Array 1 533688-534204 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPAC01000001.1 Klebsiella pneumoniae strain JHTS001 tig00000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 533688 28 96.4 33 .............A.............. CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 533749 28 100.0 33 ............................ TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 533810 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 533871 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 533932 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 533993 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 534054 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [534059] 534116 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 534177 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.6 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 542958-546157 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPAC01000001.1 Klebsiella pneumoniae strain JHTS001 tig00000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 542958 28 100.0 33 ............................ TGTCATCCAGTTCGCTGATTGTTGCTTCCATGA 543019 28 100.0 33 ............................ CAATTCATAAACAGGCCTTTTCTCTGTCGTAAG 543080 28 100.0 33 ............................ TGATGAATGATGACGGGCTGCTTGAGTGCGCCC 543141 28 100.0 33 ............................ TAAGGATATGCAGTCAGGAGGAGGGATTAGCGT 543202 28 100.0 33 ............................ TCCTTACGGATTTGCAGGCCCATAGCAGCCCAG 543263 28 100.0 33 ............................ CATTGTTCACATGGACGGGTAACTGGTTATTTA 543324 28 100.0 33 ............................ TCTTGTGCTTGCTGGTACCCCTGCGAGTTGCAA 543385 28 100.0 33 ............................ CCTGCAGGCTGGGCTTTGTGGGTACAAGTGACG 543446 28 100.0 33 ............................ TAAATAGCAAGTTTGTTTGCGGTCTTCACTGCT 543507 28 100.0 33 ............................ TGTTATCGCATGGTACGCCAATGCTGGTGGGCG 543568 28 100.0 33 ............................ CGATAAAGAACCCCCTCAGCGTCTTTGGTCAAC 543629 28 100.0 33 ............................ TTATGAGCAAATGCCCTAAGTGCAATGGCACAA 543690 28 100.0 33 ............................ TTGCATCCTGCCTACATGTGTCTTCAGGGTAAT 543751 28 100.0 33 ............................ TAGAACAAAGCGAGGGGTGCCTGGGGATGAAGT 543812 28 100.0 33 ............................ TGACACGCTTTCATCGTCAGCAATGAATGCCAC 543873 28 100.0 33 ............................ TGATAGCTGATTGCCAGTCAGGCGATTGATGGC 543934 28 100.0 33 ............................ TAGATGCATTTTGCTCAAGTCTACTGTGATTAA 543995 28 100.0 33 ............................ CCAGCCAGCCATTGCAGATTCATAATCTGCACG 544056 28 100.0 33 ............................ TACAAATCATTTCGTGGTGATGACGCCGCCACT 544117 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 544178 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 544239 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 544300 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 544361 28 100.0 33 ............................ TACCCCGTACCCGACCCGCTCTAAAGTGACCGG 544422 28 100.0 33 ............................ CAGGTTCGTACCGGGGCCGTAGAGGTCTGTTTC 544483 28 100.0 33 ............................ TTTTGCACAAGTATAAAAAGTGTAATAAAAATC 544544 28 100.0 33 ............................ CACCACGATCTCTATCACCGACGCGCCGACTAC 544605 28 100.0 33 ............................ TAGCGGTGGTGGCCATCGATAACCTTCACGCCC 544666 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 544727 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 544788 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 544849 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 544910 28 100.0 33 ............................ TTCTTCATTAAGCCAGGCAGAGCCGCCATGAAT 544971 28 100.0 33 ............................ CCATTTCGATCTGGTCGTAGACGTCTTCGCGGT 545032 28 100.0 33 ............................ TTCGATGGGGTCCGACTATATCCGGATAGTAAA 545093 28 100.0 33 ............................ TCAGGGTGTCGAATTTCTTCTTTTTCCTGGTAT 545154 28 100.0 33 ............................ CTCAGATATCGAAATAGCCTGGCGTCAGGCAAT 545215 28 100.0 33 ............................ CAGATCAAAGCCTGGACTGAGCGTCTTAGTGCG 545276 28 100.0 33 ............................ TCGCGAAATTCCCCGCTGCGACCTCTTATAAAT 545337 28 100.0 33 ............................ CCAAGCTGGTGCACGCGGGCAATTCTGGCGGCA 545398 28 100.0 33 ............................ TCAGCGGATCTGGCATACGTGCAAAAAATATCG 545459 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 545520 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 545581 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 545642 28 100.0 33 ............................ TTGAACCTCCCGCATCTGGTCAGGCAGGTTATC 545703 28 100.0 33 ............................ TTGAACCTCCCGCATCTGGTCAGGCAGGTTATC 545764 28 100.0 33 ............................ CAACCGGCACCGTGGCTGCAGGTGACGATTCCA 545825 28 100.0 33 ............................ CACATCGATGAGGACTTTTTTAAGTCTAATCTG 545886 28 100.0 33 ............................ TAATGGATCATCTATCACCCTGGCAAATATTTT 545947 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 546008 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 546069 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 546130 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 53 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //