Array 1 601047-601335 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR215979.1 Fusobacterium ulcerans ATCC 49185 isolate Fusobacterium ulcerans 81A6 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 601047 29 100.0 37 ............................. AAAGTATACTTAAATCTAAATGGAATAAGTTTAAAAA 601113 29 100.0 36 ............................. TCTGGTAATACCTCTTTACAATATGCTTCAATTAAT 601178 29 100.0 36 ............................. ATAAACTAAGGCTTGAATGGTCGGAAGCCGAAACAG 601243 29 100.0 35 ............................. AAAATAAAAGAAGCCGCTTTGTAATTTTCGGCTTC 601307 29 89.7 0 ........A...T..............T. | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 97.9 36 ATTGAATAGTAACTTAGAAGTTTTTAAAT # Left flank : ATACCTGCTCCAGTGATGGGGGGAGTTTCAATAATATTATTTGGAATGATATCTGCAGTAGGAGCAAGAACATTAGTGGATGCAGGATTAGATTTTTCTAATTCAAGAAATCTTATTATAGCATCATTGATATTTGTGTTTGGAATAGCAGTAGATAATATTGTTATATGGAAAACAGTTTCTCTTTCAGGACTTGCTCTTGCAGCTCTTGCAGGAGTGATTTTAAATAAAGTTCTTCCACTAGATAGAGAAGTGACAATAAATAAGAAAATAGATTAGTTAAAATAAATCCATTGATTAAAGAATTTTGGTTAGTGGATTTTTTTAATTTCCAAGTTAAAAAAACAATTTTTGATTTTAAATTTAGAAATTTAGATTATAATAGGAGAAAAAAACGAAAAGAATTAAATACTTATTTAGGTTGGAAAAAATTAAAATGAGATGGTATAATTAGAGCAGTAGAGAAAATATTGAAAAGTAAAAGTTGTGAATTTATGAGC # Right flank : TATATATTGTAGCATTTGAAAAAAGAAAATAAAATATCAAATAAATTCTATTTTAGATTAATGTAGATAGTATAGATGCCTTAGAAACTATTCCCATAAGCTCTCCATTATCAATAACTGCAATAGGGAATTTAGTATTTGCAGCAATAGGAAGAATATCGTTTATTAGTGCATCCGAAGATGTAGTTGGAATTTCATTGAATATATAATCAGAAAGAAATCCATTTTCATTTCTACATTTAAGAGCATTGTCAATTGTTATTATTCCCAAAAATTTCATATGATTATCTATAACATAAGCACTTGAAACTCTGTTGCTTTTCATTTCACGAATAGCAATACCTGCACCTTCTTTCAAACGAATTATACAAGAAGGATTAAACATTATCTGCTTTACACTTATAACTTTAGTTTTATCAGCACTGTCAATGAATTGACGGACATAATCATCAGCTGGATTAGCTGACATATTTTCTGGTGTGTCTAACTGAATAAGTCTT # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAATAGTAACTTAGAAGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 1271511-1272119 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR215979.1 Fusobacterium ulcerans ATCC 49185 isolate Fusobacterium ulcerans 81A6 chromosome 1 Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 1271511 29 100.0 35 ............................. AGATTTAACAAAAAATTCTTTAAATATAAATTTTA 1271575 29 100.0 34 ............................. GTTCTTTTTTTTTATAAAAATTTGCTCTTGACAA 1271638 29 100.0 36 ............................. AATGATTCAATTATTAAACGGAGATGCTGTTGAAGA 1271703 29 100.0 36 ............................. TGAGTAATAGTCGTTGCTGCCTGATTGTGTGCACTT 1271768 29 100.0 35 ............................. ATGACCTTAGTCCATTAAAAGCTACCATTTTAACT 1271832 29 100.0 36 ............................. CAGATTTTTTAATAGGTCCTTTTTCCACTAGTACAG 1271897 29 100.0 36 ............................. ATTGTTAAATTATCACCTACTATTATTCTTCCTAAT 1271962 29 100.0 35 ............................. TACAGGAAGCTTAGTTTTATGCAAAGTAAGCAATT 1272026 29 100.0 36 ............................. TTTTTATCAACACCTAGAGAAGCTATGTATTTTAAA 1272091 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 10 29 100.0 36 GTAGAATATTAACTCAGAAGTCTTTAAAT # Left flank : GAAAATAAAGAATTCGTTCCATTTTATATAAAGGAAAAGATGTAGATGAAAGGTAAAAATTATAATTATATATTTCTTTTTTATGATATAAATGAGAAGAGAGTAAATAAGGTTTTTAAAATATGTAAAAAATATTTAAGTCACCACCAAAGATCTGTATTTCGTGGGGAGATAACACCTAGCAATTTAATAAAATTACGTTTGGAATTGAAAGATATAATTGATAAAAAGGAAGATTTTATAAGCATTGTGAAATTGGTAAGTGAGCATTATTTTGATGAGGAAATAATAGGAACACCTTGGAAAGATGATGAAAATATATTTATATGATTTCCAAGTCTAAAAACTAGCAATTTTATTAAAGAGTTATTTTAAAAGAGATTGAAAAGATAAAAATTTAAAGTATAAAAAATTGTATAGCTTGGAAAAAAAGATAAAAAACCTTTTTAAATTCAATAATAGAAAAGATCATGAATAGTATGAATTCTTTTTTCATGAGG # Right flank : TATTCATTAGATTAAATATAAAAAACAGGCTAAGAATTTTTTAGCCTGTTGCAATATTAGCAGTTCCTAAAAATTGATTTTTAAAGAATAAGTATAAGATATCAGTATCCAAAGGATTGTATTTAACAATAACTTTCTTTCCTTCCAGAGAGGTTAAAAAATTATTAGTGTAAATAAAATTATTAAATCTTAAAGAAGATTTATTTATTTTTCTGCTGGCTTCCTGAAGAAAGATATCAAATTCACGAACATATGGAACATCCTGTATCATTTCATATTTAAGTAAAAAATCATATTTTTCATTATCCAAATAGATATATGAATCAAGAAAGTTTTTTAAATTTTGATATGAAAGAATTTTATTATTTTGATAATAAAATTTCTCTATATCTTCCTCAAGAAAAGAGATAAATTTTTTAATTTCCTCATTTTCAGTAAAATATTCAGATATTTTTATAGAAGTATTATCATAGATTTCCTTCAATATTTTTTTGTTATTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAATATTAACTCAGAAGTCTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 1594792-1594312 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR215979.1 Fusobacterium ulcerans ATCC 49185 isolate Fusobacterium ulcerans 81A6 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1594791 29 100.0 33 ............................. CTATTGTTCTTGTAAAAAAAGGCTTCAAACTTA 1594729 29 100.0 36 ............................. TTCTCTTCTTGAGAGATTAATCTGTTACTTAATGCA 1594664 29 100.0 37 ............................. CCATCATTATTCCATGCATAATCATCATATCTTTTTC 1594598 29 100.0 34 ............................. GTTATCAAGCTCGTTAAATTCTTCATAAACTTTT 1594535 29 100.0 36 ............................. TTTTCTAGTTTTTTCCACTATATTATTTAATTTTTC 1594470 29 100.0 36 ............................. GTGTCATAAAGCTGGAAGTATAGGAAAAAAACATGC 1594405 29 100.0 36 ............................. AGAAAAACCAGAAGAGATTATATTTTTAGGAGGAAA 1594340 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 100.0 36 ATTTAAAAACTTATCAGTTGATATTCAAT # Left flank : GTAAAAGCGGGAATGTGTGTTTAATATCATATTTGTGTTTTATAAAAATTTTTTCTTGCTTCCAACTAAAAAATAACTATCTGTAGGATAAATAAATTGACATATAGGCAGTATAGTTATTTTAGATAAAGGGTTTAAGAATATATAAAAAAGGCGAATAAATCGCCTTAAAATTAATATTCTTCTTTGTATTCATAAATTTGAAGAATAAGGTTTTTATTTAAAATATGCTGTTGATGATTAGCATATTGAGAATAATCAGTAATGATTTCAATAAAATTATCAAATTCATCAATTATTTTTCCATCAAAACTAATTTTGTCAGTTGTATTTAAGATTATATGAACTTTTTTATCTTTAAATTTTTTTAATAAAGTCATATTAATTCCTCCTTTGATGATGTATTGCTGTAAAGATATTATAACTTTTTGAAAGATTAAATACAAGAAATTTAAAAAACAGAATATAATTTTCCATAATAAATATTCTTTTATAATAAA # Right flank : GGTCATAAATTCAGACTTTAATAATTCCTTATTCTTTTCTAACATTCTAATTATAGCATATTTGATAGATTTTTTCCAACCAAGTATGTATAAAAAGCTATATGTATGAAGCATCGCCTATTAAAGGATATTATTGATAAAATACAATTTTTAACTTGGAAAATAAAATGATATATTACTAGAATATATAATTAATTTATTTTTTATATGTCAGAATAGTTGTGCTGTAATTACCAAACTATGACAGGGAAATTTTAAAAAGTTTTAAAAAATTTGTTTGTTTTTTTAAGAAAAATATAGTATTTTAAAAATACAGGATATTTGAAAAAGATGGATTTAGAATAATTTATAATTGTAGGTTGTAAAAACTTTCGCTAAAGAGTATATTATATAGTAGAATGTAATAGAACAAAGAGATGTTGAGGAGGAAAATTAATTGAAACCAATAATAGGAATAACTACTTTTAGAGAGATGAGAGAAAAAGGGGAATATAACTCTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAAAACTTATCAGTTGATATTCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [76.7-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //