Array 1 5864-6909 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQJ01000136.1 Fischerella thermalis CCMEE 5205 NODE_246_length_9607_cov_32.997711, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 5864 37 100.0 34 ..................................... GAACCAACCGACCATTAAACCTGCTGTTGAACCT 5935 37 100.0 35 ..................................... CTTTGGGCTTGCTGGGCTGTACTTTGGGCTTGCTG 6007 37 100.0 35 ..................................... AAAGATGCAAATGATACGGTGCAAATAAATCTACA 6079 37 100.0 33 ..................................... AACACAATCGAAGAATGTAAATTGGTCAAACCT 6149 37 100.0 36 ..................................... ATTTGAAGGTAAGACACGCTCAATTGACTCAATAAT 6222 37 100.0 34 ..................................... ATGCCCTAAATCAAGCACAGAGAGCAACAGGTAT 6293 37 100.0 35 ..................................... GGGATTGAACATCTACCTCTCAATCCCTATGCACA 6365 37 100.0 36 ..................................... GTACCTCCAGTACTTTGCTCTCAAGTTTCTCACGGT 6438 37 100.0 37 ..................................... GGCGGCGGATATTCAAAATTTCCAGGATGAAAACGAG 6512 37 100.0 36 ..................................... CCAAAGCTTCTCATGAAAACCTCTAATAAACACCTA 6585 37 100.0 35 ..................................... GGTGCATTTTTGTGCATTTTGGGAGTGCTGCGCTT 6657 37 100.0 37 ..................................... GCTTCCCGATCTGCTTAATTGAGCAGCCCATACGACT 6731 37 100.0 35 ..................................... GGTGCATTTTTGTGCATTTTGGGAGTGCTGCGCTT 6803 37 100.0 33 ..................................... CGCTGGCGATCGCCTGGTGTACTGCTGTCCATT 6873 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ===================================== ================== 15 37 99.8 35 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : GGTGGCGTGGAAGCAACGCCAAAAGTTTGGGATCTAGCCGCCGCTTGGGTAATAGTTAAGGCTGCGGGAGGAAGTTGGATCTCACTCAACTCAGAACCTTTTCCTTTATCTGCTGGCGTTGATTATAGCGATCGCTCTTTCCCCACTTTGGTTGTCAGTCGTCCAGAATTGGTGTCTACATTTAAGCCATATTTGGAAAATTTAAAGATTTGAACTTTGGCACTCTCCAAGTTGCTTGATTGACTTTATGGTGCAGATGGGTAGGTGTAGAAATCAGTTAGCCCATAAAAAGTACCTTAATCCCTGTGACAGCAATAGTTTCATCGATTAAGTAGCGAAAATAGGTCTGCACCAAGAGCAAAACGCTTACTATACAAAGCTTTCAGGCTGAAATTTTGAGAGGCTCTCTTGTCACCTAATGGCTGAAATGATATTATGATGACAGGTTTGCACCACCGTACCTTGAAAACTAAATACTGTAAGGGTTTGAGTCCATAGCC # Right flank : GTGGTGAGATTTACGTATAGCACTTTAAAATTAGGAGATTTAAAAAAACCAAACTTATACGCAAAACCTTACTTCAATCTATTATTTAAAAATAAAATCAGCGATCGCCACCTCATCTTTACCTGTTATAGCTTCTTGGGGAGGACTCAGTAAAACAGATCGCTGCATTAATTTCTGACTTTCAAGACGACGTGCAACACGGCTAGGAATTCCGTAACCGTAAACAATATGTCCTTGTCCAGCCAATACTGCGACTTGATAATCTGGATTGGCTTTGACAAACTCAGCAATTCCTTCTGCCATTGTTTCATCCCATAGCACTTGCGCCAAAAAAAAGCGTTCAGCACCAGAACTATTACCGTGTCCAGCATTTTGATGCTGTTGAAAAGCTTGTAGTGATAACTGTTGATACTTTTGGTTATCAGTACGAATTTCTGAAAAAGGTGGAATAAATTTCCTTTCGGATGCAGTGAGACTTTCTAAACCTTGACGTGCAACTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 461-2223 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQJ01000172.1 Fischerella thermalis CCMEE 5205 NODE_293_length_11588_cov_31.025803, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 461 37 100.0 36 ..................................... CTGGCTGGAGCATTGAATCGTATCGCATCTCAATAT 534 37 100.0 33 ..................................... TCTTTATCAGCTTTCTTTTCAGCATCTGCTACA 604 37 100.0 34 ..................................... CCGCAATACCTTCAGTGGTGGCGTGGAAAGTAGG 675 37 100.0 33 ..................................... AGCAATAATTTTATTGTTGAGGGCAACGATTCC 745 37 100.0 35 ..................................... TGTGCCAAGTATGGGAAACACCCAAACTTAGCAAA 817 37 100.0 34 ..................................... GCCAATGGTCGGGCTATAGCAGCCCAAGCAGATG 888 37 100.0 34 ..................................... ATATTGCTAATGAGGGATAATTATTTTTAATTGC 959 37 100.0 36 ..................................... GAGAGGGATATTTTGGAAATTAAAGCTACTTTGAAA 1032 37 100.0 36 ..................................... CAAAATGGTCAGAATTCCAATGCCCGGTAGTATGAC 1105 37 100.0 35 ..................................... CACCGCCTGGAGATGGCAGTGCTGTGCATGGTAAG 1177 37 100.0 36 ..................................... GTGATATCCGGCAAGATTCCCACAACCACTAGTCCA 1250 37 100.0 34 ..................................... TTAGATGCACCAACTAAAAATTCCTTGGCTGGTG 1321 37 100.0 37 ..................................... ACTTACAGTGGCAATGTCACCAAGCTTAGTTACTGCT 1395 37 100.0 40 ..................................... TCTTTTGCTGTCTCACAGTCCAGGCAACCTTACCCAATAG 1472 37 100.0 35 ..................................... AGAAGATTTTTCTAGTTCGATGTAATCGGAGACTT 1544 37 100.0 34 ..................................... AGTTGGCCCGCCTCTGATTGCTCCTCCTAGAATT 1615 37 100.0 38 ..................................... ATTTAGTCCAGCGTCCGGCGTCTGATAAATCGGCTTAA 1690 37 100.0 34 ..................................... AACCCAGTCAGTTGACGGTGCAACTAAGCTACTC 1761 37 100.0 34 ..................................... TCTCACTTGCTTAATAGCTACGATGTCGCCTACT 1832 37 100.0 34 ..................................... ATTTTCAAATCAATCAATGATGCGATCGCAGGTA 1903 37 100.0 35 ..................................... TGGGCAATGACCATCAGCACTTCTTCAGAAATCAA 1975 37 100.0 34 ..................................... GAGCGATCGCATCAAGTCCGCCTTTAACAGAGGT 2046 37 100.0 34 ..................................... AAGTAGTGCGAGTTTCATCTTTTTTTTAAACCAC 2117 37 100.0 33 ..................................... CTGATCCCTAAGTCAAAAGCTGACGCAGAAATA 2187 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 25 37 100.0 35 GTTGCAACTTAAATAAATCCCTATTAGGGATTGAAAC # Left flank : CCACAAAGCCACAAAGACACGAAGAAAAATCGATTTTGAAGTTTTCCCAATGAAGGAAAGCGACGCCAGCAGAAAGTAAAAAAAACTGCAACAAGCATGATAATTTGTGGTTGAGCGTTTTTTTGAACCACAAAGCCACAAAGACACGAAGAAAAATCGATTTTGAAGTCCTAGTGTTATGGCGATCGCCCTAGGCTACTTGGGCTTGATTGGTGCAAACCTGTAGGTGTTTTTTGGAGCAGGTGAATTTTAATCGCTGGAAGCCTTACCAGTTCTGCTTTTGAAGGCTTCTAAGTGCAAAAGGGGTTTGCGGCAATTGTGAAATGCTTGCCAGATAAGGTTTTGAGCCTATTTTTTCTTCTCCACCCTTGACATTCCGATGGCTGAAAAGCTATATTCACTTTAGGTCTGCACCACTGAACCTTGAAAATAAAATACAGCAATGCTTCTGGAGTGAGCAG # Right flank : CTTAATTGCAATAATGTTTGAGATATAGGATTCCCAAATCATCCGTAAGAGACAAGCTCCCCGACTTTTCCAAAAATTCGGGGAGCTGAGCTTTGCGATTCTCACAAATGATATAGAAGTGCCATAGATAAACCAGAAGCGATCGCTCTAGAAGAGGAAGATATACACAATCTGATGCTTGGCACGGTGGGTAGTATTTTAAGTTGTGGGCGACTGTTAAGTAAGATTTATACAGACGCACTAAACTTTTCGGAGAAGGCGTCAATGAGCTTGTAGTTTTAACGTAGTTGTTTGGTTCTAAAATTTTGAGATTAAATCACGCACCTCTTCTAGAAATACAAAATGACAAATCGAGTAATTTTCATTGGATTATCACTGTTTTTATACGGAATAGCGCTTAGCTTACCAGCTCTTGCCTTCAAAATAGTTGAAATTACCTTTGGGGGGCAAAACAATAAAGTTGAAATCGCTACACTGACAGATAAAATTACTACAATGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 6884-6700 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQJ01000190.1 Fischerella thermalis CCMEE 5205 NODE_325_length_7375_cov_32.375458, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 6883 36 100.0 40 .................................... TTATAATAATAGGTAAACAACAGCCGAAGGTTTTTGTTCA 6807 36 100.0 36 .................................... CAGATGACCCAAGAGTTACGTACAAACAGCCAGACT 6735 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 3 36 100.0 38 CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Left flank : TATTTTGCCTAAGTCTTGGGAGTTTCAGTCAACGATATAATCATGGTTTGGCGTTATCCCGAACTCAGGTTACTCAAGAACAGTCAGGACTAGCATTACCTAGCTCTGGAATTCTTTGCCTGTTTCCTGTAAACTTTGTGGCTTTGCAATAAAGTCATTAAATTAATCAAAATGCGGATGAAAGGACTTGAACCTTCACGCCTCGCGGCACTAGAACCTAAATCTAGCGCGTCTGCCAATTCCGCCACATCCGCATCAGTCTCCTATGATAGCATAAAGGTTGTCCATAGCAATAATTTTTTACGAATTAAGAGCAACTACCGAAGTTCAGCCCAAATTCTGCAAATACCTATTTTTGTGTTGTGAACTTCGGTTGCTTAGTACATAAGGGTTTTAGGCTTTTTGTTTGGAGGAAGTGAGATGTTTTTGTCTGTAAATTTTCTGAACTTCGGAAATCGGCTCTGGAAATCTTACTGGGTAACGGTTTAAAATGGGACTCA # Right flank : ATTCCTGTAGGGGTGGGTTTGTAACCCATTCCTACCTGTCGCAGGGGAACCTAAATCATACCAACACGAGGCAATCGATGCTTGAATCCACAGAGAATTTCCCAAGAAATTGTGTTTAGTTGATTTGCCCAGTCATCAGCGGAGATTTGTTGTTTGCCATCTTTACCTAGTAGGGTGACTATTTCACCTTCTTGTATATCTGGTAGGGCACTAATATCTACCATCAGTTGATCCATTGTAATTGCGCCGATCTGTTGTACTCTTTGACCACGAATTAATACCTGCATTTTGTTGGAGAGATTACGTGGAACACCATCGGCATAACCAATGCCAACAACAGCAATTCGCATTTCTTGCTTGGCAATAAATTGATGACTGTAACTCACACCAGTCCCAGCAGCAATGGTTTTGACTTGGGCGACTCTGGCCCTGACTTGCAAAACAGGTTTTAGGTTAATTTGCGATCGCAAATGTGTAGCTGGGTAAAGTCCGTAAATGAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 2288-1682 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQJ01000279.1 Fischerella thermalis CCMEE 5205 NODE_479_length_3427_cov_27.783192, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 2287 37 100.0 33 ..................................... AGCACAAAATTACCTAAATTGTCTTGCAGGCTG 2217 37 100.0 34 ..................................... CTGTAGCCTTGGTCATTTCTTCGGTAAGACGCTC 2146 37 100.0 33 ..................................... ATTAATATTGTAGACTAGTCTTACGCGATAGAC 2076 37 100.0 35 ..................................... AAGAATTGCAAAATAGAAGTATATAAGCCATCAGA 2004 37 100.0 35 ..................................... AAGGACTGAATATTGCTTACACAGCAACAGTTGGC 1932 37 100.0 35 ..................................... TTACATAGTTGATTCAATCATCATTAAATATTTAG 1860 37 100.0 34 ..................................... TTGGGAAATAGCCAAATAGAATCCTGTGGCTTGT 1789 37 100.0 34 ..................................... AAGTGCTGAACCAACAGAATCATTTGAATCAAAA 1718 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 9 37 100.0 34 GTTTCAATCCCTAATAGGGATTAATTGAAATTGCAAC # Left flank : GTTCGTAGCGGTGATTGGTGCGATTATTGCAATTTTCTTGTACTACCAATTTACTCGCAGAGCTTACTAAAGCTTCGGTGTCAAGGGTAATGAGAATTGGGTAAGGGAAAAAATTTTTCCCTTACCTTTTTGTTTTTGAATATGCAAGCCTGAAAGCCCGAAAGTCCAAAAGCCCACAAGTAAACTGCGCGCTAATAGTTCAAGTCTACTTGAAGTAGACTAAGAGATTTTATAGTCGTCTTAAGACGACTTTAACTATAAGCCAAGGATTTTAATCCTTGGCGGTTGTTGTGTAAGTTTACAAGACGTGAACAAATAGGGATTAATACCAGGGCGTTGCATAAAATGGGGATGAATAATGAACCACCAAGACGCCAAGAACGCCAAGGATTGAGTTTTGGTCAATTAAAAGATAAAATAAAATCATCCCGCTTTCTCTGCAACGTCTTTAAGTTGTAATCTCAAGCAGTAAGCTTTAATTTGTCAAATGCATACTACGG # Right flank : AGCTAGATTCAGAAGCTTTGCTGTATATGGTTTTCAAGGTTCAGTGGTGCAGACCTAGACAAAATATAGCTTTTCAGCCATCGGGGTGTCAAGATGAATTATGAAAAAATAGGTCAAAAGCTTTGCTGGTAAGACTTTCAGAATTGGTGCAAACCTAATTTTGAGTGTAAAAGGGTTCAAAGCCATAACAGGTAGGGCTTATAGCCATTAAATTTGACTGCTTTTTTTAAACACCTACACCTTTGCACCAACTCTAAGCTGAAGAGAGATTAATCTTTATTTATCGACTATAGCAAAACTTACAACTACGCTTTTGGAGCTGGCTTTTGCCGTTTAGCTGGAACCACCTCGAACTCAAAAGTAGCAATACGGCGATCGCCAATATAAACTTCTATCTTATGCTTACCCATAGGATCACCAGTTGCGATCGTCCAAGAGTTTGTAATCACACCATCTTTGATTGAGTCTGTGCGTTGAATATTTGCTGCTGTACCGTCAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCCCTAATAGGGATTAATTGAAATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1552-1947 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQJ01000530.1 Fischerella thermalis CCMEE 5205 NODE_1017_length_3062_cov_27.500980, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= =============================================================================================================================================================================== ================== 1552 39 100.0 32 ....................................... TGATGGATCGCTGGTTGAACTGGGTAGATAGA 1623 39 100.0 33 ....................................... ATACAATTGTTAACCTATTTATTAGTTTGGGTT 1695 39 97.4 175 .....................................T. TTACTTGCTGCTACGCATCTGCGATACAGCGCTCGTAAATGCTCTGGCGTTGGCTCCATCTTATTTTTATTTTCAGCTTTTGTTTGCCTTGTGGTTGACACCTGTAGATTACCTTGAGCTATTACTGTCGCTTTGTTTTACCCTAGACAAGTCACACTATAATCGTTTACACTAT 1909 38 84.6 0 .................-.....G.......TC..G.G. | A [1936] ========== ====== ====== ====== ======================================= =============================================================================================================================================================================== ================== 4 39 95.5 80 CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAACAAA # Left flank : CCACATTATGAATTATAAATGCTGAACAATCATGTTGCTGTACGTCGTAGCTTATGACATTCCTTGCAACAAACGTCGCAAAAAGGTGGCTGATTTATTGGAAGGCTATGGGCAAAGGGTTCAATATTCTGTCTTTGAGTGTCAGTTGACTACAGATCAATACAATGAACTTCGCAAGCGGTTAAAGAAACAGGTAAAATTAACAGAAGATAATGTGCGATTTTATCCTTTATCACGGCATACTTTAGCACAAGTGGAAACTTGGGGAATTGGATCACCTGTGATTGAACCACCCAGTTCTGTGATTATATGAGAGCAAGTGCCGAAGTTCAGCCCAAGTTCTGCAAATGCCTATTGTTGTGTTGTGAACTTCGGTTCTTTATGGGATAAGGGTTTTAGCCTTTTTGGTTGGAGGAATTGAGATGTTTTTGTCTATAAATTTTCTGAACTTCGGAAATCAGCTCTGGAAATCTTACTGGGTAACGGTTTAAAATGGGACT # Right flank : ATAAGAAAATATTCTTGACTATTTTCCCATAGAACCTAAAAGCCTTACCAGCCAACAATCTGAAGCATTTTTCATATATTGTTCCGAATATTTACAGATATTCGACAAAACTGGATAACAATTAATACAATCTAATCTGGAGACTAAGAAAGGAAAATTAATTGTGTCAGAAGAATATTGGCGAGCGAAAATATGGGGTTTACTCCATGATCCTGTGTTAAAAGCATTGCATAGTAATAGTGGACGTGGAAAAAACAGCTTCTGGCCAAAACTAGAGGTTATGAAACCTTGGGTTGAGAAAGGCTGGAATCCAGAAGAATCATCTGGTAAAGCACTCAAGCATATCAAGCTAGCTGACTACATTGCCTCAGCAAGCGACAGAGGGGCGATTGGTAGCGTAAGCGCGAGTATCAATTATGGTCAGGGTAATAACTCAGAACAAGGATTAGAAATATCTCACCTATTATCCGGGGCAAAACGTAATTTTAAAATCAAGCAGC # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-3, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAACAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.80,-1.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 5377-3305 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQJ01000315.1 Fischerella thermalis CCMEE 5205 NODE_528_length_15710_cov_28.919542, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 5376 37 100.0 36 ..................................... CAAGTGCTGGTTTAAATCAGTTAGCGCGCGATCGTC 5303 37 100.0 34 ..................................... TCGATGCAGCTTAGTGATAAAAGTCCGGCGGGTG 5232 37 100.0 35 ..................................... ATTATTGCTGATTTGATTAAGCTGACAACTGTAAT 5160 37 100.0 36 ..................................... ACTGCCTACTACACCTCGAAGAACCAGAATTTTTCC 5087 37 100.0 34 ..................................... TACTATTGTTGTAAGTTATTTCTCGCCCCTGGTT 5016 37 100.0 34 ..................................... ATAACCATCATCAGAACTACTTTGAAATAAGATT 4945 37 100.0 33 ..................................... CGGAATTAATGGCCGTTTGAACTGGGACTTAGT 4875 37 100.0 33 ..................................... GATTTGGTTGAGCAATCCCATCTGAGAACCATT 4805 37 100.0 34 ..................................... CATTGCGATTATTTTTCACAGTTTTTAGACCTCC 4734 37 100.0 34 ..................................... AGGAAAGCGAATAATTTGTAAGGAATTGAGGCGG 4663 37 100.0 39 ..................................... AAGCTTTACTTCCGTGAGAGGTACACCAACCTAACAGAC 4587 37 100.0 35 ..................................... TTTAACTGGAATCCTTACATAACCGAAAGACTAAA 4515 37 100.0 35 ..................................... AATGGGCAACAATCAATCTACTTTGACGAAACCCC 4443 37 100.0 36 ..................................... ACTGGAACAGTAAAATCTATTTGTTCTAATATTGCT 4370 37 100.0 35 ..................................... GTGCTAGCTTCAAGCCACACTCGCGCCAATCTTTG 4298 37 100.0 34 ..................................... TTTTCCGAATGTTTGACGCTAATGAGCTGAGAAA 4227 37 100.0 37 ..................................... TAGTGTTTAGTTGTGAAAATCTTCGTTTATTATTTAT 4153 37 100.0 36 ..................................... GAGTTGTCGGAAAATGACAATGGTGAAGAAATACTT 4080 37 100.0 36 ..................................... AGCTATACCTGCTGGTTTAGTAGTCTTTACTATTGT 4007 37 100.0 34 ..................................... TATCTTGCCCTCATTCTCAAATTTTTCACCGAGA 3936 37 100.0 36 ..................................... TCCTCCTGCACCAGCTTTCACTTGACGAAGAACTCC 3863 37 100.0 39 ..................................... TACTGTGCCTGGCGTATCGCAAAATTCTTCAACATTGAT 3787 37 100.0 34 ..................................... ACGAATTCCTTCAAAGCGATCGCCTGTACACTTT 3716 37 100.0 41 ..................................... CTTACCACCAACATTTTTATTAAATAAACTAACCGCTTTGG 3638 37 100.0 38 ..................................... GGAAGACCCAATAGCTTTTAGAAACTTTATTCACGAGA 3563 37 100.0 35 ..................................... GATAACCGATTCCATATCCAAAGCCCATTCAAAGA 3491 37 100.0 37 ..................................... ACCACCCTTGGAAGTAATAAATTGAGAATTACCGGAA 3417 37 100.0 39 ..................................... ATGCGACTCGACATCTAACACTTTAGAACGCCAACTTGA 3341 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 29 37 100.0 36 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCCGAAGATAAACGTCGTACCAAAATCCACAATATTCTCAAGTCTTATGGACAGTGGATGCAGTATTCTGTATTTGAGTGCAACCTAACTGAAACTCAGTATGCTAAATTGAGGTCGCGGCTAGCAAAACTCATTAAACCTGATGAAGACAGCATCCGCTTCTATTTTCTTTGTGCTTGCTGTCAGGGTAAAATTGAGCGCATTGGTGGCGAAATGCCAATGGATACTACGGTGTTTTTTGCTTGATGATGGTGCAAACCAGTAGGTGTAGAAAAAAAGCAATCAATTTTTGGGGCTGAAATGCTGATTCTGTCTAAGTTAGAGACTGATTTGATGGCAAATGAGGTCTGCACCTTTTCTGTAAATCTTACCCTGACTAGATTTGAGCCATTTTATACTCATTTGCTCTTGACAGTGCGATCGCTCAAACGCTATATTTACTCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTAAATCGAGCA # Right flank : ATGGTCAACAATACCAGAACTAACAATTAAGCTAGAAATGAGAGGAATTAAAAATATCAACAGGGAGACAAGTGTGAACAGTGTAGTTCACTGGCAACAACGAGTAGGTAATCAAAGAGACTGGGTATGGCGGGGTTGGCAAACTCGCTACACCTATATTCGCCCTATCCAAAACCGCCCTAACACAACCCCCCTAATTTTGCTGCATGGGTTTGGTGCTTCTATTGGACATTGGCGACACAATTTAGAAGTGTTAGGAGAACAACATACAGTCTACGCGCTAGACATGCTAGGTTTTGGTGCTTCCGAAAAAGCTTGTGTGAATTATAGTATCCAACTTTGGGTAGAACAGGTTTATGATTTTTGGAAAACATTTATCCGTCAGCCTGTCATTCTCATAGGTAATTCCCTCGGTTCTTTAGTCTCCTTAGCTGCTGCTGCTACTTATCCTGAGATGGTGCAGGGTGTGGTGATGATGAGTTTACCAGATCCATCCTTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 815-994 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQJ01000453.1 Fischerella thermalis CCMEE 5205 NODE_844_length_4457_cov_26.340139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================== ================== 815 34 91.2 38 ....T..........A...G.............. CTGAGGATACCGCAATCTACAAAGATAAGTCGGTCTAG 887 34 100.0 40 .................................. CTCTAACGGTTGGAGCTTTGCCTGCTTTGAAGTTAGCTTG 961 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ======================================== ================== 3 34 97.1 40 TTTTCATCCCCGTGAGGGGTAAGTGATTTAAAAC # Left flank : TGGGTTAAATATAAAACAGGAATTTGATGAACAAGCACGGTTTTTATGACTTCCCTTGGTAGAGGTATGTTACCAAAAAGGATGATTTGACTGATGTTACTAATCCGAATACTGATGCATTGTTTTTGTTGATGAAACACCTTTAAGTAATGGTGTTGAATTTTGAGCATTGCATCTTGCTCGGTGATGTAAATTGTGGACATAAATTAAATGAAGTAAAAGGTTAAAAGTAAAAAGTAAAAAGATAAGATTTTTTGCCTTTGAAATTTTTACTTTTTACTTAATTCCATCTTCCCAAAGGCATATATGAGTTCGTATCTGCGTCCAAGCAATTTTTATATGAGTTCGTATATGATTTATATGAGTTGTGATTACAGCAATTTCAGATAGGTTGTGAAAATTCAAATATAAAAAAAACCCGACTTCTTCAAGAAGCCGGGTCTCTCCATGTTTGGAAATAAAAACTAAATATTTGAATTTTGAGATTGTTATGATTAGCA # Right flank : CTCTACTCTTACAGAAAGCTTGCCAAATAAAGCTTACACAACTGTAAAACTGAGGGGGGTCTATTTTACCTGTCAATAAACCACTATTATTGACAATGACCAGAGTCTGCAAGTAACTCAAACCCTGACACATTCAGTTATCTGAGGGGGTCAACGAAACAATCAGCCTTTGGTCTGTTAGAAGACCCCCTCAGTTTACACTTCTTCACAAAATCCCTTAAGCAAACTAGCTATTAGGTTACAAGCAGAGAATATGTTTTGATTAAATTTTCAAGGTACAGGTGTTGCTGTAAACAATAGCATAGCAACCAACACTATGCAATCTCTCTATTAAGGTTTCCAAATCATTGGTCTATATATCTTCACCTCTCCCATCAGACAAGCTACATACTCCCGCACTTTTAACTCTAAACACCTGCGAAAGCTAACTTTATATCCTGTATTTGTGTGCGTTAACTCAGATTGCAGCTTTTCTTCCCAGTGCTTGAGAAACTTTTTCA # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTCATCCCCGTGAGGGGTAAGTGATTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.82%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //