Array 1 131645-131311 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAON01000003.1 Gluconobacter thailandicus NBRC 3255, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 131644 29 100.0 32 ............................. GCTTTCTTTTTTAGCGCTCTGCTTGGACCCGT 131583 29 100.0 32 ............................. ACTGCACGACATGTCTGAACGTGTCTGACGGG 131522 29 100.0 32 ............................. AGCCGCCTTCCGCGTCAGATTGGTATTGAATG 131461 29 100.0 32 ............................. CTGTCTGGCGCTGATCTGACTCCAGAAGGCGG 131400 29 100.0 32 ............................. GCCCGCGACAAAACAGGAGGCTGCTCACCAGG 131339 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTGTTCCCCGCACGTGCGGGGATGAACCG # Left flank : GCCGTTCCCGGTTATACCGAAGCGCGGCCTCCTGCAGCACGCGGATCATGGGAATCATGGGGCTGCCCATATCCCTGATGCCAGCGAGTTCCCGGTTGCTGGCGGAAAGCAGGGCCGCCAGCGAACCGAAGCGTTCCAGAAGCGCCGGGACAAGACTTTCGGCTTTTTGTTCACGACCCGTAAAAAGATGGACGATCAGCCTCAGAAGTGTGTCGTCGTTCAGATGACGCCCTCGCCCACTCAGGAGTGCAACAGGAGCAGGAATCGTTTCGTGATCCGCTGCCTCCGGCGCGGCTGTAGCTGGTATGGCCTGAAGGAAGGGGCTTCCCAGACAGTCAGAAAATCCATCTTCAGAAGGCTGAGTGTTGGTCATTCGTTTTTCTGGCACTGTAACCCGGACGAGATCAAGGCGTCGTCAGCCTCTCTCGGAAAGGTTGAAAAAATCGGTAGATTTTTCGGGGGCTGTTTTTCTGTTGGAAAACAGTTATCTAACAGGAAGA # Right flank : GGCTCAGGAGAACACCAGCTTTCTTTCATTTTATGTTCCCTGCATACGCAGGATTTTTTTTGAAGCAGGGTGTGAGGCTTAAAGGAGACCTTCCTGACGTAGGCTGCTGAGTTTTTTGTCTTCATTGCTTAGAAGGATGTCATGCAAGACGATGGAAAGTGGCTTAAGTGCGGTTTCCAGAGTTCTTGCAGCCGTTGACAGGGCTGGTGATCTGAGAGCGGGTTGGACATGCAGGCCGATAATGGCGGTAGCATGTAGCGCCAGTGCGCGAATGGCGATGGCGCGGTTCAGGAAGGTGATATCCTCCTCTTCGGGGGCCGCTTCATCCGCAAGGAGGCGGTTGCGGTTATCCAGATAAAGGATGCGAAGCTGTCCGGAAACCGCGCCTTGTAATGTCGTTTCAAGATAGCTTGTCAGTTGTGGCCAGTTCCCCAAAACAGGACGCTCGCGGCTTTCGGCAGAGGCAAGACGTTCTGCGGCGACTGACGGAAGGCGAAGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 48918-49416 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAON01000005.1 Gluconobacter thailandicus NBRC 3255, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48918 29 100.0 32 ............................. CCAATACGCACGCCCTTCTTCGTCTTCCGATA 48979 29 100.0 32 ............................. TCATTGGGCAGAACTGAGACCTGCAAAGGAAG 49040 29 100.0 32 ............................. ATAGGAGTCATCCAATCTAGCGCCATTCCTGC 49101 29 100.0 32 ............................. ATGAAAACACCAACGATCAAAACGCCAATTCA 49162 29 100.0 32 ............................. GTCCATAACGCTAAAGCCCGCTTTCTGGCATC 49223 29 100.0 32 ............................. ACGCCGGCAGCCGTGTAGCCGGTCAGAGCAAT 49284 29 100.0 32 ............................. GACGGCATTTTTCAGAAGCACGCGCGCATCAT 49345 29 93.1 14 ................T........G... CGTGGGTCTCCGGC Deletion [49388] 49388 29 79.3 0 ...........G.AA.......C...GG. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.9 30 GTGTTCCCCGCATGTGCGGGGATGAACCG # Left flank : TCGGGAACTGCGCGTCCCGTTCCGGACGGCTCATCATGTCACGGGGCGTCTGGTCGGACTGGCCGAGCAGCGCGGTTGTGATCTGGCGGATCTGTCCCTTGAGGACATGCAGGCCGTAGAGCCGGGAATCAATGCTGGTATTTTCGATGTTCTGACGGTTGAATCCTCACTGGCTTCCCGCACCAGTCTGGGCGGAACTGCTCCGTCCAACGTGCGCCAGCAGGCTCAGGCCTGGCTGGAGAAACTTGGAGACGCTGCATGAAACGTTTTCTGCTTGTTGGCCTGACCCTCGTAGCGCTCAGCACTGGCCTGAGCGCTTGCGGGAAGAAAGGGGCGCCACATGCACCCGGCCCCGCTTCCGACATCACCTATCCCCGGAGTTATCCGCCTGAATAACGGGCTTTCAGATAAGTCTTACAGGGGCCGAAAACAGGCCATAAAAATCGGTAGATTTTTGAGGGTGGAATTTTCCCTTTTCTGTCAGTACCTTGCCAGGAAGA # Right flank : GACTACTGGTGGCCGCAACTTCGATCTCGCCAAATAGTCCTCGCCTACTCGGGCGTGGATCTACCGCGAGAAGCGATTCCACTTTCTTCAGCCTCAGCGTTTTTCTGAAAACTCTACAGATGCAACAGCCGCCATCAGCTGTCCGCCAGAGCCTGGACTACCAGCGGGTGCGTCAGAACGTTTTCTGCAGGCCAGCCCATCGCCCTGAGCGCTCGAACCCCCTCTGCACCATCCCTTTTGGAAAGCTTCTTTCCGCTCTCATCCAGAATAAGAGCGTGATGCCTGTACTCAGGTTCAGGCCATTTCATCAGGGTCTGAATTACACGATGAATGGATGTCGCAGCGTAAAGGTCCTGCCCTCTCGTGATGCAGGTCACGCCCTGAAGGGCATCATCGTGGGTGACGCACAGATGATAAGACATGCCCGTATCTCTGCGTCCCAGAACAATATCACCAAATTCATCCGCACGCCCCGCAATCCGACCATGACCCGCTTCATA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123439-124016 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAON01000005.1 Gluconobacter thailandicus NBRC 3255, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123439 29 100.0 32 ............................. GCCAAACAAGCCCACTTTATACCCTTCTGTTT 123500 29 100.0 32 ............................. GCCTTCTTAACCTTCACGTGGTTTTCGACAAG 123561 29 100.0 32 ............................. CACTGCCAGTTCTCCAGTTCGATCAGCTCGCC 123622 29 100.0 32 ............................. GCTGCGATCGCCTGCGTCAGAATCGTGCCAAC 123683 29 100.0 32 ............................. ACAGGCGATAACGATAACGGCACGATCCTGCT 123744 29 100.0 32 ............................. GATAGTCTGGCTGTGACAGGATCGATCGGCAT 123805 29 100.0 32 ............................. GCGGAGTTCGCTCGCCGCCAGCAGGATACCAC 123866 29 100.0 32 ............................. CAGGTAGATTTTCCACTGTAACTGCCATTCTG 123927 29 100.0 32 ............................. TAGCCCGGAAATCCCATGCGGTTGATGACATC 123988 29 79.3 0 .......T...........A.G.A..T.T | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.9 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CGCCTCGTCCCCATGATCGAAGATGTTCTCTCCGCAGGAGGCCTGTCACCCCCTGAAGCACCGGAAGAAGCCATGCCTGTGGCCTTTGAAGACCCGGAAGGATTGGCCGATGCTGGTCATCGTGGTTGAAAACGCTCCACCGCGACTGCGAGGGCGGCTCGCCGTCTGGCTGCTGGAGATCCGCGCAGGAGTATATGTCGGTACCTATGGCCGAAAAGTACGCGAGATGATCTGGCAGCAGGTCTGCGCCTATATTGAACAGGGAAACGCTGTCATCGCATGGGCTGCTCCCAATGACGCAGGCTTCGAGTTCGACACCTGCGGCGCCAACAGACGATGCCCCGTGGACCTTGACGGATTTCGTCTGGTCGAGTTCGGTCCAGAAGCTGCCCTCCCCCTCCTGCCCGGCCCCCTCAATTCACCACGAAACCGACGCTGAAAAATCGGTAGCTTTTTGAAGTGGAAGATTTGCACCCATAATCATATACTTACAAACAAGG # Right flank : TTTACCGTCAGGCTTCTGAGCCCTGCACAACCGCACTCATTCTCCCAACATTCTTGCACACAAGGAGACAGATCATGAGCAAGCTCAGTAAAGAGGAACGGGACAGCCTGCCTGACAGGGAATTCGGGCTTCCTGAAAAACGGGCCTATCCCGTCGATACAAAGGCCAGGGCACGGAATGCGAAAGCCCGTGCCACGCAGGAGATGGAACGGGGGCTGCTGACACCGGAAGAACGGGATGAGATTGACCGGGCAGCAGATCGTAAACTGAACAAAGACTAAGCCAGAATCAGAAACGGCCCCGGATCACTCCGAGGCCGTTTCATCATTCAATTCCGCAGTCAGTGAGCCTGCGCTGCCCGCAATGGAGCATCTGCCGGAACATCCTTGAGCGGAATGCCCTGATACTTGCCCGTCAGGGTCTTCAGGAACGCAACGATGTCTGCAACATCCTGATCACTGATATCATGATCGGGCGTTTCGTAACGCGCCATGGCACGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //