Array 1 722423-722590 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP035368.2 Haemophilus parainfluenzae strain LC_1315_18 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    722423	    36	  88.9	    30	..AA..A.A...........................	CCGCACTTTTAGCGGTAGCAGATATGCCGC	
    722489	    36	 100.0	    30	....................................	CACATTCTTCTACCTTGCAACGGTGTTCTG	
    722555	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
         3	    36	  96.3	    30	GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT	                              	       

# Left flank :   GCCTTACCATCGGTGAAGTGAAAGGTGATGAATTCTGCGTGAATTTAATCCCTGAAACCTTACATAGAACCCTGATCGGCAAACGCCAAATTGGCGATTTAGTAAATATTGAAATTGATCCTCAAACACAAGCGATTGTAGATACGGTGGAGAATTATTTAAAAGCAAGAGGAATATAGTTAATTAAGATTACTATAAGGAGGAAATATGTTTAAAGATGAAATTGCTCTTATTCGCTTTTTAGGCAGAGAGTTTATTGTCGTGTTTAATGTGTTTTTTCTATTTCCGCTTTCAATTATTTTAGTGCTGATTGGCGTTATTCATGGTGTAATATGGAATGTACTTTTAGGTATTGTATTTACTTACCTCGTATTTCTTGTCTTATTTAGGATATTAATCTATTTTTTATATAAAAAATGGGAGAGAGAGCATCAGAAAAAAATGCAAGAAGAGAATAAAGTTAAATACATTATTATTAAATAATAAATTTATACTGTATT
# Right flank :  TCCCAAAATCCGAAGAAATCGCCGTTGTATTGGTTGTAGCAACAGTTTTATCTATGGCAGTTAAGACACTCACTCTTTCTTGGTTAAAGCGTAGTTGATGATGCAAGATTTTGATTAATTGCTGTTTTGATAAAGGACTAAGATTTTTGGATAGTAATTCTTTTTCGAGCAAGTTCCATACCAGCAAATCAACAATAGGGCGAAAAGGTTCAATAAAATCATCAGCCAAATTAAAGGCATTAAGTTCACTATGATGAAATAAGCCTAATTGAGGTAGCCAACCATAAAGTACAAGGCTTCTTGCCACAGCTGAACGCATACATAAATGAATATTTTTGCCAAGTTCATCTACTTGATATTTTTCAAAGGAAGTAGCAAGTTTTATGCCGACACTTTGATGAATACCATCTTTGATCTTAGATTTATCTAAATCATGCTCTTTAATATCAATATTACCTGTGGAACGATTAAGTCCATTAAAGTAACCCAAAATAGTTTTC

# Questionable array : NO	 Score: 5.17
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:60.71%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [86.7-60.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.77,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//