Array 1 8277-14409 **** Predicted by CRISPRDetect 2.4 ***
>NZ_QNIF01000218.1 Xanthomonas oryzae pv. oryzae strain DBX0013 scaffold218, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== =============================== ===================================== ==================
8277 31 100.0 34 ............................... ACAATCTCATGGCCGGTGGCGAAGGTCTGAACGC
8342 31 100.0 35 ............................... ACGAACGACGAACGCAAAATGCTGATGGCCGCAGG
8408 31 100.0 34 ............................... TAGTACAGTAGGTCGTGAAGGCGACCTCTACCGT
8473 31 100.0 34 ............................... CCGACCTAACATCGTCGCGAACGTCGTACTACTG
8538 31 100.0 33 ............................... ATCAATGCGTTTGGCTCTCAGCGGGGAAGCGTA
8602 31 100.0 33 ............................... CGCTGTTACCACTCTTGATAAGGAGGTTGTCCA
8666 31 100.0 34 ............................... TGGAATTATGTAAAGACAGGGACATACATACCTG
8731 31 100.0 34 ............................... CAAGAACACAAGGCACGCAAGACACTGAAAATCT
8796 31 100.0 34 ............................... TCCTGCTGTTTGTTAATATTCTCCACCTCTCTGG
8861 31 100.0 33 ............................... CAGCCTTCGGTAGTCGTGTCGAAGTACCAAGTT
8925 31 100.0 35 ............................... AAGATCCTCTGTTACATCCCTGCCAACATTAGACA
8991 31 100.0 35 ............................... AGCGCAACATGGTGACGGTCCTGGCGGAAGAGCGT
9057 31 100.0 35 ............................... CCGAGCTATTGCCAGCTTATTGTCGAAGGGTACAG
9123 31 100.0 36 ............................... AGCCAAACGATTGGTGTAAGCCAGTCTGGTAACGAG
9190 31 100.0 34 ............................... CCTCGTTGGTGCATTCGATCTGGCTGCCCAGATC
9255 31 100.0 36 ............................... CTGCCCGAACACTTCGAAGAACCCCCGGTAGAGGTA
9322 31 100.0 34 ............................... CAATGTTGCAGGCCAGCCTGGCCGAGTATCCGGC
9387 31 100.0 34 ............................... TGTGAATTTGCAGCTATGTTGCCCTCAGCCTCTG
9452 31 100.0 35 ............................... GCAGCACCGTAGACAACAAGCAGGCATTTCAGTTG
9518 31 100.0 34 ............................... TTCGTTGCCGTGCTGCTAAAGGTTAGCTGCACAC
9583 31 100.0 34 ............................... CAGCGGGATGAGGCGGAGGCGCGGGCACGTGTGG
9648 31 100.0 34 ............................... TGACACCCTTGACCCAGATCTATTCCATGAGCTC
9713 31 100.0 34 ............................... TGTGCATTTGCAGTTATGGTCCCTTCCGCCTGTG
9778 31 100.0 34 ............................... AGCTGATTACGCCCCCAGCTACCAGACATGCTAA
9843 31 100.0 34 ............................... CTTAATCCCGGGGATGTCTACGCCGCCTCGCCCT
9908 31 100.0 35 ............................... CAGCAATCACTGCTGCTAATCCGTCTGTTGCGACT
9974 31 100.0 34 ............................... TGCCAGGAGAAGGGAAGCTCAAAACTCCGAACCC
10039 31 100.0 34 ............................... TTACTCCTCAGGGTTATGTTAGGTTATACCACAT
10104 31 100.0 35 ............................... ATTGACATACCTGCATTTCAGGCTTTTATTTTGCA
10170 31 100.0 35 ............................... TTGTGTGGCTGTATCTGCACTGTGTGTCGTAATAT
10236 31 100.0 34 ............................... GACAATGGCGTGTCAGCTGCTCTCGGTGTAGGGT
10301 31 100.0 34 ............................... GCGGCCTCCAGCCTCTCAGCAAGCGACTTCGAAC
10366 31 100.0 33 ............................... CAGGCGTCTGCAACACAGCAGCTCCAAACGCTG
10430 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT
10495 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC
10560 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG
10624 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC
10690 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG
10755 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC
10822 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG
10887 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC
10955 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC
11021 31 100.0 35 ............................... AGGCTGTCGGTGACATTGGCCAGGGTGGCTTCCAG
11087 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG
11151 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC
11216 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA
11283 31 100.0 35 ............................... TCGCTCACGGACACGGAGTCATTAAACGTCATAAA
11349 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG
11415 31 100.0 37 ............................... TGTCAATGTGATGCTGTAACAGGTCCGCCCTTAGCCG
11483 31 100.0 35 ............................... AACACAGTTAGGCACATATGCCAGTATCTTGACCA
11549 31 100.0 34 ............................... ATGACGGCCAACAAGGTGCGTCGCCCGGACGGCG
11614 31 100.0 34 ............................... CGGTCACGACCACGAGCCCTGGGCGTTTTTCGCA
11679 31 100.0 35 ............................... GATGCGCGCCTCTGGAACGAGGTCCTACCCCGCTG
11745 31 100.0 35 ............................... TCTCACGGCCACTGCCGACTCGTATGTCATGGTCC
11811 31 100.0 34 ............................... CATTGGTGCCTGCCTGTGCCAGTATGTATGCATG
11876 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCCCGGGCACGTGTGGA
11942 31 100.0 35 ............................... AAGCAATGGCGCTCGGCCAGCCTCTACAGATCCGC
12008 31 100.0 34 ............................... GTCGCCGGGTACCAAGCGGCAAACCTCACACCAC
12073 31 100.0 35 ............................... GCCACCCCCGACGGCCATCACACCGTCAAGGGAAA
12139 31 100.0 35 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAG
12205 31 100.0 36 ............................... TTGACAGATGATCAGTATGACAGCTTTGCCAAGAAG
12272 31 100.0 35 ............................... AACTGAAAATTAACTCTATCTAACCAAAAGGAACC
12338 31 100.0 34 ............................... GTGAAATACTCGCTCGCAATCGACTTGATGAGCG
12403 31 100.0 35 ............................... CGCTACGATCCGGCATACGGGACGTAGGGTTGCAC
12469 31 100.0 36 ............................... ATCACGCGGACGAACAAGCCCTCATCGCGCGATCCG
12536 31 100.0 36 ............................... TCCCTCTGTTTGTTAATGTTCTCAACCTCTCTGGAA
12603 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG
12669 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG
12734 31 100.0 36 ............................... TCCTTGCGGGCAGTAAATACATCTGGCCGTCTATCA
12801 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA
12866 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC
12933 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG
12999 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG
13066 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA
13132 31 100.0 36 ............................... TTGACGGTGACGGTGTACGCGCCACCGGTGTTATTG
13199 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA
13267 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG
13332 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG
13397 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC
13462 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG
13527 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC
13593 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT
13659 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG
13724 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC
13789 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA
13855 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA
13921 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG
13985 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC
14052 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA
14117 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC
14182 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC
14249 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA
14314 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC
14379 31 100.0 0 ............................... |
========== ====== ====== ====== =============================== ===================================== ==================
94 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
# Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC
# Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCA
# Questionable array : NO Score: 9.26
# Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5
# A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [9.37,0.64 Confidence: HIGH]
# Array family : I-C [Matched known repeat from this family],
//