Array 1 671049-672269 **** Predicted by CRISPRDetect 2.4 *** >NC_021021.1 Gordonibacter pamelaeae 7-10-1-b, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 671049 36 100.0 30 .................................... CTGGCATCGCGTTCGTAGCACTCGCATAGG 671115 36 100.0 30 .................................... TTCCACGGTGGACTAACGGCTTTCTCATAG 671181 36 100.0 30 .................................... TAACCTTAGCGCTGATAGAGAAAATCTTGA 671247 36 100.0 30 .................................... TTGAAATGGACACGGATAAACTGATTCAGG 671313 36 100.0 30 .................................... GGAGGAAGGAACGGAATGAAAAGCAAGTTG 671379 36 100.0 30 .................................... CGGTACACCGCGCCCGTGGACGTGTTTAGG 671445 36 100.0 29 .................................... AAGGTTGACGATAACAAGCTGTTACGCCG 671510 36 100.0 30 .................................... TATAGAGATTGATAATCTAGATACAAAATC 671576 36 100.0 30 .................................... CGGTAGCGTGATATGGCTTCGCGTCGTGTA 671642 36 100.0 30 .................................... ACACGTACAGGACGTGCAGCACGAAGTCAA 671708 36 100.0 30 .................................... CGTGCGCCACGCGCGCAACGAGGTGGCCGA 671774 36 100.0 30 .................................... GGGTTGCGGCAAGGCTTGTATCCATGAGGT 671840 36 100.0 30 .................................... TGGACGGTAGTAGTTTTATCGGTATGCGTA 671906 36 100.0 29 .................................... TGTTGGCGGCGCTCAAGGGACGGTCGTTT 671971 36 100.0 29 .................................... CCCGCGGGCCGCTCCCATGTGACGCGTCA 672036 36 88.9 30 .G......A............A......G....... CACCGCCCCTGCTAGGCTCTCGCAAGTCGC 672102 36 97.2 30 ............................G....... AAGCGGCTGATGCGCTCGTCGTATGTGCTG 672168 36 75.0 29 .....A.T..G.....G...C.....T..T...GG. TAATCTTGGGCGCGTAGCCTTCGGTAGCC 672233 36 75.0 0 ..........G...G.TGG.G.......G.A....A | T [672266] ========== ====== ====== ====== ==================================== ============================== ================== 19 36 96.6 30 GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAAAC # Left flank : ACTTATCGGCGAAGTGCTTGAGCGTGTGGAGGGCATGTTTCTCTCTGAGGATGACGTGCGTCAGGAGATTGAGACGGCGGGACGAACGCTATCCGAGCGGGTTGCCGCTTTGGGGTTGCGGCTTCAATCGGACTATACTTTTGACATACAATGGGAGATGCGGAAGTATCTGAAAGCTTTTGATTTCAGCGTTGATGTCGATTCTTCCGACACGCTCTTTGACAACCTGATAAAGTTCTTGAAGTTTGCATCCGACGCGTCGTTTAAAAAGCAGTTGGTTTTCGTGAATCTGAAGAATTTTTTGGAGACGGAAGAGGTTCAAGAGTTCTATCGGCAAGCGATTTTTTCAGAATTGAACGTTCTGCTGCTGGAGAACGTACCTGATGGAGCGAACTTTGAGTTCGAGAGAAAAATGTGCATTGATAAGGACTTTCTTCAATCATGAAGAAGCCCGCCAGTCGGCTTGTCCATCCTCCTGCAGAGAGGATTTTGCCCCAACG # Right flank : ACGAATAGGATGGCCAACCGGAGGGCATCGCTTTAAGATACAGGGGTGGGAGGGTGTGAGGTTGGATGCGTCTTCCGTCGTCGGTTAACAATTGTCGGTGGTTTTCAGGGCGATTGCCTGTACCATAATGGGGATAGATAGTTTATACTCGCACGTAGGGATTGCAAGCGAACCTGTTGCGAGGAGGAACCATGGCCGTCAACCGTCAGAAGCTCAAGCTGCTGTATCTCATGCGGATGCTCGAGGAGGAGACCGACGCCGAGCAGGGCCTCACGATGGCGCAGATCCTCGAGCGACTGGAGGCACAGGGCATCACGGCCGAGCGCAAAGGCATCTACCGCGATATCGAGGCGCTGCGCGAGTTCGGCTTGGACGTGCGCACCTATCAGCGCGCGCCGGTGGAGTACGCGCTGGAGCGGCGCGACTTCGCCTTCCATGAGCTGTTGCTGCTGGTGGACGCCGTGCAGAGCTCGCGCTTCCTCACGCAGCGCAAAAGCGAC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 2226624-2226260 **** Predicted by CRISPRDetect 2.4 *** >NC_021021.1 Gordonibacter pamelaeae 7-10-1-b, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2226623 32 96.9 34 ........................A....... CGAAGGCGCACTTGATGACGAAGCGATCATGCGC 2226557 32 96.9 34 ........................A....... GGCCGGCGGGAGGGGCGCCGCGTGGCGCTGCCCC 2226491 32 100.0 35 ................................ ATGATGCAATCACTTACCATCTGCGGTAGCTGCTG 2226424 32 100.0 36 ................................ CAGAAGATCGTGCAGGGCCCCCAAACGCTTTCCATG 2226356 32 100.0 33 ................................ AAAAACACGTCGCCAACAGTCATTAAAGATATG 2226291 31 87.5 0 ..........-.C.....T..C.......... | C [2226278] ========== ====== ====== ====== ================================ ==================================== ================== 6 32 96.9 35 GTCGCGCCCCATAGGGGCGCGTGGGTTGAAAC # Left flank : GGCCCCTGCATCGGCTCGGTCGGGCTCATCCCCGACCCGCAGCGGCGCAACGTCGATGCCCTCATGCTGGGGTACTCCCTGGCGAAGCCCGCCTGGGGCCGGGGCTACATGACGGAGGCGTCGCGTGAGGTTATCCGCTACGGTTTCGAGGAGCTGGCCCTCGGCCTGATCTCCTGCACGCATTACCTGTTCAACGACCGCTCCCGACGCGTCATCGAGAAGTGCGGCTTCGAACGCGAGGGCGTCATCCACGCCGCCGAGCCCGCCCCCGACGGCACCATGCAGGACCTGGCGACGTACTATCTGACGCGCGCGTCATGGGAGGCTGCCTCGCACGAGAGCGCGCGAAACGGCGCGAACCCGAAGCTCCGGCAATCCACTCAAGAGGTTCGCGCAGAATGACACGTTCAATGGTGCTGCCTGCTGGTTGCGCGAGGTGCTACGCATGTTGAAAAATGAATACTATAAGTGAAAAATGCACTATCCTGCATAAACTACCA # Right flank : TGGGATTTCCGCAACGTGCCGACGAGGAAGCAGGTCGAGCCCTCACAAGCTCGCGGGTTGGAACGAGCGCTCCCACAGTGGTTTCTTGCAGAACTGGTTGATCATGGCGGGCTCTTTCGCGAAAGCGGCGCCGCATGCGTCGATGGACTGGACGGGTTATTTTCCTTCGAAGACGATGCGGTTGCCGAAGCTCGCCCGCCCGACTTCGCGCAAATGCTATGGCGCACTCCTCGACGGGCGGTTGCAGCGAGCGGCGAGCCGACTGGTGCGGTCCCTGCACTGGCAAGGAGGCTCAACGAAGGTTGGAGCTTGCGGCGACCTCCAAGCAGTTGGTCTATAATTCTCGTTCGTAGAAAAACGGGGGAAGGGAATCCATGGCATCGGAGAAGCAGCAGGCGGGGCGCGCCTTAAGGCGGTTGGCGCGGAGGAGCCCGCTTGTCGCCCTCGCCATTGCGGCCGTGCTCGTGGTCGGCGCCGCGCTCGGATGGTTCGGCGCTGCA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCATAGGGGCGCGTGGGTTGAAAC # Alternate repeat : GTCGCGCCCCATAGGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //