Array 1 60769-61941 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMWS01000037.1 Gilliamella bombi isolate 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 60769 28 100.0 33 ............................ ACCGAGCATCAATCATGACAAAACAATTCAAAA 60830 28 100.0 32 ............................ ATTCAAAGTCATAATCATAGTACACCAATTCG 60890 28 100.0 32 ............................ TTTAACTGACACTGTTGACGTTGTTCCCGCTG 60950 28 100.0 32 ............................ AGTTGTTTTACCAGTTTTGTTATAGTCATCAA 61010 28 100.0 32 ............................ CTATCGCTTTTGCTTGGGCATTACACGAAACT 61070 28 100.0 32 ............................ TGTTTCAGAAAGGTATTCCATCTCTTTTTCAG 61130 28 100.0 32 ............................ AGATTGACATGGCATTTTTCCAAGCTGATGAA 61190 28 100.0 32 ............................ TCAGTTAAACACCAGTAGCTTTTTTCTATTTG 61250 28 100.0 32 ............................ GTGGCCGATTATTTAGAATCAAAATGCTCGGA 61310 28 100.0 32 ............................ ATCAATACAGCGGCTAGAAAAGACTACCAAAC 61370 28 100.0 32 ............................ TATTTGATCTCTGATAGCTGAAAAAGCTTTAC 61430 28 100.0 32 ............................ CTATGATCGGCTGGGTATGTCCATATGTTGCC 61490 28 100.0 32 ............................ ACCATATGGAGATTTAACTAGTGAACATAATG 61550 28 100.0 32 ............................ TGCGGCTAAAAAAGCTATTAATGCGCTAGCTC 61610 28 100.0 32 ............................ GATGATTTAACTTCTTTTCCTTTTCTTGAGTG 61670 28 100.0 32 ............................ CAACGTCTAGCGTTCTATCATCAGCCCAATAA 61730 28 100.0 32 ............................ TCTAATTGTTATTGATGTTACTAAACCTCCAG 61790 28 100.0 32 ............................ CACCCGGTAAAGAAATTGCCATTCACATTAGC 61850 28 100.0 32 ............................ GTTATAATCATCTTCAGCCATTCCGCACATCA 61910 28 92.9 0 ..................G....T.... | TA,T,T [61930,61937,61939] ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.6 32 GTTCACTGCCGTGTAGGCAGTTTAGAAA # Left flank : AACAAAGAACCAAGTACATATTGTTTAAAATCCCAACCATCGACAGCTCCACGGACTTCGTCGGCAATTTTCCAAATTTGTCGTTGTAGTTGATCGCGTTGTTGCGTTTCGGTAATTGATTTAGCGTTACTAGATGTCATATTTTTCAAAATTCCTAAATAAAAAATAGGTGCTGCCTAATTAGAAAGTAACTGATTTTTACTTTCATATTAGTCATTTTATAGCTACCTGTTATAGGTGTTATAGCATAGCTGATTTGTTGTTATTTTTCCATCTGGGGTGTTTATTAAAAACTCAGCCAATGGGTATTTTGAACTTTAAGGTTGGGAAATCTTAAAAAATAACAAAGCAACAAAATCTAAAAACAAAACCCTTTTTTTAGCTATATTTTAAAAGTCAATAAAATCAATAAATTAAATTTATCTCTAAAAAAAGGGTTTTTAAAACCTAAATACCTATTTGCCTTTTTACATACTATATTGATAGTATATTAGCTTCTA # Right flank : AAAAATAGAAATTTCTGTATAACTGGTTGATTTTAATGAAAATAAAAAATTAAATAAAATCAATACGCTACCTAAACGATTTTATGGGCGTAATACATCCCATAACATGGTAAGGATTATATGTTCATTGGTTGTTAGGTAATTCACTAATTCCTTGGTTTAGAAATTATCACCAATATTCATTATTTCCACAAAAGTTAAGACTTACAAAACCTAACACCGTATTCTAATTAAAAAATTGCATAAAAAACTAGCCAAGTTTTTTTAAAATGGCTATGCTTTAACCTCCTTAAAGGAATAGTTTATTAAACAATCAAATAAATATAAAAATTAAAATAAATCATTAATTTACTTGACGGGTGAACCGTAATGCATTATCATTTTAGACACCAGACACCAGACACCAGCACTGGCAAACCTATGTCTTAAATTTATCAGATAAACACACTAGTTGGATTTTTAACCCCGCCACGTTTATATCTTCAAAGTTATTTTTCAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3692-3840 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMWS01000051.1 Gilliamella bombi isolate 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 3692 29 96.6 31 ............................T AAATTTCGCGAACCGATAATTAATCGATTAG 3752 29 100.0 31 ............................. TAAACCCACTTCTGGGTTATCAGTCCAAATA 3812 29 96.6 0 ................T............ | ========== ====== ====== ====== ============================= =============================== ================== 3 29 97.7 32 GTTCACCGCTGCATAAGCGGTTTAGAAAA # Left flank : GAAACATACAGATTCGTCAAGCATTAACGAAGCTGGATTTGGTGACGGATATGTCCAGTTATCCAGTAATGGTATTAATAATACAAGTGAGACTTGGGACTTAACTTATACAGGATGCATCAATGAAATAAAAGAGGTTCGTGATTTTTTAAACTCGCACATCATAAAGTCGTTTAAGTGGAAAAACCCGTACGGTGAAGAAAAATTGTATCGAGTTGTGAATAAATCTATCGAATCCGAATTTGTTGGCGGCAGAGTTGTTTCATTATCATTCAAATTTATTCAAGCTTATTCACCTTGATTAAAAATTGTCAGAAAACGCATTGATTTTATTAAAGTTTTTTCTGGTATTTTTGAGGTTAACTCTACAACCCTTTTTTTTAATCGCTTTTTTAGTTTATTGAAAAATATAGATTAATTTTAGTGCTAGAAAAAAGGGTTATTTTCGAAAAAATGGCTAAAATTTAGTTAAAACAAAAGGCTATGTTTGATATAATCTA # Right flank : AAGTGTTTTGTGGCGTCTACAGGAAGCTCTTTCAACTTACCAAGATATGTCTTCTTCTCAGCCTCAGTTAATGAAGATTGCTTGATAATATCTTCCAGTTTATTTCAATTTTTGTTGATTTTGAAATAAAATTAGGTTAAGTTAATCCATGTTTTCAAAAATGGGGTAAATTGAAATATGCCTAGATTAATAAAGCCGCCAAAATTTGATATTTTAGAAATGACTAAAATATGGAGTGAAATTATAGCAGAAGAAAAAGATAACATAGGAGAATATATAGAAATTTCTCATTCTGCTGATGAAAAAGGTAGATATATTCCATATGATAAATTTCAATATACCGTGCCCAGACATCTAAATAAAGATTTAGCTTGGAAAATTGTTAAATCGAATAGATTGAGTAAAAGAATAAATTTATTTAAATTTGGAGATGATGGGATTATTGGTAATTTTATTTTAACACCTAATATACAGAAAGCACTTTCGGAAACAGATAGAAA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCTGCATAAGCGGTTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 31171-30662 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMWS01000025.1 Gilliamella bombi isolate 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 31170 28 100.0 33 ............................ ATTCCCACGATTCGAAAAATTCTCTTCCTGAAT 31109 28 100.0 32 ............................ AACCTCCATTAATTTTGCTATATCACTATTAA 31049 28 100.0 32 ............................ AATATGCGTTGAACCGTCATCAGTTTGCATTG 30989 28 100.0 32 ............................ TCTAACGTGTCCTTAAATTCTTCATTTAATTT 30929 28 100.0 32 ............................ GCTTAAGCGTGTACAGTCTCAATTTAAGTCAT 30869 28 100.0 32 ............................ TGATGCTTGATGCGTCATTAGACCAATAACAG 30809 28 100.0 32 ............................ ATTGCGTGGATGTGCGGTGTAGCTTCGTCCAA 30749 28 100.0 32 ............................ AATTTCGGATATTTATTTTTATCAAATTTCCA 30689 28 71.4 0 .................T..CA.GCCCT | ========== ====== ====== ====== ============================ ================================= ================== 9 28 96.8 32 GTTTACCGCCGAGTAGGCGGTTTAGAAA # Left flank : TCATCCAACAGCTCCTCTGAAAGCCCGTTGGTTTTATAATTATGAAATTGATAGCTTACATGATGATCATCAAGCCAAGTAAAAGCTTTTTTCATCGTGTTGCAGTTTTTGATACCGTAGATGATGTACATAGTAGGTGATCCAACATTGAAAATAATAATAAAGATTATAACAGTTATCGGCCTGATGCGGCAAACTAAAGGGATTTATTTGTTTTAATTCATATTAATACTCATATCTAATGTTAGTTGTTAATGCCAAATAGTCGCTAGTGAAAGCTTGAAATTTTAAATATTTTGGATGGTGAGTTAAGAAATGAATTTTTGAACAGATAATTTCACTCATTTTAAAAAGATCAAACTATTGCTAACCCTTTTTTTTAACAATAAATAAAATCAAATAAAAACAACACACTAAAAAAGCTCTAAAAAAAAGGGTTTTCAAAAGCAAAAATCCTATTTGTCTTTTGCGAAACAAGGTTTATATTATATCGGTTTCTA # Right flank : CAGACGAGGGCAGTGGATGTCTACCGACAGAATAGCTGGCTATGGTTATTAGCTGTGTTCAGAAATTTTATTGAACGCTTAAGCTAGTCATTAATAATCCATTATCAACAATATAAAATAAATATTAATAAATTAATTACAACATTTCTCAACAAAGTAACGCATAATTCGATTATCGACGGTTAGTTCGGGATGAAATGAGCAAGTCAAAATGTTATCTTGCTGCGCCATTACACAATGATTATCAATAAAAGCTAGCTGATTGACTTGCTCACCAGCTTTTGCAATATATGGAGCACGAATAAATACTGCTGGAATTTGCTCACCAATAGTTGGTATATCTAACATTGTCTCAAAGCTGTTAATTTGCCGACCAAAACCATTGCGTTCAACGCAAATATCCATCAAATCTAATAATTCGACTTCGTTATGAGTTGTCGTTTTGCCACAAAGCACTAGCCCAGCACAAGTACCTAAAATTCCTTTGCCTTGTTTAGCAA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGAGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 59924-60371 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMWS01000001.1 Gilliamella bombi isolate 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 59924 28 100.0 32 ............................ AGGCAAAGAATTTTTTGATTCAAATGATAAAT 59984 28 100.0 32 ............................ TACAAAAATCCCACAAACAGACCGCGGCCAGC 60044 28 100.0 32 ............................ TTGAGCCACCACCCAATCATGAGCCTCAACTA 60104 28 100.0 32 ............................ GAAATAACTTTAAATCTCATACCGTGATGATG 60164 28 100.0 32 ............................ GAGCGGTGAAAAGTCTGTAAATAACTGTAATT 60224 28 100.0 32 ............................ AACCAGTTAAGCCATTTGCTCCCAGTTCATCT 60284 28 100.0 32 ............................ CATTATTGCATTTAATCCCCTCTCTACAGAAG 60344 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 CTTCAATGCCGTATAGGCAGTTTAGAAA # Left flank : AAAGCAGATATACAGCAAAAATCATCGATAAGTGATTATGCTTTATTGATGCCTATCACAACAGTACCGGCAACGATAAAAGGCTATTTGCATTTGAGCCGTGTTAATCCTAAAGGTCAGAGTGCGTTAAGACGTGCCGAAAAAAGATTAACTGCACAAGGTAAATGGACACCTGAAGTGAAAAATAAAATGGTTGAAAAGTGGGGAAGCGTTCATTTGCAATACCCACATCTTCATTTGAATAGTAAAAGTACAGGTCAAAGATTTATTTTGTGGTTAAAACAAGAAAAATGCCCAGAGCCAGTGCAAGGCACATTTAATAGCTATGGATTAAGCCAAACAGCCACTGTTCCTGATTTTTAAATCATTAACCCTTTTTTTGTGGATAATTTTAACATATTGATTATTATTGATATTAAAATAGACTCAAAAAAAGGGTAAAAATTGGGAAAAGTGCAGTATGCTCTTTTACAATAAGGTCCTATTGAGATAAAATTCTA # Right flank : AATGTAAAGTTAAACGTGCATCAATAGTAGACACTTCAATGTCGAGTAGGTGGTCTTTTGTATAAAAGTAGAAATTTCTGTATAACTGGTTGATTTTAATTAAAATAAAAAATTAAATAAAATCAATGTCCTACCTGAGCGATTTTATGGGCGTAATACATCTTATAACATGGTAAGGATTATATGTTCATTGGTTGTTAGGTAATTCACTAATTCCTTGGTTTAGAAATTATCACCAATATTCATTATTTCCACAAAAGTTAAGACTTACAAAACCTAACACCGTATTCTAATTAAAAAATTGCATAAAAAGCTAGCCAAGTTTTTTTAAAATGGCTATACTTTAACCTCCTTAAAGTAATAGTTTATTAAACAATCAAATAAACATAAAAATTAAAATAAATCATTAATTTACTTGACATGTGAACCGTAATGCATTATCATTTTAAACACCAAACACCAAACCTATGTCTTAAATTTATCAGATAAACACACTAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAATGCCGTATAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //