Array 1 3499261-3497954 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MPCC01000001.1 Klebsiella pneumoniae strain AR_0043 scaffold00001, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
   3499260	    29	 100.0	    32	.............................	CCTCAATATTGGGATTTACTGATTGAATTGCG	
   3499199	    29	 100.0	    32	.............................	GCACACCTCAAAATACTGTTAATATATACAGT	
   3499138	    29	 100.0	    32	.............................	AACCGGTAAATTATTAAATGTTGGTGCGGCCT	
   3499077	    29	 100.0	    32	.............................	CATGGCTTACGATCAGCTGGCTGAGCGATTTG	
   3499016	    29	  96.6	    32	.........A...................	TGCCGGACGTTGTACCTGTGAGTTAATTCTTC	
   3498955	    29	 100.0	    32	.............................	AACTGATAGCACATCGCCTCAAGCTCTGTTGT	
   3498894	    29	 100.0	    32	.............................	GCAATAACGCCCTTCGGCATCACGCCTAACAA	
   3498833	    29	 100.0	    32	.............................	CCTGGCGGGGCGGTCTTCTTTTCTGGCCGCCG	
   3498772	    29	 100.0	    32	.............................	TCACTACTGCAGCCGCCCTCACTGCAGCACCG	
   3498711	    29	 100.0	    32	.............................	ATTTAAAATCTCCATTCAGTTGTGTTCGACAA	
   3498650	    29	 100.0	    32	.............................	GTCATATCATGGACGTCAAGCGGCATTGACTT	
   3498589	    29	 100.0	    32	.............................	GAGGCAATCAGGATTACATTTACCGGACATAC	
   3498528	    29	 100.0	    32	.............................	CGTGGCGGGTTGACCAGATCGGCGATCTGCCC	
   3498467	    29	 100.0	    32	.............................	ATTCCTGCGGGACCTGATAATAAAAAGGTCAG	
   3498406	    29	 100.0	    32	.............................	TACGATAACGCGCAGCAAACAGGCTATATCAC	
   3498345	    29	  96.6	    32	............................C	GGTCCAGTTTGGTTCTTTAGGGCGAACTACCT	
   3498284	    29	 100.0	    32	.............................	AAGGTACTCCATGTTTTTCATAAGCGGTATCA	
   3498223	    29	 100.0	    32	.............................	TTTTTTGGTACAGGTGGGAATACAGGCAACCA	
   3498162	    29	 100.0	    32	.............................	GCGGGAGTGCGAACCGCCGTCCCCGTTATTGT	
   3498101	    29	 100.0	    32	.............................	TAACAGGGCCATTTTCCCGGGTTGCCAGACGA	
   3498040	    29	  96.6	    29	.........................G...	GGGTTCACTTGGGTGAAACTGAACTAACT   	
   3497982	    29	  75.9	     0	...........ATTC...A......G..C	|                               	
==========	======	======	======	=============================	================================	==================
        22	    29	  98.4	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CGGCCGTCTGTGGCTGACGCAGCGCGTTTTGCGACAGCAGGGGGCCATTCGGATGCCACAATCTGCCCGATTATTGATTGAATCCGTCTACGGGGAAGATATCGCTATTCCCGATGGTTTAGCCAAAGCCGAGCAAGCGCAGTTGGCAAAATATTACTGCGATCGCGCGTTTGCTCACCAAATGCTCCTGAACTTCAAGCCGGGATATAGCCCCGATAGCAGTGATTTCCTGGCTGACAAGCTCTCTACTCGCCTGGCAGAAGAGTCGATCACGCTGTGGCTGGCGAAAAACGTCGATGGACAGTTGCTGCCTTACGCCTGCGGCGCGCATCAGTGGGAAATGAGCATGCTGCGGGTGCGGGAAAGCTGGTGGCGTAAACACAAAGCTGAATTCACGCTCCTGGCTGAAAAGCCGCTGCAGCAGTGGTGTGTACAACAGCATCAAAACCCGGATTTCGCCGTGGTGATTATTGTTACAGACTCGCCGGATTGCGGTTATT
# Right flank :  GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGTGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC

# Questionable array : NO	 Score: 6.18
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [9-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.65   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//