Array 1 30605-32733 **** Predicted by CRISPRDetect 2.4 ***
>NZ_ORZS01000219.1 Xanthomonas fragariae strain PD 5482 isolate PD 5482, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================ ================================= ==================
30605 28 100.0 32 ............................ AGACGGTACAACTGCATACGCTAGAGGTATAG
30665 28 100.0 33 ............................ GTCATCGTGACAACCGAATACCGTGGTGTCTTC
30726 28 100.0 32 ............................ TTACGGTCATGTCCTGGATATGGTGTCCAGGA
30786 28 100.0 32 ............................ TTTCAGATCCCTCGCCTGGGTGGCCTACTCGT
30846 28 100.0 32 ............................ GTCCATGCGGCCGGCAGCCAACAGGCTGCGAA
30906 28 100.0 32 ............................ TATGTCGCTGAGGGGTGATCCATACCTAACCC
30966 28 100.0 32 ............................ CTGGCTGCAACCGCTACTCCGTAATAACTAGG
31026 28 100.0 32 ............................ ACCAGGTCCCGGCCCTTCTGGGAGTTCACTGC
31086 28 100.0 32 ............................ AATGAGCAATAACTTTTGCGCTAGTGTTCATC
31146 28 100.0 32 ............................ ACATTATCTTTTCCGCGAATCAAAAGCTTAAT
31206 28 100.0 32 ............................ TTCCGGGGCAATCCCTTTACGCCTTCTTGGCC
31266 28 100.0 32 ............................ ACCAAACGAACTGGTCCAGGCTAGGATCCGTT
31326 28 100.0 32 ............................ TTCTGGGACCACACAACCTCGCCTGCGTGCAC
31386 28 100.0 32 ............................ GTTCAGGGCAGGCGAAAGGTCTCAGCGCTGCA
31446 28 100.0 32 ............................ GCATCGACCCAATGGCCGCCCTTGCCAGGCTC
31506 28 100.0 32 ............................ TGCAGATGCGCGCGACGAATATCGGACGTGTC
31566 28 100.0 32 ............................ AAACATGCGGGGATCAGCACGGCCATCGGTTC
31626 28 100.0 32 ............................ CGTAGCCGGGAACTCAGCCAACTGTGCTTGCA
31686 28 100.0 32 ............................ GATTTCACTGATTGATCTGGACACTGTGCAGC
31746 28 100.0 32 ............................ TCGAAGTAGGCATAAAGCACGTTGGGCAGCCG
31806 28 100.0 32 ............................ CAGACAAGCCAGACGCCGACCCACTGATAGTC
31866 28 100.0 32 ............................ CGTCGTTTCGCGTCGTCCACCGCAGCCAAGGT
31926 28 100.0 32 ............................ ACCAACGACGGGTGTCGCGCGCACCTGGGTAG
31986 28 100.0 32 ............................ ACCTACGAGCCCCAGCCGTATGCAGAGGTTTC
32046 28 100.0 32 ............................ CATTAGGCTGCACAGTGTCCAGATCAATCAGT
32106 28 100.0 32 ............................ AGCCGCACCCTTGCAGACTGTACTCTCTGCAT
32166 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG
32226 28 100.0 32 ............................ TGCAGCAGGGGGAGGAACTTCCGTATCAAGAC
32286 28 100.0 32 ............................ TGTAGGAGCAGACGGGGACAATACGCAAGCAG
32346 28 100.0 32 ............................ TTTGCGCCACACCGAAACCGAATTCCGCGACA
32406 28 100.0 32 ............................ TAAGCAGCGCGTTAAGAATACATTCGTGACCT
32466 28 100.0 32 ............................ TAGATGCCCTGATTGCAGAAGTCAGGACCTCT
32526 28 100.0 32 ............................ TCTATGGGGAAATCATTTTCGAAAAGTACATC
32586 28 100.0 32 ............................ TCCCAGGGCAGTCGGTGTCGCACCTTGCTTCG
32646 28 100.0 32 ............................ TTAAACCAAAACTCATGCCAGTCGTAGCGACT
32706 28 100.0 0 ............................ |
========== ====== ====== ====== ============================ ================================= ==================
36 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA
# Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT
# Right flank : AATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGT
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.51,0 Confidence: HIGH]
# Array family : I-F [Matched known repeat from this family],
//
Array 1 34-240 **** Predicted by CRISPRDetect 2.4 ***
>NZ_ORZS01000237.1 Xanthomonas fragariae strain PD 5482 isolate PD 5482, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================ ================================ ==================
34 28 96.4 32 ...............C............ TTACCAAGCAGGTGCACCAGAACTGCCCGCGT
94 28 100.0 32 ............................ CATTTGATTTTAATGGACTCAACAAGCCTCTC
154 28 96.4 31 .............C.............. TATCGTCGCGCCACGCATAGCAGACCGGTGC
213 28 82.1 0 A..........TC........G..T... |
========== ====== ====== ====== ============================ ================================ ==================
4 28 93.7 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA
# Left flank : GGAAACCCTGGGCGTATCATGTGTAGTAGTTAGG
# Right flank : ATGCGACCGGCCCGTCCACTCTCGCGCTGTATTTGCCACGACTGTCGCGTCTCATGGACAGGCGACCTGCAGTGCTCCATGCATCGGCATGTGCTGTTGAACAGGTGACGTTAACCGCGCGCGCATTGGAAAGGCATGTTTGCGCAGGCGTAGCAGTGTACGACGCGTGACGTCGTCGACGCCTTCAACAGACGTGCAACGCAGGGGAAAACCGGCGGAAGATGCACTGCGATAAAGCCACGCCGCGCGCATCACCCGCGCGTGCACTCACTTGCGCCAGTAAAACCCCAGGAACATCGCCACCGCCGATTCGGCCATCTGCGTCTGTTGCTCCGGCGACAGCGGCGGCTGGCCCGTGGCGAGCTGCGGCCAGAACGCGAAGCCCTGCACCAACGCCTGCAGCTGCTGCGCGGCGAAGTGCGGCTCCACGCTTGCGAGCCGCCCGTCGGCCAACGCAACGCGTCGCCAGGTGGTGGTTCCTTCCTCCTTGCTGCCCAACG
# Questionable array : NO Score: 3.74
# Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [28.3-36.7]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0 Confidence: HIGH]
# Array family : I-F [Matched known repeat from this family],
//