Array 1 121655-124826 **** Predicted by CRISPRDetect 2.4 *** >NC_010321.1 Thermoanaerobacter pseudethanolicus ATCC 33223, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 121655 30 100.0 38 .............................. AGCTGAAAGACATTTTAAAGTAGCAGGGCAAGGTACAG 121723 30 100.0 37 .............................. AGTCTATCTTGGCCGACAGGTCTATCCCGATGTAACG 121790 30 100.0 37 .............................. ACAAAAGCGACATGACAATTACTTGCATGAATGGCAA 121857 30 100.0 36 .............................. GCAACATTGGCAAATGAGCTCAAGACGAAATTTAAT 121923 30 100.0 35 .............................. GGCCGTACCTCGGTCCAGGCGATCCGAGGTTGAGG 121988 30 100.0 36 .............................. ATTTATAATCTACAGATAAAACATAAGTTGTGCCTG 122054 30 100.0 37 .............................. TGCATTTCCCCACCTTCGCGGTAAAGCTCCACGAACG 122121 30 100.0 36 .............................. CCAAGAGCGAAGGCAGCGCCAAATGCGCCGGCATTA 122187 30 100.0 36 .............................. CGAGACCCAGAGCGGCAAGTTTGACATGATCAAGAA 122253 30 100.0 37 .............................. CGCCGAATTCAGCTGGAAGCATGGGGAGTGGAAGGAG 122320 30 100.0 38 .............................. ATACTATCACGGCATAAGGCACAAAAGATTGTTTATAT 122388 30 100.0 37 .............................. AAGTATAATCAAAGCGGATGTGCTGACCCAACAGTTT 122455 30 100.0 36 .............................. ACGTATAGCTTCAAACTGGCCGTAATTATAGGCAAA 122521 30 100.0 38 .............................. ATTTTCGACGATATACAGAAACCCACAACAATCCAGAG 122589 30 100.0 36 .............................. ATTTATTGACATGCGGCATATTCGGATTTGGATGGC 122655 30 100.0 37 .............................. TTTGCTGGTGCTCCAGAATGGTGCGTCCGGTTCTTTG 122722 30 100.0 38 .............................. TTGACAATAAAATCGCTTTTTCTGTTCAATATCCTATG 122790 30 100.0 38 .............................. TGCAAAATTTCAGAAAATTTCAGGAAAGGAGGTATGCG 122858 30 100.0 37 .............................. TGGGATGGTCGGATAAAAAAATTGCTGAACAATTAGG 122925 30 100.0 36 .............................. AGATACTTTTTAACTTCTTTATATATTTAATAAAAA 122991 30 100.0 37 .............................. ACCGATTCTTGTTCCTGCTGATTGTAGCAACATCAAC 123058 30 100.0 37 .............................. AAACCCGTAGACCGTCATACCGTGAAATCCTCACCGG 123125 30 100.0 36 .............................. GCCTTTTTGTCTAACACTTGGAATGCTATTAGCACG 123191 30 100.0 37 .............................. ACACAACTGAGGTGACTGTAAGCCGATGGAAGCAAAG 123258 30 100.0 37 .............................. GTTTAGGCACATCGTTTTCGCAGTTGCCGTTGCTAAG 123325 30 100.0 37 .............................. TGAGATTAAGGATTATCTTGTTGCTGACTGGGAGTTA 123392 30 100.0 38 .............................. ACTCTTGATACTTGATTGCTTCTCTTTCTGCATTCCAA 123460 30 100.0 37 .............................. CAGCACTCTTCCACCCCGCCGTTGACTAGTACGTTAA 123527 30 100.0 40 .............................. TAATGATTGATTCTTCTCTGCCGTCTTTATAAAGCACAGG 123597 30 100.0 37 .............................. AACAACATATTATCAAAATTATGAAATTTCACAAACG 123664 30 100.0 35 .............................. ACAAGCTCGCCTATCTTTCCACCAGCTGACTGCAT 123729 30 100.0 38 .............................. AATCCTGGCCCCGGGCAAAGACCACTTCTTCATGCTCC 123797 30 100.0 36 .............................. TGTAAACGAGGGAAAGGATGAAAAAAAAATGATAAA 123863 30 100.0 36 .............................. TGATATTTAAGCGCGCGATGTGGAGGGGTCTCGTGG 123929 30 100.0 36 .............................. CGTGCCTGCAGACTGCAATGCCTACGACGTCATGGA 123995 30 100.0 36 .............................. AGTACTAAAGATTGAGGAGGTATAAACATGGAAGAG 124061 30 100.0 37 .............................. CAGCCTGTTGCTTATAATTAAGGTAACAGCAGGTTAG 124128 30 100.0 37 .............................. AGCTGTTCCTGCAAGGATGCGATGGTTGCAGTTTTTT 124195 30 100.0 38 .............................. CCACCTTTTTTACCTCAATTAGTTCTATAGTATTAAAG 124263 30 100.0 37 .............................. AAACTAGTGATGGATATGTTGATTGGCTAAGTATTGA 124330 30 100.0 36 .............................. TTGCTTTAGCAAGATTGTTATTTTTTAACATATTAC 124396 30 100.0 36 .............................. GAAAAGCAGTTGGAGGAGGCAAAAGAACATGAAAAG 124462 30 100.0 37 .............................. CAGTATTGAAACATTAAAAAATAATGCAGAGCTGAAG 124529 30 100.0 37 .............................. CCTGTAGCACCTTTGTAGTTATCTAAAACCTCAATGG 124596 30 100.0 37 .............................. TAATATCCTGAAACAAAGAAAAAACGCTGAATCTCAG 124663 30 100.0 38 .............................. TAGAGCCTTTTAATATTGCAAAGGAAAAGGTGCTTTCG 124731 30 100.0 36 .............................. ATCGCTTAAATTGTTCTTCTGTTAATTCATTCTCTG 124797 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 48 30 100.0 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : AATATGTGTATTTCCAAATTTGAATTAATTGAAGATGACTATTATAAAGTAGATGCATTTATTGAATTGAATGATGAAGCTAAAGAATTGTGGCATAAGTATGTTGAGCTTAAAGACATAAAAAATCTATTTGAAAGGAGAAATATTTTTAATCGATTTAAAGCTGACTTTTATAAATATGTAATATCAATACCTGCAACAGTGGAAAATATGCCTCCTGATATTTGGGGTTTTAAGTATGTAAATTATGATAGTTTAAATGATTATTATGACAAAGAAACAGGTTTTATAACAAAAGGAGTCACAAGTATATGGTAACAAATTTGTCGTCGATCCCAAATAAGGCAAAAACACCTGGGGATAGACGACATTTTTATTTTTCTGATTTTCATAAAGTAATTGATTTTATTGGACAATATGGTATAATAAAGTCAAGATACTTGACAGAAATTAAAAAATTGTAAGGTGTATAATGTGCTATTTATGCATGTTAGAATGAG # Right flank : CAGTATTAAAAATTAAGGAGGTTTAAAAAATGGAAAAGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAACAAAAAACTAAACCCATACCGATGTAAAAATATGGGATAAATAAATGGTTAATAAAGTTAAATTAAAAGTTAAGACACTGCAGATTCGACCGTGACCTTAAGGCCTAAAGACTCTAGCTTTTTTAAAGATTGACGAATAATCATATTACGCTTTTTCTCTTCATAATAAGTAGGACCTAATTCAATATATGGTTGCTTTTGCTTGAGAATATGATAAACTATAATTAAAATGCTATGTGCCACTGCAACTGCTGCACGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAGAGATAAGTATCTTTTGCCCTTGAGGCAGCTCTGGCAGCTTCAATAAGAGAGCTTCGCAATTTTTGGTTACCTTTTCGAGTTCTTGCAGACTTTTGTTTACCAGCACTTTCATTATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 126525-127959 **** Predicted by CRISPRDetect 2.4 *** >NC_010321.1 Thermoanaerobacter pseudethanolicus ATCC 33223, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 126525 30 100.0 38 .............................. CGCCGAGGTCTTCTCCTGTCGCGATATAATGCGACAGG 126593 30 100.0 36 .............................. GGCAATAGTTTTATTACGTCCAAAACAAACTAAAAG 126659 30 100.0 37 .............................. AAAGGGCGGTTAAACTGCCTGAAAACGGCATAGTGGG 126726 30 100.0 38 .............................. CATGGAAGCAGCAGCCGAGGCCACAGGTGGAGTTTATG 126794 30 100.0 38 .............................. ATGCACCTTGCTTTAGGAGTGCATAAGCCTCTCTCCCG 126862 30 100.0 37 .............................. TAAAGCAAAAAACCAGTGGCTTTGCTGCAAGGGTTGA 126929 30 100.0 36 .............................. AGCTGTTGTTTTGACATATTCATCATCCTTTCTGAA 126995 30 100.0 39 .............................. TGACATTGTCTTCTTTAATTACCTTTCTTATGAAATCCG 127064 30 100.0 35 .............................. GCAGGCAACCCAAAGCGGATGCATTTATGGATTGG 127129 30 100.0 36 .............................. ATTAAGTTGTTGGGCCATGATATCAGGGGCAATAAC 127195 30 100.0 36 .............................. TAAGAACCTGTCATAATCTTTTCATTCTTATTTCTA 127261 30 100.0 36 .............................. AAGGAATTTTGGCTAATAAGCTTGAAAACTTCCATC 127327 30 100.0 37 .............................. CAAAAATTCTGTACTTTATACCGTTGATTTTTTTATG 127394 30 100.0 37 .............................. TACGCAGTACATACAGCAAAGAAGCAGATATTACAGG 127461 30 100.0 38 .............................. TAGCACCGGCATCCAGTAATCATCATGGAAATTATGAG 127529 30 100.0 38 .............................. CCATGACGTGGCGGCATCATTACAATAAGACGATTAAG 127597 30 100.0 38 .............................. TCTACCGTGACGGGTCGGTGGTCCAGCCGACCGAATAG 127665 30 100.0 38 .............................. GTCCATCTTTTTATATTAGCCATCATTATCACCTCAAC 127733 30 100.0 36 .............................. TGGATTACGTGGGCATAGAGAACAAGGTTGACGCCA 127799 30 100.0 35 .............................. CATAGGCCGTGGCTGGGCCGGTATCGGGTATAACG 127864 30 100.0 36 .............................. GGTATATAAACGTCTACGACAATGATGAAGATGTAT 127930 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 22 30 100.0 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : TTCCATAGCAACAACAGAACAACCTTTAGCTTTAATAAATTCTTTTAATGCAATAAGGTCATCGGTCATAGTTGAAAAAGTGCGGATTTCTTTACCTTCTGGTGTTATTATACAAGCTACGACATTCTTTTTATGGACATCTAATCCGCAAACGTGAGAGTAAACTAAATCCATGAAAGAGCCAACTCCTTTTTTAAAATTTGAACGATAGCGACTGTAAAATTGAAGAGCTGGTGCAACAACCATAAGGGGTTATTCTATCCTGCGTGCTTCCCGTAAAGGGAGCAACAATCTGTGGTGCACCTGGTCGTTGGAGTCTGTCTATGAGTCGGGCTCAAAGCACCAAGGTAAGAACGACCTTTCTTCACCAGCCGCTGTACTGATTATATCATCAAAAAAGGACATTTTCATCCTCTGCTGGTGCCGCATTTGCGGCATGGGAGTCTATAAGGAATTGAAACCTAATTTGCTTTAAGCTTGTTGCTACAAGATAGACCTTG # Right flank : CAGAGGAACAATTGGAATGTATGAAATAGGACAAAGAGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAACAAAAAACTAAACCCATACCGATGTAAAAATATGGGATAAATAAATGGTTAATAAAGTTAAATTAAAAGTTAAGACACTGCAGATTCGACCGTGACCTTAAGGCCTAAAGACTCTAGCTTTTTTAAAGATTGACGAATAATCATATTACGCTTTTTCTCTTCATAATAAGTAGGACCTAATTCAATATATGGTTGCTTTTGCTTGAGAATATGATAAACTATAATTAAAATGCTATGTGCCACTGCAACTGCTGCACGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAGAGATAAGTATCTTTTGCCCTTGAGGCAGCTCTGGCAGCTTCAATAAGAGAGCTTCGCAATTTTTGGTTACCTTTTCGAGTTCTTGCAGACTTTTGTTTACCAGCACTTTCATTATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 131313-134492 **** Predicted by CRISPRDetect 2.4 *** >NC_010321.1 Thermoanaerobacter pseudethanolicus ATCC 33223, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 131313 30 100.0 36 .............................. TGCCATCACCTATCATACTATCTCCATCCACTCTTA 131379 30 100.0 37 .............................. CCATCTCAGACCGTGCAGAAAGCAACTTGTCTAATTG 131446 30 100.0 36 .............................. AACTATGACATATAAAATTTAATGTGCCTTGTGGAG 131512 30 100.0 37 .............................. CCAGTACCGTAGCTTCCTACAAATATGATGCCTACTC 131579 30 100.0 38 .............................. TTTCCCTCTATATATTCAACAGGTTCAGGATATTTACG 131647 30 100.0 37 .............................. TTGAAAGTAAATTAGGAGAAAGATTTCGTGCAAGAAG 131714 30 100.0 37 .............................. CGTGTTCCCAAAAAAGTGGACATGGTTCTTGTTCTTC 131781 30 100.0 39 .............................. ATTATTTGCTCAATAGCCGAGCAGAGAACGGATTTGCCT 131850 30 100.0 36 .............................. TTTCCTCTCGGACCGCCCCATCCATTACAGCAGCCG 131916 30 100.0 38 .............................. CATGCTCTCTCTGTAGTTGTGCGGCTGTTCCCGGTGGG 131984 30 100.0 35 .............................. TCTACCAATGCATGGACGATATGCAGGACACCTGG 132049 30 100.0 36 .............................. GCGAACCCATACTGCAAAGCCTCTTCTGCTGTCATC 132115 30 100.0 37 .............................. ATGCTTCCATCTTTTTTCGCCTCCTCAGTATCTTTCC 132182 30 100.0 37 .............................. ACAATAAGGCGATCCCGGCGCTGATTGATTTAAACGG 132249 30 100.0 36 .............................. GTTAATACGGCCGGCATGTTTGTCTTGCGAAGCACG 132315 30 100.0 37 .............................. CCTCGGACGATGCTAAAGCAACTCTTTCACCTTGCAG 132382 30 100.0 40 .............................. CAGAAAAGTGTATCATTGTGTATCATGTTTCTTGAGTTTG 132452 30 100.0 37 .............................. CACATTTCAGCAATTCTCGATACTATTGCATCGCCTG 132519 30 100.0 37 .............................. GAAGAAGAGGAATAGAGAGGGTTTACTCCCTCTCTTC 132586 30 100.0 37 .............................. TTTTGTCCGAGGGACTTGGTCTAAACGTGGACAGCGA 132653 30 100.0 36 .............................. AGATCTTTTTGAGGACAATTACCTTTCCGTCTATAT 132719 30 100.0 38 .............................. TGTGTATTACATTGCCTTGTTTATCAAGTGGTTGTATA 132787 30 100.0 38 .............................. TTACGTGCGCAAAGATGGCAGCATCTTCCGAGGCAGAG 132855 30 100.0 35 .............................. TTTTATTTCCTCCTCCTTAATTTTTTTATTTTCCC 132920 30 100.0 37 .............................. TTTTCTATTGCCCACTCCGAAAGCATTGCTTTTCCCG 132987 30 100.0 38 .............................. TTTTATCGGACTTTGTGATATAATATAAGTATGATATG 133055 30 100.0 37 .............................. TCCAACCATCCGTTGTGTAACGGATTGGATAACCTTC 133122 30 100.0 37 .............................. ATCCTTTGAGGAAAGTTGTTGAGCTATTGACTTATAG 133189 30 100.0 37 .............................. TATAGCTGCTCTTGTTTTAAACGTTCTTCCTAACAGT 133256 30 100.0 36 .............................. CCCCATTTAATGTAGTATCCGTTTTTGTAAATCTTC 133322 30 100.0 38 .............................. AGAAATTTCTCATCTTCTCTGGAACATCCAAAGCTGCG 133390 30 100.0 38 .............................. AAGGCAAATACAGGATTGCTTATGGAAAGATTGAGCAG 133458 30 100.0 39 .............................. TAGAAAGAGCAGAGGGCTAATGCCCTCTCTCTAAAAAAG 133527 30 100.0 37 .............................. TTTTTAAGATTTTCTGTTTTATCTTTTATCTTGTCTA 133594 30 100.0 38 .............................. GCCGCTAATTTGTGCTCTTCAGCTTTGAGCTCATTAAG 133662 30 100.0 37 .............................. TAAAGTCGCGATACTATAGCCTCTGCTGTTTCAACGT 133729 30 100.0 36 .............................. AAAGCCTCTAATGCACCTTTGAATCCCTTCATTTTG 133795 30 100.0 36 .............................. CTGTGATACTGTTGCCGCTTACTGCGGTTATGGTCA 133861 30 100.0 37 .............................. AGTATATAAAGAAGGTTTTGGAAGTTTCTAATTTAGG 133928 30 100.0 36 .............................. TTGGTTGTGATAATTCAGCTAACTTCTTTTTTGCTG 133994 30 100.0 36 .............................. AGCAGCCTGTGAAGCTCTGATATAAATTTGTCTTGT 134060 30 100.0 36 .............................. AGCTAAAACTACCCGATATGCTAAAATGCGGTAATG 134126 30 100.0 35 .............................. AGCTTTGTTGAAAATTCTTGTACCAATGCTGGAAG 134191 30 100.0 38 .............................. CGCAAGATGTGGAAGATTTAGAGGATATCGAAGGAACA 134259 30 100.0 37 .............................. CAGAGCCAGGGAAATTGGATGTAGGCAGGATGCCTGC 134326 30 100.0 37 .............................. CACTTACGCGCATGCGGTAGCTCCTGATCATGTTCCG 134393 30 100.0 40 .............................. ATATCTTTTCAGCTTCAGCAACAGGATCGAAAGCATAAGG 134463 30 70.0 0 ...........C.T.T.TTAA....TG... | ========== ====== ====== ====== ============================== ======================================== ================== 48 30 99.4 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : TACTTTCCATAGCAACAACAGAACAACCTTTAGCTTTAATAAATTCTTTTAATGCAATAAGGTCATCGGTCATAGTTGAAAAAGTGCGGATTTCTTTACCTTCTGGTGTTATTATACAAGCTACGACATTCTTTTTATGGACATCTAATCCGCAAACATGAGAATAAACTAAATCCATGAAAGAACCAACTCCTTTTTTAAAATTTGAACGATAGCGACTGTAAAATTGAAGAGCTGGTGCAACAACCATAAGGGGTTATTCTATCCTGCGTGCTTCCCGTAAAGGGAGCAACAATCTGTGGTGCACCTGGTCGTTGGAGTCTGTCTATGAGTCGGGCTCAAAGCACCAAGGTAAGAACGACCTTTCTTCACCAGCCGCTGTACTGATTATATCATCAAAAAAGGACATTTTCATCCTCTGCTGGTGCCGCATTTGCGGCATGGGAGTCTATAAGGAATTGAAACAGGTCAAACCTGGGGCAAAGACTTACGACGGGAAA # Right flank : CGATAGCGACTGTAAAATTGAAGAGCTGGTGCAACAACCATAAGGGGTTATTCTATCCTGCGTGCTTCCCGTAAAGGGAGCAACAATCTGTGGTGCACCTGGTCGTTGGAGTCTGTCTATGAGTCGGGCTCAAAGCACCAAGGTAAGAACGACCTTTCTTCACCAGCCGCTGTACTGATTATATCATCAAAAAAGGACATTTTCATCCTCTGCTGGTGCCGCATTTGCGGCATGGGAGTCTATAAGGAATTGAAACGTTTTTTGTACATTTCACTATCAAGGATTTTTCTATGTTTTTAGCCTACCTATAAGGAATTGAAACTGCCGTCTGTGCCTTGCGAATATTCTACGTCGCCGAGTTTTTAGCCTACCTATAAGGAATTGAAACTGTTGAAGACATATATCTGAAAGTTGTATCAAAAAAGTTTTTAGCCTACCTATAAGGAATTGAAACAGCTCTTCTACTGCTCTTCTTCCTCTGCGATAAACAGTTTTTAGCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 134784-135544 **** Predicted by CRISPRDetect 2.4 *** >NC_010321.1 Thermoanaerobacter pseudethanolicus ATCC 33223, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 134784 30 100.0 36 .............................. TGCCGTCTGTGCCTTGCGAATATTCTACGTCGCCGA 134850 30 100.0 36 .............................. TGTTGAAGACATATATCTGAAAGTTGTATCAAAAAA 134916 30 100.0 36 .............................. AGCTCTTCTACTGCTCTTCTTCCTCTGCGATAAACA 134982 30 100.0 37 .............................. ACAAAACAACTCGCTGGGATAGAACAATTAGAAGAAA 135049 30 100.0 37 .............................. TAGGCTTCTAGCGTTACACCAATAGGCTCTGTCGGGT 135116 30 100.0 38 .............................. AGGAGTTAATACTGCGACTGCACTTAAAACAGCCATAA 135184 30 100.0 36 .............................. CTTAGCAGCGTTGATACATGCCTAATACCATCAAGG 135250 30 100.0 37 .............................. AGTCCATATCGCCATTTACATAGTAGACTACTTCTTT 135317 30 100.0 35 .............................. GAGCAGAAATGGAATTGCATGGCTATGCAGCAGAA 135382 30 100.0 37 .............................. TTAAAAAGCCTGCCCTTTTGCAGTTAATAGTCTCTTA 135449 30 100.0 36 .............................. TAGGCAATGTTTATGCATCCGAGCTAGGGCTATCCT 135515 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 12 30 100.0 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : GAAACCAGAGCCAGGGAAATTGGATGTAGGCAGGATGCCTGCGTTTTTAGCCTACCTATAAGGAATTGAAACCACTTACGCGCATGCGGTAGCTCCTGATCATGTTCCGGTTTTTAGCCTACCTATAAGGAATTGAAACATATCTTTTCAGCTTCAGCAACAGGATCGAAAGCATAAGGGTTTTTAGCCTCCTTTTTTAAAATTTGAACGATAGCGACTGTAAAATTGAAGAGCTGGTGCAACAACCATAAGGGGTTATTCTATCCTGCGTGCTTCCCGTAAAGGGAGCAACAATCTGTGGTGCACCTGGTCGTTGGAGTCTGTCTATGAGTCGGGCTCAAAGCACCAAGGTAAGAACGACCTTTCTTCACCAGCCGCTGTACTGATTATATCATCAAAAAAGGACATTTTCATCCTCTGCTGGTGCCGCATTTGCGGCATGGGAGTCTATAAGGAATTGAAACGTTTTTTGTACATTTCACTATCAAGGATTTTTCTAT # Right flank : CCCGCCACATACATCCAAACAGGAAGTACCAGCATGGGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAACAAAAAACTAAACCCATACCGATGTAAAAATATGGGATAAATAAATGGTTAATAAAGTTAAATTAAAAGTTAAGACACTGCAGATTCGACCGTGACCTTAAGGCCTAAAGACTCTAGCTTTTTTAAAGATTGACGAATAATCATATTACGCTTTTTCTCTTCATAATAAGTAGGACCTAATTCAATATATGGTTGCTTTTGCTTGAGAATATGATAAACTATAATTAAAATGCTATGTGCCACTGCAACTGCTGCACGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAGAGATAAGTATCTTTTGCCCTTGAGGCAGCTCTGGCAGCTTCAATAAGAGAGCTTCGCAATTTTTGGTTACCTTTTCGAGTTCTTGCAGACTTTTGTTTACCAGCACTTTCATTATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 137241-138069 **** Predicted by CRISPRDetect 2.4 *** >NC_010321.1 Thermoanaerobacter pseudethanolicus ATCC 33223, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 137241 30 100.0 37 .............................. ACTGTCCCTCAATTTCCTTGTTTTCCTCCTTAAGCTT 137308 30 100.0 36 .............................. TAAACCGCCAGAATGCTGAAGCCATATTCCTCGCAC 137374 30 100.0 36 .............................. ATAACTCCGTTTGGTTTTTCGGGGTTTTGCTGAATA 137440 30 100.0 37 .............................. ATTATCTCTTGAAGCGCCTTTGCAGTGTCGAATTTTT 137507 30 100.0 37 .............................. TTTGGAATTCCTTTAGGCGCTCGAACTCACCCATCTG 137574 30 100.0 38 .............................. AAATACTCGCCGGCGCGAACCTTAATCTTCACCGGCCA 137642 30 100.0 37 .............................. CCCATAACCTTGGGAACACAAATTATATGGTGAACAT 137709 30 100.0 37 .............................. AGAAACTCGCAGAACCCGGCCAACCTGCTGGCTATAG 137776 30 100.0 36 .............................. ATAAAAAAGTTCCCCGTTGTTACCTCATGTTGCTGT 137842 30 100.0 37 .............................. CAAGATAAATGGGATAGCCTTGTTGAGGCAGCAAAAA 137909 30 100.0 36 .............................. CCAACGCTCCCGGTGGTCTTGCGCTGTTCTGGAGTA 137975 30 100.0 35 .............................. ATGTCTAACCTATCAAGTACGTCTTTTATTGCTTG 138040 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 100.0 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : CTTTCCATAGCAACAACAGAACAACCTTTAGCTTTAATAAATTCTTTTAATGCAATAAGGTCATCGGTCATAGTTGAAAAAGTGCGGATTTCTTTACCTTCTGGTGTTATTATACAAGCTACGACATTCTTTTTATGGACATCTAATCCGCAAACGTGAGAGTAAACTAAATCCATGAAAGAGCCAACTCCTTTTTTAAAATTTGAACGATAGCGACTGTAAAATTGAAGAGCTGGTGCAACAACCATAAGGGGTTATTCTATCCTGCGTGCTTCCCGTAAAGGGAGCAACAATCTGTGGTGCACCTGGTCGTTGGAGTCTGTCTATGAGTCGGGCTCAAAGCACCAAGGTAAGAACGACCTTTCTTCACCAGCCGCTGTACTGATTATATCATCAAAAAAGGACATTTTCATCCTCTGCTGGTGCCGCATTTGCGGCATGGGAGTCTATAAGGAATTGAAACAGAAGAATATTGACAGTTTAACTGCTCAAAAGATAGC # Right flank : CTGGATAGCAAAGGCAAGTGCAGAACTGGATAAAAAGAGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAACAAAAAACTAAACCCATACCGATGTAAAAATATGGGATAAATAAATGGTTAATAAAGTTAAATTAAAAGTTAAGACACTGCAGATTCGACCGTGACCTTAAGGCCTAAAGACTCTAGCTTTTTTAAAGATTGACGAATAATCATATTACGCTTTTTCTCTTCATAATAAGTAGGACCTAATTCAATATATGGTTGCTTTTGCTTGAGAATATGATAAACTATAATTAAAATGCTATGTGCCACTGCAACTGCTGCACGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAGAGATAAGTATCTTTTGCCCTTGAGGCAGCTCTGGCAGCTTCAATAAGAGAGCTTCGCAATTTTTGGTTACCTTTTCGAGTTCTTGCAGACTTTTGTTTACCAGCACTTTCATTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 139765-141395 **** Predicted by CRISPRDetect 2.4 *** >NC_010321.1 Thermoanaerobacter pseudethanolicus ATCC 33223, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 139765 30 100.0 37 .............................. GATAGCCTTCAGCTATTAACTTTGCCGCTTCCAATTG 139832 30 100.0 36 .............................. GCTGGTGCTTATTATTGGAAAGGATATAAACAAGCA 139898 30 100.0 35 .............................. CGCTGTCGTCTTTGTTAAAGGACCTGTACCCTGCA 139963 30 100.0 38 .............................. AGATATTGTTCAATATTGCATTTATCTCCGCTTCGCTT 140031 30 100.0 37 .............................. TGTAGAAAATGTCAAAAAACATCAAAAAGGAGGTGTG 140098 30 100.0 35 .............................. AGTAAATACGGGAACAGAAGCAGCACCCGTGTGGA 140163 30 100.0 36 .............................. CATTGCCACTACTTGCAGCAGCAGGAGCATCTATAA 140229 30 100.0 37 .............................. CGTAGAAATAGACCCACCATTTCATCCAGACACACAC 140296 30 100.0 35 .............................. CTGATTGAGTACTAGGGAGGGAGAGAGATGTATCC 140361 30 100.0 37 .............................. AGCGCTTGAGGATGCATACATGAATAATACAATTTTA 140428 30 100.0 37 .............................. CGCCCAAAATGGCGCTTAAAACGGCTGCAAATTTGTC 140495 30 100.0 37 .............................. CCAGCCTGTAATGCAGGGTCGCCTACAAATCCGACGT 140562 30 100.0 38 .............................. TTCTTTAGATATACTTAAAAGCAATGTAGAGAAAGGTG 140630 30 100.0 37 .............................. CGAGTGAAAAGATGATACCATGTCGCTTTGAAATGAG 140697 30 100.0 35 .............................. TCCCTAGTAGTTTAGCCATATCAGCTTGTTTTAAA 140762 30 100.0 36 .............................. AGCTCTTTCATTAATTTTGCAGCTTTGTCTGTCGGA 140828 30 100.0 36 .............................. TTGCCAAGCTGTTTTGCTAATTTGCTCATTTTTGCC 140894 30 100.0 37 .............................. TCGATATAATAGCTCTAAACGTTTGGCTTTGCTTTGT 140961 30 100.0 40 .............................. ATATCCTCGCCAGATACACATTGCTCGCTAACATACAGGC 141031 30 100.0 36 .............................. TAACGCAGACGTGGGAGGTTGCCGTGGATTCGGTTG 141097 30 100.0 37 .............................. TCATAATCTATCAAACCGCTTGCTATTGCAAGCATGA 141164 30 100.0 36 .............................. ACATTGTTTGTAGTTTTGGTATGTTCTGTTGTATAC 141230 30 100.0 39 .............................. TATCATTCCAACTACCAACTTTTGTTAAATAATATTCTC 141299 30 100.0 37 .............................. TATGCTGCATACGTCGAATACGGCACAAAAAAGATGG 141366 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 25 30 100.0 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : TACTTTCCATAGCAACAACAGAACAACCTTTAGCTTTAATAAATTCTTTTAATGCAATAAGGTCATCGGTCATAGTTGAAAAAGTGCGGATTTCTTTACCTTCTGGTGTTATTATACAAGCTACGACATTCTTTTTATGGACATCTAATCCGCAAACATGAGAATAAACTAAATCCATGAAAGAACCAACTCCTTTTTTAAAATTTGAACGATAGCGACTGTAAAATTGAAGAGCTGGTGCAACAACCATAAGGGGTTATTCTATCCTGCGTGCTTCCCGTAAAGGGAGCAACAATCTGTGGTGCACCTGGTCGTTGGAGTCTGTCTATGAGTCGGGCTCAAAGCACCAAGGTAAGAACGACCTTTCTTCACCAGCCGCTGTACTGATTATATCATCAAAAAAGGACATTTTCATCCTCTGCTGGTGCCGCATTTGCGGCATGGGAGTCTATAAGGAATTGAAACCCTATCAGCTCCGGTGGCACCCCAAACGCAATAGC # Right flank : CCCATGTTGGTTTTACGCTCAATCTCGGTTACGTAGAAAGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAACAAAAAACTAAACCCATACCGATGTAAAAATATGGGATAAATAAATGGTTAATAAAGTTAAATTAAAAGTTAAGACACTGCAGATTCGACCGTGACCTTAAGGCCTAAAGACTCTAGCTTTTTTAAAGATTGACGAATAATCATATTACGCTTTTTCTCTTCATAATAAGTAGGACCTAATTCAATATATGGTTGCTTTTGCTTGAGAATATGATAAACTATAATTAAAATGCTATGTGCCACTGCAACTGCTGCACGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAGAGATAAGTATCTTTTGCCCTTGAGGCAGCTCTGGCAGCTTCAATAAGAGAGCTTCGCAATTTTTGGTTACCTTTTCGAGTTCTTGCAGACTTTTGTTTACCAGCACTTTCATTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 7 962976-964207 **** Predicted by CRISPRDetect 2.4 *** >NC_010321.1 Thermoanaerobacter pseudethanolicus ATCC 33223, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 962976 30 100.0 36 .............................. GATAAAGATTGGCAAATAACTGTGATGTAAGGTTAC 963042 30 100.0 37 .............................. GCACAAGAAAAACCTGTACAAGCAGGTAACTGGATTG 963109 30 100.0 36 .............................. TTTGACGTTGTTTCTTGCTCCACTTCTTCTTTTTGC 963175 30 100.0 39 .............................. AAGGCTGAACTTGAACAATCTGAAGTGAAGTTGGTACAA 963244 30 100.0 39 .............................. TTATATTGAAATTGACTGGAATTTTAGAGAATTTTACCT 963313 30 100.0 37 .............................. AAATATGCTTGTACAACTTTATTGATGAGTTCTTGAC 963380 30 100.0 36 .............................. AAAAATTGGACAGCACAAGGACTAAAAACGAGAGAA 963446 30 100.0 36 .............................. ATAAACTTTTTTACGTCTTGCAGTTTCATTTTTACC 963512 30 100.0 36 .............................. AGCAATTGTACAGAGCACACTCAAAGAAAAAAAAGA 963578 30 100.0 39 .............................. ATTCCGCTTCTCTTAAAAAACTTTTGTGCGGAAAAATGT 963647 30 100.0 37 .............................. CCGGCATCCGGGCCACCTCCCTGTTACTGTTACTCTC 963714 30 100.0 36 .............................. TGGGACCACTACTATGAGCTGATAGAATACGACAAA 963780 30 100.0 36 .............................. ATGGGAAGCATTCGTATATTTCGTAGGTTTTGCAAT 963846 30 100.0 35 .............................. AGGTGGGAGAAAGACAACAAAAGCAATGCACTTGC 963911 30 100.0 36 .............................. GCATTAAAAATTGCCAAACTGTTGAATGAATATGAG 963977 30 100.0 37 .............................. ACACGCCACCCAAAACACAGTAACCACAATTGCAAAC 964044 30 100.0 38 .............................. TGGTACTTAGGCTAACAAAAATGCCGGCCGTATTAACA 964112 30 100.0 36 .............................. AATTATTGCAGAGGCAATGGCAAAAGGCTTAAGCAA 964178 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 100.0 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : ATAGGTTCAACCTTTAACAAAGTAGTAAATTCTTTAGTAGTAGATGTTTTAACTCCATTGATTGGAGCCATATTCGGTGCTCCAGATTTTTCTGCTATTAAATTAGGTCCAATAGCCATAGGCAATTTTCTTAACGCTGTTGTTAACTTTGTTATTGTTGCTGCAGCCATTTATTTTTTCATAGTAGCTCCTATGAATGCCATTAAGCGACGTAAACCAAAAGAAAAAGAACAAACACCACCTGAACCATCAGAAGAGGTAAAAATTTTAAGAGAAATATTAGAGGTATTAAAGGAAAAGTAAGGTAAGAATATTGATTAATATAAATTTGTCGTCGACATAAGATAATGCAAAAAATGTTGAGGATCGACGACAAATTATTTTTTCAATTTTAGAAAATAGTTGATTTTGTCGAGCGATATGGTATAATAAAGTAGAAATACTTGACAAATAAGATGAAAAAAGAAAAATTTGTTCTTTATTATATTTGATTATAATGG # Right flank : CATGCGGTGATGGCTTATGAGGATACGTATATTGCGTAGGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAACAAAAAACTAAACCCATACCGATGTAAAAATATGGGATAAATAAATGGTTAATAAAGTTAAATTAAAAGTTAAGACACTGCAGATTCGACCGTGACCTTAAGGCCTAAAGACTCTAGCTTTTTTAAAGATTGACGAATAATCATATTACGCTTTTTCTCTTCATAATAAGTAGGACCTAATTCAATATATGGTTGCTTTTGCTTGAGAATATGATAAACTATAATTAAAATGCTATGTGCCACTGCAACTGCTGCACGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAGAGATAAGTATCTTTTGCCCTTGAGGCAGCTCTGGCAGCTTCAATAAGAGAGCTTCGCAATTTTTGGTTACCTTTTCGAGTTCTTGCAGACTTTTGTTTACCAGCACTTTCATTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //