Array 1 934259-935308 **** Predicted by CRISPRDetect 2.4 *** >NC_010694.1 Erwinia tasmaniensis Et1/99, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 934259 28 100.0 32 ............................ ATCAGAACCCCGTTCACAATTGCGTGTTTCAG 934319 28 100.0 32 ............................ ACTGGTTCGCTGCACGGGTCAAACTCAATTTC 934379 28 100.0 32 ............................ ATCAGAACCCCGTTCACAATTGCGTGTTTCAG 934439 28 100.0 32 ............................ TCAAGAAAATCAAATGGCCGGACAAGGTAAAG 934499 28 100.0 32 ............................ CAGATGACCAGCTAATAAGCCTCTCATCATCA 934559 28 100.0 32 ............................ AGTTTTTGGTTTGGTCGCCATATAGAATTATT 934619 28 100.0 32 ............................ TTAACCCCGGCACCAATACCGATAGAGTCATA 934679 28 100.0 32 ............................ AAAACGTGTTCATGAATCTCGGAACGGCTAGT 934739 28 100.0 32 ............................ TGTTTAGCGGTATCTCCGCATAGCGCATGGAA 934799 28 100.0 32 ............................ TTGCCGGGTAAGGCAAGGCAATGGCTAAAAGA 934859 28 100.0 32 ............................ CATCGTGGACGCCGCCCAGAGCATCACCAGCT 934919 28 100.0 33 ............................ CATCAACCTGATGGACTCCATGCTGCCCAAAAC 934980 28 100.0 32 ............................ AGTAGGGCGGGATAGTGCCGCATTTAATAGCC 935040 28 100.0 32 ............................ TTACCCGATGCTTCAATGAATCCAGACGTACC 935100 28 100.0 33 ............................ AGTTTGCGATTAGCCAAATCATGTCAGCAATAA 935161 28 100.0 32 ............................ AGACGCTGAACGAGCTTATTAACGTCTTAGAG 935221 28 100.0 32 ............................ AAAGACGGCACGTTTTTCACCAAAGACGATTT 935281 28 89.3 0 ...........T.........CC..... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGTTTAACATGGATAAACCATCGTTTGAGGTCAGGCAGGGTGTTTATGAGAAATGGACGATTTCGGGCGAAGGCGACGAGATGCTGCATCCCTTCCATATTCACGGCACCCAGTTCCGCATTCTGACGGAGAACGGTAAGCCTGTGGCCGCACACCGCAGCGGCTGGAAAGATACGGTACGCGTCGAGGGCGGGCGCAGTGAAGTTTTGGTGCGTTTTGATCACCAGGCCGACAAAGCCAGTGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATACCGGGATGATGCTGGGCTTTACCGTGGCGTGATAAAAGTGGATGACTGCCCGCATGCGAACTGCCGTGGCAGGGTTAACGCCCTGCGCACCCTTTTTTTTCGTCCGTATTTAACATATTGATTTATATAGTGAGATTGTCAGGGCGAAAAAAAAGGGTTTAACACGATAAAATGGGAAAAAGTGAATGCGGTAAGCTAGTTAGCGCTGTAGAGTAACG # Right flank : ATTTCGACATGGTCACCGGGGATCCGCTCTACACACTAATGAATTGCTCTACCAACAGATTAGATTATCTGTTGATTTCTGGTTATCATAACCCTCTCTGTACATGGAGTTTAGGACTACATAACATGGCCTTACATGGCTCGTTCGTTCTTAATGGGGCTGATTACTCTCCGCTTAGCTTTCCGGGAGTCGGAACGTTTATGGCGTTTTCCGGGAGTGGTGACAACAGGAACCGTGCCGGTTGTGCTCATATACCGACTGTAGGGCCTCTCCCGACAGGTAAATACTGGATTGTCGACCGATCCCAGGGTGGATTGCTCTCACAGAGCCTGTCTGCATCAAAAGATCTATTTAATAAGGTATTCCGCGATGCGCAGTTTGGCCATTCTGACTGGTTTGCTCTATGGCGAGATGATATGAGCATTGATGACTGGACGTGGATAAACAGCGTCAGGCGTGGGAATTTTCGTCTACATCCAGGAACAATATCGGAAGGCTGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 946115-947583 **** Predicted by CRISPRDetect 2.4 *** >NC_010694.1 Erwinia tasmaniensis Et1/99, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 946115 28 100.0 32 ............................ TTCAACAAGAAGCGCGATGAAGAAATTGCTGC 946175 28 100.0 32 ............................ GTATTGACTGAATCGGCAAATTCCCATCAGGT 946235 28 100.0 32 ............................ TTTGAAACTGGCGAGAGAGTCGGCGTGAAACA 946295 28 100.0 32 ............................ AACTCGTCTAGCCAACGCCGCCCGCCGCGCTC 946355 28 100.0 33 ............................ AACTATGAGGCACTCATTAATGTCTTTGTGCGG 946416 28 100.0 32 ............................ TGGCATCGCTGAAGCTGGGCCTGAATCATGAC 946476 28 100.0 32 ............................ GGAGAAATGGAAAGCATTCATGACCATGAAAC 946536 28 100.0 32 ............................ CTTCTGGGCCTGTCCAGTCAGTTTACGACCTA 946596 28 100.0 32 ............................ TGTTCGGTGCTGCGAATTCCAGTGTGGCTTAT 946656 28 100.0 32 ............................ TCAGAACCCCGAATTGCTTCGTCGATATAGTC 946716 28 100.0 32 ............................ TGTTAAATGAACACCCAAGATTTTGCCTACGT 946776 28 100.0 32 ............................ ACACCAACTTGGCCCGTTTCCCACACCAACTT 946836 28 100.0 32 ............................ TGGCATGGTGTACCGCCTACCAGTACATCGGG 946896 28 100.0 32 ............................ ATGAATATAAATTCCGTTTCCGGGTCTTTCTC 946956 28 100.0 32 ............................ ACCCAGGTGCTTACCCCAGAGAACTAACAAGT 947016 28 100.0 32 ............................ CACAGGCAGTCTGATTTGCACTGACATTCTGA 947076 28 100.0 32 ............................ CGGCAAACTTTAATAGCTGCATGCGGATTCCT 947136 28 100.0 32 ............................ GCGTTCCGAACATTGAAAATCTCCGCATCATC 947196 28 100.0 32 ............................ TTCCAGCTCACGCTCCGTCCAGTCACGCATGG 947256 28 100.0 32 ............................ TTCGGGAACGGCTCGGAATAACTGTTGTGGCT 947316 28 100.0 31 ............................ AACGTCTGATTGGTATCGCATTCCACGCTGC 947375 28 96.4 32 .................T.......... TGTGATACCCGGAAGCGCTTTTAATTCTGCGG 947435 28 100.0 32 ............................ GGTAACGATGGGTATGAGATTAACTGCGGAGA 947495 28 100.0 32 ............................ ATGAAAATCGGCGAAAAAATTAAACAGATCCG 947555 28 82.1 0 ........G.......A.C.....A.T. | C [947575] ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAG # Left flank : GATGACTTAAGCTCACTACAGCAAAGCGGCTGGGATAAGGGCCTGACGGATTATATCGCCTGTTCCGCCATTGACCCTGTTCCGCCGGGGGCGGCGTGGCGCACCGTCAGGCGCGTCCAGGTGAAAAGTAGCGCTGAACGCCTGCGCCGACGTTCGGTGAATAAGGGCTGGCTAAATGAAGCAGAGGCCGCAGAGCGTATTAACGTACTGAGCGAGCAGCGCAGTGATTTGCCGTATTTGCAGATAAAGAGTGGTTCTAATGGCCATGCCTGGCGGCTATTTATTGAACATGGCCCGCTTGTCTCTGTGCCCGTCAACGGCGGCTTTAGTTCCTATGGGTTAAGTGCCACTGCCACCGTGCCCTGGTTTTAACCCTTTTTTTTCCGCTAACGCTAACCTGTTGATTTTAGGTGGCGTTAGCGGGGCGTCTTAAAAAAGGGTTTTATGGCAAATTTGAGGTTTTTACTTGTTTTATAGCGGGTTAGTCTGTTTTATTAACA # Right flank : GTACCCGTCAAAGCAAGCTATAGCAGCGCAGTGACTGCTGCACTGCTATAGAAATTAACGACAGTGGGGCGATAGATAACAAATAAACAATTGTTTCTGCTCACGGCTGAAATAACGTCTGACTGAGAAAAATTACGGCCAAAGATGAAGTTAATTTTTTTTATAGAATTAAGTTCCTGGTGTGACTATTGAACATCTGTCTTCTCTAAGGTGATGGAGAGCTTATTACGAAAAAAAGCGTATCGTTACCTTTAAAAAGCACCCTTGATAAAATTTCAGCTTAATGATAAGTGCAATTGTATTTTTTGCCCATTTATCGACCCGTTTGTCGGCATTTCAATAAGTTAAATTGATGATAGTGATGGGGGCAAGGTGTTAAAAAGAACTGCTTGAGATCCGTTAAATCAAAGCGTAACCTCCTTTGTAGGTGAAAAAATCACCGCATGCGAGAGTGAAAAGGAGGACGTTATGGATAAGGAGAGTAACTATATGGAATTTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //