Array 1 105-3938 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCLU010000019.1 Halomonas sp. TRM85114 contig19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 105 33 100.0 35 ................................. TGCCTCGGCGGTTTGGTGCTCTTGCCACATCTGAG 173 33 100.0 34 ................................. GTTCGCAGCTCGGGCCGATCCTCGAGGAGTTGGA 240 33 100.0 34 ................................. TTTGCCGGTGACATGCGCTCGGCCTTGACCTACC 307 33 100.0 34 ................................. GTTAATCTTGCTGTTGAGGTGTCCCATGAATGAT 374 33 100.0 34 ................................. ATGGCCAGGGCCGCACCCTCTACATAGGCAAGCG 441 33 100.0 35 ................................. ATCTACCCTGATCGGCGTGACTTTAAACCCGAGTC 509 33 100.0 33 ................................. CTCCTCATGTTGTTTCAAACATCATACATGAAG 575 33 100.0 36 ................................. GGTCATCACAGGCTCGCCGGCCTTATCGGTCACCGC 644 33 100.0 35 ................................. AAGGCGTGGTTGGTCGCGATCTACCGCAGCATCAA 712 33 100.0 35 ................................. GCCGGCTGAGTCGAACTGATTACCACCGCTCTCCT 780 33 100.0 37 ................................. TACAACGAGGAGACGGGGCAGCTCACGCGGCGCTGGA 850 33 100.0 35 ................................. GCCATCACCCTCGGAGTCAAATGCAGTCACACCGA 918 33 100.0 36 ................................. GGGATCGAGCAGGGCCGGCTGACCAGTAGCTTGCAG 987 33 100.0 37 ................................. TGACAGCGAGGACGATGTTTACAGCAAGTTCAGCAGT 1057 33 100.0 35 ................................. GAGGACCCCTCTATCTGGCTGAGCCAGGAAAACGC 1125 33 100.0 36 ................................. TTGACCTGGATGGCATCGATACCGACGGTAATCCCG 1194 33 100.0 34 ................................. GCCTCGTCGATGCGGGCGATGGACAGCGCGCCAG 1261 33 100.0 34 ................................. TCGCCCAGCTCGTCTTCCCATGTCTCGCCGAGCG 1328 33 100.0 39 ................................. CTTCGCGATGCGCGTAACCATCCCCCGGTCGGCAGGGTG 1400 33 100.0 37 ................................. GCCGAGATCAGCACCAAGCCATCCACGCTGCGTGAAA 1470 33 100.0 33 ................................. GCCTGCCATGCCTGTCATGACGCGCTCGATGGG 1536 33 100.0 34 ................................. GTACAGGTCTTTACCAATGACGGCATCGGGGCAA 1603 33 100.0 33 ................................. TTCACAGGAACCTCGTAAACGCGATGCCAGGAT 1669 33 100.0 35 ................................. ATGCCGTCACCGGCGCCGCATCCTGAACAGAAATA 1737 33 100.0 35 ................................. GTCTAGTTGTGCAATTAGATCGCCAGAACCGCCGA 1805 33 100.0 36 ................................. AGGACTTACGGAGGCAATTATGCCACAGCAGCTCAG 1874 33 100.0 35 ................................. GCCGATCCGCAGGGCGCCGAATCCCACGAGATCAA 1942 33 100.0 34 ................................. CCTGCTCGCTTTGCGGGATGACGCCGTGTGACGC 2009 33 100.0 34 ................................. TTTGCCTGCTCTTTGCTGTCGTGAAAGCCCAGCC 2076 33 100.0 36 ................................. CTAAACGGTGCCGGCTTCGATGTGACGGCCGTTGCC 2145 33 100.0 34 ................................. CACTACTCTCCGTGTCCTTTGCGCTCCGCCACGG 2212 33 100.0 36 ................................. GGGCCGCAAGCTCAACGGCTACGCTGATAGCGCGCC 2281 33 100.0 34 ................................. TTCCTGATTTAGTTCGCACTGCTACTACATGGGA 2348 33 100.0 35 ................................. TGGTGCGTAGTCTTCGTGACATCTCACGGCGCTGG 2416 33 100.0 35 ................................. TCCCTGGACGCGTTACGAATTGGAGCTGCACAGCC 2484 33 100.0 34 ................................. ACCTGTACGTTGACCTGTCCGATCTGACGAACAG 2551 33 100.0 34 ................................. GTTCTCAAAATAATGAGGTTCTAACTATGGCTGT 2618 33 100.0 34 ................................. ATCGCCCTCGCCGCCGTCGCGGTCTCGATCTCGG 2685 33 100.0 36 ................................. TGGCTCTCCTGTATTTCAGCGGGCAAATGATAACGG 2754 33 100.0 35 ................................. GGCGCGGACCAGCGAGCGCATCTCCTGCTCAAGCT 2822 33 100.0 35 ................................. GCATACGCCCACATGGGCCACCTGCACCACATCGA 2890 33 100.0 36 ................................. GCCGTGGTAGACGCAATACACCAGCGCTCCGTACTG 2959 33 100.0 34 ................................. CTCAGACACCAAAGGCGCCACAGACCCGACCAGC 3026 33 100.0 36 ................................. TTTTACAGCATTGTCTTCTAGCGCATCTTTATACAG 3095 33 100.0 35 ................................. GGGCCGATCAACTCGGGAAGATAGATATCCAGATT 3163 33 100.0 35 ................................. ACGCAGCACGATCTGCGAGCAAAGGTAGGCAGCGA 3231 33 100.0 35 ................................. AACACGCCCGTGCTGTACGGCACGACTGATGCGTT 3299 33 100.0 34 ................................. GCCCGGCAAGCCGAGGTCGAGATCGTCAGCGGCG 3366 33 100.0 35 ................................. GCTCTGCGCTTCTTGTTCTTAAGGTTGCTGTACTG 3434 33 100.0 35 ................................. GACGCCATGGTCGAGAGCGCCTGGAAGCAATCCGA 3502 33 100.0 36 ................................. ATATCGGCATCCTTAATGTTATGCGGATAACTGCAT 3571 33 100.0 33 ................................. GCCGTCGGCCCGCTGATCCGCACCATCGGCGAG 3637 33 100.0 35 ................................. GTGCAACTCGCGGGTTTCGATATTGCGCTGTCCTC 3705 33 100.0 34 ................................. GTCGTGCGGCGGCTAAAATTACACGTTTAGACAT 3772 33 97.0 35 ....................T............ ACGGCCCTCAGATAACCATTGCAGGATATCAAACC 3840 33 100.0 33 ................................. TGTCATACCGGAGAACATCGAACGACGCCCCGC 3906 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ======================================= ================== 57 33 99.9 35 GTCGCGGCCCGCACGGGTCGCGCGGATAGAAAC # Left flank : CCAACAAGGAAAGGTCATGCGGGTCGGGGGGACAATCTGTTGTGATGATTTACGGACTTATAGCGCCGGCGTCGACACGGGCACGTCCACCACCACAACATCGGG # Right flank : CCGTGTCGCCTATGTCGAGACGGCCAAGGGGTCCGGGTCGCGACCCTTGCGGGCTGCAGTTCGCTGCCGCCCAGGCAGCTCAGACATCCGTGTCCGCGGCCAATGACGCTCTTCATTCGCCTTGCTAGAATGAGTAAAAAAGGAATACTTTATACTCATGAGCGATTTCGAATTCGACGACGCCAAGAGCCAGGCCAATCTGGAAAAGCATGGGATTGACTTCCATACGGCTCAGGAACTCTGGAAAGATCCTGATCTTCTGGAGTTCAAGGCTAACTTTGACGATGAACCCCGGTTTCTTGTCATCGGCTGTATTGCTAAAAAACACTGGTCTGCCGTGATCACTTACAGGAACCAGAGAGTTCGCCTGATCTCTGTCAGACGCTCCCGCAAGAAAGAGGTAGAGCTATATGAAAGCTAAGGACTTCGATAAAAAATTTGATGAAGGCAACGAAGACATTGTTGATGACCTTGAGCTTTCGAGCGGCCGTCGCGTCAAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGGCCCGCACGGGTCGCGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 224236-225414 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCLU010000006.1 Halomonas sp. TRM85114 contig6, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 224236 33 100.0 34 ................................. TGCTCGAACAGCTCGCCGCGCTGGCCGGGGCCGG 224303 33 100.0 35 ................................. GTCATCGACGCTTACCACCACGTCGATGCGGTAGT 224371 33 100.0 35 ................................. AGCAGGTACGCCAGTATCCTCGTCACCGGACGGCA 224439 33 100.0 33 ................................. GCCTTGGACGCGCTACGAGCTTGAGCTACATTC 224505 33 100.0 35 ................................. TAGCACGTCCTCGATCCAGTACAACACAAAACCTG 224573 33 100.0 35 ................................. TATATCTTGCTCAAAGTCATCAATCGTGGACTGGT 224641 33 100.0 37 ................................. CAGAGGACGACCCGCGTCAACGCCCTCGCCCACGATG 224711 33 100.0 33 ................................. ATTACCGGGCACTGGACGACATCGGAGGGGACC 224777 33 100.0 34 ................................. ATCAGCCGATGGGCGGCGCCAAAAAGCTCGTCTT 224844 33 100.0 33 ................................. ACTGGAGAGGACTGGCGGGCTTCCGACCCTCCT 224910 33 100.0 36 ................................. AACAGCGTATAAGCCGCCCCTGTGATCGCGTATTCC 224979 33 100.0 33 ................................. GACCGGGCCATGCTCGACAGACGCGGCGGTCTG 225045 33 100.0 35 ................................. GGAGATGATGCGCACCGCCGCCCAGACCGCGCTGA 225113 33 100.0 35 ................................. GATTCGGATAGTGATGGCGAGGCTCAGATTACGGC 225181 33 100.0 34 ................................. GGTTTATCTTGCGGGTGAGTGCGCCCTTCAACTG 225248 33 100.0 35 ................................. GTCGGCAACCTGGCCGGCGTCGATCCAACAGTGTT 225316 33 100.0 33 ................................. CCCTCATCGTGCGGGCGGAAGGCTATTACGCGC 225382 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 18 33 100.0 35 GTCGCGGCCCGCACGGGTCGCGCGGATAGAAAC # Left flank : GTCGATAAGGAGTTAGAGGCAATGATGGTTCTGGTCAGCTACGACGTTAGCACTTCTTCTGATGGTGGTGAGGGGCGGTTGCGTCGTGTCGCGAAGGCCTGTCGTGATGTGGGGCAGCGCGTACAATTCTCGGTTTTCGAGATCGAAGTTGATCCCGATCAATGGGTGCGTGTTCGTCAAAGGCTGATCGACCTGATAGATGATGATGTCGATAGCTTGCGTTTCTATTTTCTCGGTAGGAATTGGAAGAGTCGCATCGAACATATTGGTGCCAAGCCCTCCCTCGATATGAACGGGCCCCTCGTTTTCTGACTTCCCGGCGCGCTTGCGAACCACAAGTGTCCGGTATTTTACGGGCAGGTTCGCGGCTCTTTAACAATATGTTTTTATTGTCTTTTCCTCTGACATTGTGATTAGCAGTACTCCTATGCCTATAAAACGTGTGGGTTCGCTAGGTGATGATGATTTCGCCTAAGCTATCAATGAGTTATAAAGAAGCA # Right flank : ATCGATGGCGGGTGTCAACGCCAATGAAGGCTGTCCGGATTTCATCACTTTAGATTGTCCGTTTTTTATCAGTGCTCTTTCATCGGAAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGGCCCGCACGGGTCGCGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //