Array 1 335-2 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CWOF01000078.1 Vibrio cholerae strain A76, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
       334	    28	 100.0	    33	............................	CCGAATACAACGGGCAAGCCTGCGCTAACGTTC	
       273	    28	 100.0	    33	............................	CGGTTGATAAAACGCTGCGTAAGTTTTTCGAAG	
       212	    28	 100.0	    33	............................	CCACTATTTCAATAATCGGCGTAGCTCCGACTG	
       151	    28	 100.0	    33	............................	CGAGTGGGTTTAGGTTGTAGGTTGCACATACGC	
        90	    28	 100.0	    33	............................	TTCGAAAAGCTATTAGGCGGCATAACCACAGTT	
        29	    28	 100.0	     0	............................	|                                	
==========	======	======	======	============================	=================================	==================
         6	    28	 100.0	    33	GTCTTCCCCACGCAGGTGGGGGTGTTTC	                                 	       

# Left flank :   |
# Right flank :  CC

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTTCCCCACGCAGGTGGGGGTGTTTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,2] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-10.40,-12.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.28   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//


Array 1 27495-27344 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CWOF01000027.1 Vibrio cholerae strain A76, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	============================	==================================	==================
     27494	    27	  96.4	    34	.....................-......	CTACAACATCCATGCAAGCGGCAAAGAATACAAA	
     27433	    28	 100.0	    34	............................	CCTCTTTAATCGAATTCCATAACGGTGACGTTAA	
     27371	    28	  71.4	     0	.................T..A.TACAGA	|                                 	
==========	======	======	======	============================	==================================	==================
         3	    28	  89.3	    34	GTCTTCCCCACGCAGGTGGGGTGTGTTT	                                  	       

# Left flank :   |
# Right flank :  GTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATGGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTAGCTATAAACCTAAACCAGAGGGGATTTGTGACAACAGCTACGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGACTGCGTC

# Questionable array : NO	 Score: 3.63
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTTCCCCACGCAGGTGGGGTGTGTTT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [4,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 95% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [1-1] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,4.5   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//