .............................. AAACTTGCTGACGGGGTCTCACCCGTCACTGTGAATA 1838567 30 100.0 36 .............................. TCGTTAAACGATACCTCAATGACTGCGTTCGTGCCG 1838501 30 100.0 37 .............................. CCGTTCGATGCCACTCTCTTGCTACGGCCGCAACCGC 1838434 30 100.0 35 .............................. TTGGTGCCGCCAATCCGACGAATGAGAGATTCATT 1838369 30 93.3 36 ................C...G......... GACTACAAGAGTGTGATACCTGGGTCGCTGCTGCAG 1838303 30 90.0 35 T...............C...G......... GGCACGTGGCAGACGCACATCCATCTGTTCGACGG 1838238 30 86.7 36 A..........C..G.....G......... GACGTTGATGATCTTAGGGGTGCATCGGCCACCGAT 1838172 30 86.7 36 ...CT............A..G......... AGTCAGATGATGAGCAAGCAAGGGGGCGCGGCATGA 1838106 30 90.0 36 ...A................GC........ GTGTCCTGCGACGAGGCGCACAACATCGTGAAGCAG 1838040 30 100.0 35 .............................. AGGTACGCTACTACGTCGGCGGCGAGTGTGCCGCA 1837975 30 86.7 36 ...A.......C..T.....G......... ATCAAGAGTGCTGTCCTCATCGTGGCGGGTTCGCTT 1837909 30 90.0 37 .................C..G......G.. TACCGAGGTCCACAGCTTGACATCACCGTCCGCCCGT C [1837894] 1837841 30 93.3 35 ................C...G......... TAATCTGTTATTGCGCCCGCGTTGGCCGTGTTGTT 1837776 30 86.7 37 ...A.........G.....CG......... TTCTGTGTTAAGTTCTAGTCCGAACATTCTAGGTGGT 1837709 30 86.7 36 ...A.......C.T......G......... CGCGACCGGCAGATGCTTCGAATCAAAACACCGCCA 1837643 30 93.3 35 ...A................G......... GCACGCATGCCGATTTGCCGCTTGAGGCGTTCACT 1837578 30 93.3 35 ................C...G......... GACCAGTCGACGTTCCGGCACCGTCAGCTCGCGCC 1837513 30 96.7 36 ....................G......... GTGTGCTCGTCCTGCGGCCACTCGGTAGAGTTCGGC 1837447 30 93.3 36 .............G......G......... ACCCGCCAATTAGCATCGAGGTCTCCGAGAGCCGTT 1837381 30 96.7 37 ...C.......................... TACGAGTGGGAACGCGCGGTGAAACGAGTTGTCGACA 1837314 30 83.3 0 ....................G.AC....TG | ========== ====== ====== ====== ============================== ====================================== ================== 56 30 97.2 36 GTTTCAGACGAACCCTTGTGCGGTTGAAGC # Left flank : CTATGGGAAGGGGGCCATAGAATATATTCCCAGCAACTGAGCTGAATGGACGATTTCGTCTGACGACCGAATCTTGGAGTTGATTCGGGAGCACGGGAATCTCACCCCACAGGCTATCAACGAGCTCGGTAGCCCGGTTCCAGATCACGCAAGTCGTTGTTCCAAGTTGGTCAAGTTCGGTCTCTTGACCCGAATCAGTCGTGGTCTCTACGGCATCACCGATGACGGCCTCTGCTACTTGGACGAGGAACTCGATGCCTCGACGCTGGAACCCGTCGACGACGAGTAGTTGGTTTTGGATTGCGCTGGCTGTTGACACGGCAGTCTAGACGACTGTGTTGGTGTGGAAAAGCGATGACTGGGGTGTGTCCGATTGGCCGGACGTTGTTGACCGAGCGGTTTCCATCGACCCCCCGGGGGTTTGTGGGGGATTGCGGGTCGACGGAAACACTATGTGCTGGGCAGCCAATCTGCGGGCTGTGTGCCCAGAATTGGGCATG # Right flank : ATCCACCCTCCTTACTCTGTGAGAGACGAACCTCTGCATCGAGACCGCGACACGTGTCGGAGAAACAGATATTATCCTTCGATAATAACATCTCGAAAACAAGACAGTGAGACTACTAACTCGGCTGCGCGCTCGCCGCGACGCTGCCTACGACAATAAGTATCACCACAAGCTCCGAGGGCGCCTCTGGCGAGCCTTACAGGATACAAAGTACGACCAATACCACGACGCAAACCGTCCGGTTGGGTTCAGCTACAGCAATCCATTCCCGCCGTACGACATGGAGGAAGGAGACGAGCGGACGCTTCTCGTCGCCGCCCCGCAAGAGGACCTCCTCGCAGAGGTGGCTGAAGACTTCATCACGAATCGTGAACTGAACATCGGGGAGATGCCGTTCCATATCGACGAGATGACCAGTATCTCACCAGACGTCGGTGAGCCCGGAACATCGGGCACGATTGAGTCCGGAACGGGGCTCCTCGTACGAATCCCGCCGTGGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [47-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //