Array 1 44108-45166 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_UKVR01000012.1 Klebsiella pneumoniae strain EuSCAPE_IT099, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     44108	    29	 100.0	    32	.............................	TGAGGAGCTCGTTGACCTGCAGGCACATCCCT	
     44169	    29	 100.0	    32	.............................	TAATTCAGGAAATGAATTCTAAAATCGACTCT	
     44230	    28	  89.7	    32	..........-.CA...............	GCCATGCAACGTCTGAACGTCCGAAACATCCC	
     44290	    29	  93.1	    32	............CT...............	CGAATCCTCAGCGCGTGTCACGGTGACTGACC	
     44351	    28	  89.7	    30	.............A..-T...........	TTACTTTAAGTAGTGCATTTTTTTGTGTTT  	
     44409	    29	  93.1	    31	............CT...............	TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 	
     44469	    29	  89.7	    32	............CA............T..	CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC	
     44530	    29	  96.6	    32	.............C...............	GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT	
     44591	    29	 100.0	    32	.............................	AATCGACATCTCGTCCGTGGATGCGAAAAACA	
     44652	    29	 100.0	    32	.............................	TGACTTTTGCGCAGCCTCAGGGCTCCGGTTTG	
     44713	    28	  89.7	    32	..........-.CA...............	AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC	
     44773	    29	  93.1	    32	............CA...............	GCACCCTCACGGATACCTTTTGCACAGTGTTA	
     44834	    29	  86.2	    32	......T.....CA..............C	CTTAGAGAAGCAAAAACCCCACCGAGTCAGGG	
     44895	    29	 100.0	    32	.............................	TTACTTTTTGGCAGTTGGTAAAACACTTTTGC	
     44956	    29	  93.1	    32	............CA...............	GAAAGTAGGGGCTACGCCGGAATTCCGAAGAG	
     45017	    29	 100.0	    32	.............................	GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT	
     45078	    29	  93.1	    32	............CA...............	CACTACCAGATCCGAATGGACACCCGTAATGA	
     45139	    28	  82.8	     0	............CAC.......-.....A	|                               	
==========	======	======	======	=============================	================================	==================
        18	    29	  93.9	    32	GTATTCCCCCCGTGTGCGGGGGTTATCGG	                                	       

# Left flank :   GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCTTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGATATTTTTAGA
# Right flank :  ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCATATCTTGCAGGTTGCAATCAGAAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCACTAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGAACCAATTTATACTGTTTATATATACAGTGTTTTTTAGGTGGTCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCAAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCAT

# Questionable array : NO	 Score: 5.45
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTATTCCCCCCGTGTGCGGGGGTTATCGG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.10,-12.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [14-15] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.18,0.74   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//