Array 1 238414-239846 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNZL01000002.1 Escherichia coli strain STEC 200 STEC-200_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 238414 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 238475 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 238536 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 238597 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 238658 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 238719 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 238781 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 238842 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 238903 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 238964 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 239025 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 239086 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 239147 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 239208 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 239269 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 239330 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 239391 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 239452 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 239513 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 239574 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 239635 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 239696 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 239757 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 239818 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //