Array 1 256959-253122 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBWY010000001.1 Microbispora sp. H10885 NODE_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================================================== ================== 256958 36 70.3 37 AAA.T.A....-..G.......GT..A..A....... CGCGTGGAGGACATCACTCGGGTTCAGTCTCAAATCG A [256941] 256884 37 81.1 39 ..A....C...T..T.......G...A..A....... AAGATCCAGGGACTACCGAAGCGTCGCTGGTCCGACCTG 256808 37 75.7 27 ...A...C.AT........C..G...A...G...G.. ACCTGCCAAAGGCGGAGGAGTTGGAGC Deletion [256745] 256744 35 81.1 66 ..............T....-......A..A-..TT.. TTGACAACTTAGATCGCGAAGGTGTTGCTGTCGGAACTATGGAGGCATACTGCCTGTTCAGGTGCC 256643 37 89.2 79 ....T....A................A.........T CTCCTCGACTCCTTCGGGTACGGCGCCCGCCTCTACTTGGCGGTCGTCCTGCGGTGCGGCCGCATCATGTCCCTGCGGG 256527 37 91.9 34 T................A...........A....... TTCGGCGGCCTAATCCCGGACTGAGTGAAGCAGG 256456 37 91.9 38 ......................G...A..A....... TGGGACCAGCTTCTCGCGCGGTGCAGCGTGCCGGGCGC 256381 35 89.2 34 ...........T..-....-.......A......... ACCCTCGGCTACACGGCTGGCGCGGGGCGGACCG 256312 35 81.1 38 ................A..-..G.-..T.C.T..... TCCCGCGGGGACATCCAGGTCCTAACCAACACCATGGT 256239 37 89.2 37 ..........T......A...A.......A....... ACCGCGGACGTCTACACGAGCATCGTGCCGGAGGTCG 256165 37 75.7 36 ....T.TC......T...A...G...A..A......T GTGAAACCAACGGCATGTGCATGTCTGAGTTCCTCA G [256130] 256091 37 83.8 38 .........AT...TT......G......A....... AGGTACAGGGCCACGTGTGGTTCGAGCGTTTCCACAAT 256016 37 89.2 36 .............CGT....T................ TCGATCCTTGAGGATGAGGCGAAGAAGGCCCTGCAG 255943 36 83.8 35 .........A...C.....TG.-......C....... TGGGATGCACTGGATCGGCATGGCCCTCACCTGGG 255872 37 97.3 37 ......................G.............. CTGTTCATCGTGGGCTTCAGCCTTCGCGGTTTCAACA 255798 37 97.3 36 .............................A....... CGCTGGGCGCTCCACGGAATCGTGTGGGGCATCGCG 255725 37 97.3 37 ........................T............ TTCAACCCGGAGACGTCGAAGCTCTACTGGTGCCCGA 255651 37 97.3 35 ........................T............ TTATGGGCCTGAGTTTCCAGCCCCGGAGCCTCGGG 255579 37 97.3 36 ......T.............................. TCCGTGGCCGACTTGCGGCTGATCCTGCGCGGCATC 255506 37 100.0 34 ..................................... CAGGCGCGCAGCACGTCGGGGTAGGAGGCGATCA 255435 37 94.6 36 ........T....A....................... AAGGCCACCTTCGGGACGAGCGACGCGAACTTCGTG 255362 37 94.6 37 ...A....................T............ TTGGACAGGGTCGGGGTCAGGGGCGCGAGGTTGTCCG 255288 37 94.6 38 .....A.........T..................... GGGTAGTGCCGCCCGTGCGTGCCGGAGCTGCTCCTGGC 255213 37 97.3 35 ...........T......................... ACGATGTCGGCGGAGAAGCCGGCCCCGATCACCTG 255141 37 100.0 37 ..................................... ATCGGCTTCTACCTGTACGCCCACCCGACCCGCGCCG G [255121] 255066 37 100.0 37 ..................................... ACGGCGAACCCGGCCGCGACGACCAGCGTGCTGTTCG 254992 37 97.3 33 .....................C............... AGCTCGCGAAGCGCCACCATCGCATCGTTCAGA 254922 37 100.0 37 ..................................... ATCTCCGACGGCAGCGCGGACGGGGCGGTCGAGTCGG 254848 37 100.0 35 ..................................... GGCTCGGACTGGGATTACACGGCCCTCCAGGTCAA 254776 37 94.6 36 ........T...........T................ GGGCACACGTAGTCGTACTGCTCGCCGTACTTGCCG 254703 37 94.6 38 ......................G.......C...... TTCACGGAGAGCGGGGAAGCGCGGACGTACGGCCTGGC 254628 37 97.3 35 ...................A................. CGCGGTGTGGAGGCTGTGGTCAACGCGGTCGGTCC 254556 37 97.3 37 ....................T................ ATCCTCGGACCCGGCGGACATCTCGCCTGGGTCGAAA 254482 37 97.3 39 ..............T...................... ATCGTCACGACGTCGGACACAAGCCGCTACATCGGGCAG 254406 37 97.3 37 .............................A....... CACGTCTCGCAATGGACACCCCGACTCGGCCTCCTGG 254332 37 91.9 37 .....................AG..........T... ACCTGCGACGGACGCCAGACCACCGTCCGCCTCCTCG 254258 37 94.6 39 .........A..........T................ TTGTTGGCGTTGGAGAAGAACGTGGTGTTGGGGCCGGAG 254182 37 91.9 35 ...............A........T...C........ TCATCCGGGTCGCGATTCTCCGCCTTACCAGCGAG 254110 37 94.6 35 ...................A....T............ ACCAACAGCGTGACCCCCAACTTCAGCACCGACAC 254038 37 91.9 37 ...............A........T...C........ GGAACCACGTAGGTGATGCCGAGCGCGCCGAGGATGG 253964 37 97.3 35 .........................C........... GGTTACCGCCGTAGGCGGTCTTACGGTCCGTACCG T [253940] 253891 37 94.6 36 ........................T..A......... GTCCACTCCCGGCGTGTCTTGATCACAACCTCGATG 253818 37 94.6 37 ....................T...T............ TACCAGTCGCCGGGTTTCGCGTTGATGAATGGGCAGC 253744 37 100.0 33 ..................................... ATTGAGCAGGCGACCGGCCGTCAGCTCACGGAG 253674 37 100.0 37 ..................................... GCGATCTCGGCGTCGGTGCTGCCTTGCTTGGCCGCCT 253600 37 97.3 38 .................A................... TCGTCCGCTCAGGTGCCGGACGCTGACGGCACCGTCCG 253525 37 100.0 34 ..................................... ATCGAACTCGCCGTCATTGTGTCCGCGCTCCGCG 253454 37 100.0 36 ..................................... ACCGGGCTGACGACGAACGTGCCCGTGGTGATCGAG 253381 37 97.3 36 ........................T............ CCGAAGATGCCCATCCTCACCACCCCCACTGGCCGA 253308 37 100.0 38 ..................................... ACTGACCCGTCCTCGACAGACCTGTGCGCGGGCGGCAC 253233 37 97.3 35 .........................C........... GCCACGGCGGGCACCGCGAGCGGGACAGCGCCAAC 253161 36 86.5 0 .................A....G...G.....-...G | G,TC,A [253123,253129,253132] ========== ====== ====== ====== ===================================== =============================================================================== ================== 52 37 93.2 38 GTGGCGGTCGCCCTCCGGGGCGACCGTGGGTCGCAAC # Left flank : TCTACATCTTCACCCACGCGGACGCCTTTGGCACCGCCCCCGCGCGCACCCTCACCGACATGGTCAAGGTCGAACGCGCCATCCCCGGTGACCAGCCCATCCGCGACTTCAACAACTACCTGATCACGATCGAGGAGACGCCTATTCCCGACGGCGTGACCTTCACTCGCGTTGTGGGTTAACCCGATTGAACGCCACGATCTAGAGTGAGCTACGGTCGAGAACGGCGCCGGCCTAGGCTGGCGAGGATCGCAACGCCGTCAAAAACACTGAACTGGGCGTCCAACCTGCCAGCGCTGGCCCGTCGGGGCCGGTGAGGGTTTTCGAAACTGCGTCTGGTAAGGATCCAATCCTTAAAACCCGTTACCCAGCACCGCCAAATGGTGGTGAGGATCGCAACCAATTTTGGAACGAAATTCCTGATGCCGACCCGGCAGCAGCGCCTCCCCTCGTGGGCGACGCTCATCTTCACCCGAATGGGTGAGTTGAAGCGATCTTAG # Right flank : GTGGGGTCACAGCTGGAAGCGCTGCCATCTCTCCCTTGTCCCAGCCTTTGCGATCTGCTTAATCTACTCTCCGCAACCGAATTGGAGCTGAGAGTAATGAAGAACTGCGTAGCAAAGCCGAAGAGAGGTCGAATAACTGCTCGTCACGCAGCAACGGCTGTCTGCGTATTGGCTCTCCTCAGTGCATGCGAAGCAGAGTCTCCTTCCTCGTCGCTTCAGTCTTCAGCGCCGACTGTCTCGACACCGTCTCCGGCGAGACCGACTCCACGAGTGGCACATGACTTGATCGTCGCGACCTACAGCGAGTACTGGAAAACACTCACCACAGCTGGCAGATCCTCGCCGGAGGAGGCCCGGAGTCTGCTCAAGCGCTACGTCAACGGCCCATACCTTGATCATCTTGTTGCCGGGATTCGGCAGATGGATGAGCAGGGGCGGGAGCCGTACGGGGAGGTGATCCCGCGTGTCAAGGAGGTGCGCGTCGGCGGGAAGCACGCTGA # Questionable array : NO Score: 5.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.09, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGACCGTGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.80,-19.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [23-76] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 263451-263997 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBWY010000001.1 Microbispora sp. H10885 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 263451 37 100.0 37 ..................................... GGCGTAACAGGCAGACCGGTTGCAGTGTCGATTACGC 263525 37 100.0 35 ..................................... CCTTGTGCTGCCAGGTCGTCATACACAATGGAGGC 263597 37 89.2 37 ......T.......T.G......T............. GGCGTAACAGGCAGACCGGTTGCAGTGTCGATTACGC 263671 37 100.0 37 ..................................... CCCGAGAACGATGCCCCCGGCCGCAAGGCCGCCGCCG 263745 36 97.3 35 ..............-...................... CCTTGTGCTGCCAGGTCGTCATACACAATGGAGGC 263816 37 89.2 38 ......T.......T.G......T............. TTCGCGGGGGCCTGCACCTGGCCGAGCAGCTGCTGCAG 263891 37 86.5 33 ....G.....T...C..G.....T............. GGGTCGGTCTGGGAGAACAGCTCCGGTCCTGGC 263961 37 89.2 0 ..............C.GG.....T............. | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 93.9 36 GTGGCGGTCGCCCTACAAGGCGACCGAGGATCGCAAC # Left flank : CGGCTCTGGCGGCATGGCACGCGTGTTCGAATGGCACCCGAACCAACCTCTGAATTGCGATGCTCAGTCGCGTTCACACACGGACTGCTTCCGCTGATGCGCCTGTGAGCGCAACGCCGGCCGGAGGTGGCCGCGCAGGGTTCTCAGAAGTTAGGTTGGGGAGCCATCCGGAAGGTGGGATCTTCAAGACAGAGGGAGGGATGCCGAGTAGCGTCTCGACCCACATAAAAAGGCGCCGCCCGATCCCTGCTAAGACCCGGACGGCGCCATGGACCTCGCATCCAGGCTCAGCCGCTGTCGCCGATCTTTGCTGGCCCCGCACCGCGCTATAACCTCAGCTCTGATCGGGCGCAGCCGACGGCCCCGTAGTTCGGAACCACAAGTGCTCATGCGACACGCCATGGCTCCTCGATGAGTTATCACCCGATATGCTGCTTGATAAGTGAATTAGCACTTGTGGCTGTCGACGCTGGATCAGACATAATTCCTGCTCAGATGCC # Right flank : CTACCTGAACCAGAACTCCACCGACATCCGCACCATCCAGTGGCGGTCGCCCTTCGGGTCAAGGGAGGCCATGAGGAGGGGCAACTACGTCAGCGTGCCCTTCAAGCCGGACGATTTGACGAGGCGAGCCCAGCGGGGGCTGCGGTGGAATTGTCGGGCGAGGTCAACGGATCGCGGCAGAGTTCCGTCTGTGCGGCGGTTTCGGAGTGCCCACTGCCATGCTTCTTGCTGAAGGCTGCGCCCGCGCGGCCTACCGCCGGCTTGAAGCGCGTCGTCGCCCGATACGGGTTCTGGTATGGCCGTGGGCTCCTCAGGAGAGAGTCGGCGGGCGACGCTTTGCCGTACCAGCCGGAAGGCCATCTCCAAGCCGCCGATCATCGCGAAGGCCGGCCATGCTGCTACAGCACGGCCGACGATGGATGGTTCAGCGACGGCCACGTTGGCGACGACGCTGGCGAGGCTGCCGACCACGAGAAGTGTCCAGGGCAGGACTCCGCCGC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTACAAGGCGACCGAGGATCGCAAC # Alternate repeat : CGTGGCGTTCGCCCTTCGAGGCGATCGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.10,-16.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //