Array 1 3125563-3125115 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR881458.1 Halomonas sp. 156 isolate Halomonas sp. 156, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3125562 28 96.4 32 ........T................... CGGTGCAGATTCAAGCCGAAAGCCGAGCAGGC 3125502 28 96.4 32 ........T................... CGCTCGATGGCGGGCTAGGGAGTTAAACGTAT 3125442 28 96.4 32 ........T................... AAATGCTACCCGTGCGCAGCATGACCACCTGG 3125382 28 100.0 32 ............................ CGCGGCGAATTGTGGGACACGTTTATCGATGC 3125322 28 100.0 32 ............................ ATGGTACGCAGTGAGTCTTTTACCCATAGCGG 3125262 28 100.0 32 ............................ CGCGAGAGGAGGTGAATAAATCGATCCGGTTG 3125202 28 100.0 32 ............................ TTGGAGACGATTGTTAAACAGCAGCCAGTTTC 3125142 28 92.9 0 ........................T.T. | ========== ====== ====== ====== ============================ ================================ ================== 8 28 97.8 32 GTGAACCGCCGCATAGGCAGCTGAAAAT # Left flank : ATATAGCTGACGAAGGATTTATTGAAGTTAGTGGTGTTAAAATGGTTCCATCCACATTAGAGGAAGTGAGGTTTATTAGAAACCAGCATATTGCTAAGTCTTTTCCGGGCGAAATTAAGAGAAGATTGGCCCGTGGCAAAAAGCGGGCTGAAAAACGTGGTGAGACGTTCATGCCTATTAGCGTTGTATCAGATCGTTTGGTTGATCACTGCCACGTAATTCCTATTGATAGCCGCTCGTCAGGCCAACGCTTTCCGCTGTATGTCCAGCTTGAGGCACTCAGCGAAGAAAGCAAGCATGATAGCTACAATAGCTACGGCTTGGCTACACAACACTCGCATACTGGCTCTGTTCCAAATCTTAAACATATTACCTAAATATTTATAGAATATATATTGTATTACTTATCAATGTCTTATCTCTTATACGCCAAGAAGGGTATTTTTACCATTTTGTGTTTATCTCGTTGATATCTATATTTTAAGTACTAACTACGTCTA # Right flank : AGGACTGGAAGCCAGCAACGGTAATGATACACACCGCCGCAATGGCAGTAATTGTTCTAAAACCTCCAATTTTACTTGGAGGTTTTTTTATAGTGAGCCTGGGATAGCGCGCAGCGCCCAATGAGGGGGTCATGAGGGTGTCCTCTGTGGGATTGAGGGCGGATGGTAGGGCTGTCGTAAGAACTTTTCCTACAACCATCGCTCGCCATGACATCTCCAGCAATGACACCTTCCGCCACCTAGGATTGATGCCTACTATGACCTTTTTGCAACTTCATGTCTCGCTTTTCCGAGTAAATGAAAAATGTTTTTACCGCCCCCTGTGGCGCCCTTCAGTACTTAATTCAACGCAAGAAATGAGGCATGGATCTTAAATAAATACACAGGAGGTGCGCTCAGTTTCTGCGGCAAAAAAGCAGATAATCTTAATGTATATTTATGACGTGATTTTATTACAGAAGCAAACGTTCGTTTTATTTTATGTCATCTAAAAATGGAAA # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACCGCCGCATAGGCAGCTGAAAAT # Alternate repeat : GTGAACCGTCGCATAGGCAGCTGAAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 5262858-5262169 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR881458.1 Halomonas sp. 156 isolate Halomonas sp. 156, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5262857 28 100.0 32 ............................ GCCAACGCCGCGCAGTCGGAGGTAAAGGGCCA 5262797 28 100.0 32 ............................ GCCCAGAACAACCGTGCCGAACTCGACGTCTT 5262737 28 100.0 32 ............................ TGAATGAACTCACAATGCCTGGAACCTATTTT 5262677 28 100.0 32 ............................ AATAACGAGTTCACCTGGAAAGAAGTCAACGG 5262617 28 100.0 32 ............................ GTAAATCGCTGGGCATGTTCTGCAGCGTGTAC 5262557 28 100.0 32 ............................ AAGTGCCGTAACGGGCACGGTAAGCACAGGCG 5262497 28 100.0 32 ............................ TTATCCGCTGGCTCTTGGGGGAGAAGAAGCGC 5262437 28 100.0 32 ............................ AGCACGAGATCGCGCACTGTTTGGGTATCCGG 5262377 28 100.0 32 ............................ GTGCCAAACGTCGTCAGCCGATAGGCAAACCC 5262317 28 89.3 32 ..T........TG............... TGGCGGCCTGACTGCATTTGCACGCTGCCCGC 5262257 28 89.3 33 ..T........TG............... ATTCTGATGGATGCTTGGCACCCTTGCTTAGGT 5262196 28 89.3 0 ...T........T........C...... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.3 32 GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CACGGCTGGGGCAATTGATGGGCGCTGACTGGCTAACCGGCATGCGTGATCACACCCAAGTCAGCGAGGTGCTTGCCGTGCCCGCCAATTCTCAGCACTTCAACGTGGCGCGCAAGCAGTTCAATACGGGCAGCCCAAGCCGTGCCAAACGCTATGCCAAGCGGCATGACATTTCGGAAGATGAAGCGCAGCAGATTTATGCCAAGCTAGCGGCGCGGCGCATTGAGCTACCCTTCGTGCAAATAAACAGCCGCTCCACCCAGCAGCGCTTTAGCCTGTTTATTGAACACGGCAAGCCTCAGGAAAAACCGGTGGCGGGTTCGTTTAATCACTATGGCTTAAGCCCTGACGCCACAGTGCCGTGGTTTTGACCCTTTTTTCTAACATGAAAATAGGCGACCAATAATCAATCACTTAGCGGTGTCGCTCGAAAAAGGGTGATACCGCTTTTTTTGGCTAAAGCTCTTTAACAATCAGCACATTAATTTTGATATGCTCTA # Right flank : GCTCCAAAAAACTCAAGGTAATGCGGGATATTGAGTTTATTGCTGGCTCAGTATCGTACTTCATCCCTGAATAGCTGAACCTTTTATTAATTAAAATTGATAGCATAGGAGCATTCTTTAAAAGGAATTTCCACTTATGCACTCGTTGAATAAAGCCATTGTTCTCGCCGCCGCGATTACTCTGGCGCCTCCTATACTGGGTCAGCCAGTGAAGGCAGGAACCGAGGCCTATAACAATGGTGATTACGCCACCGCTCTGAAGTATTTGGAGCCGTTGGCTGAACAAGGCGATGCCGACGCGCAGTACACTCTTGGCGTCATGTACGACCTCGGCGAGGGAGTCACCCAGAACGCCTCAACAGCCGCCGAGTGGTACCGAAAAGCCGCCGAACAGGGCGATGCCGACGCGCAGCTAAGTCTTGGCCTCATGTATGAATACGGCGAAGGAGTTCCCCAGAGCACCTCAACGGCCGCTGAGTGGTATCGCTGGGCCGCTGAGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //